View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20665_low_16 (Length: 569)
Name: NF20665_low_16
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 8122253 - 8122598
Alignment:
| Q |
1 |
atacaatattacaaggaaaaataaaaatccccacatacaaacgtattaacagcataaaagtacttcctctttcatgttgagtgtaaaaagatactcactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8122253 |
atacaatattacaaggaaaaataaaaatccccacatacaaacgtattaacagcataaaagtacttcctctttcatgttgagtgtaaaaagatactcactc |
8122352 |
T |
|
| Q |
101 |
ataaactaaaataaaattgtaacgagaattgaaaagaatggcttgaaagaataagaatggttcctttggatgacaatttat-gatatttactatgcttat |
199 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
8122353 |
ataaactaaaatgaaattgtaacgagaattgtaaagaatggcttgaaagaataagaatggttggtttagatgacaatttataaatatttactatgcttat |
8122452 |
T |
|
| Q |
200 |
atttcaattatttgtgagagagtacacttaaagagtacacttnnnnnnntaatattgaattcacattgatatgtaagattccaccattgaaaaggaaaga |
299 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8122453 |
atttcaattatttgtgagagagtacactaaaagagtactcttaaaaaaataatattgaattcacattgacatgtaagattccaccattgaaaaggaaaga |
8122552 |
T |
|
| Q |
300 |
tagttgatttataaatcgaggagctttgaaaatatttaaaactata |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8122553 |
tagttgatttataaatcgaggagctttgaaaatatttaaaactata |
8122598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 344 - 554
Target Start/End: Original strand, 8123997 - 8124206
Alignment:
| Q |
344 |
taaaatacaaacattacacattcagaaaatcacaaacacatgtacactttcgccaggaattgtatttcctcatagttcctttgaccnnnnnnnnnngtca |
443 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
8123997 |
taaaacacaaatattacacattcagaaaatcacaaacacatgtacactttcgccaggaattgtatttcctcatagttcctt-gaccttttttttttgtca |
8124095 |
T |
|
| Q |
444 |
ttaatccatatatgcaaggttttaaaagtcaaattcttctttatttagacatcgtccaactcaatcacatgtgaagggtcatgggcatatttacgaagtt |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8124096 |
ttaatccatatatgcaaggttttaaaagtcaaattcttctttatttggacatcgtccaactcaatcacatgtgaagggtcatgggcatatttacgaagtt |
8124195 |
T |
|
| Q |
544 |
gaggcacatta |
554 |
Q |
| |
|
||||||||||| |
|
|
| T |
8124196 |
gaggcacatta |
8124206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 12880120 - 12880084
Alignment:
| Q |
183 |
atatttactatgcttatatttcaattatttgtgagag |
219 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
12880120 |
atatctactatgcttatatttcaattacttgtgagag |
12880084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University