View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_161 (Length: 241)
Name: NF20665_low_161
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_161 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 11034096 - 11034328
Alignment:
| Q |
8 |
ttactattgacaagttttttagaagaaaagacatcatactaacaacagaacaagnnnnnnnnnatagtttttgtactgaaaatttgttttctaaacttta |
107 |
Q |
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| T |
11034096 |
ttactatttacaagttttttagaagaaaagacatcatactaacaacagaacaagtttttttt-atagtttttgtactgaaaatttgttttctaaacttta |
11034194 |
T |
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| Q |
108 |
ttttaagtcttatgtcttgcttacctatgcgactcgataaacgtgcaactatccaagccacattattccagtaagctgcaaggacatacacaaagcatag |
207 |
Q |
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| T |
11034195 |
ttttaagtcttatgtcttgcttacctgtgcgactcgataaacatgcaactatccaagccacattattccagtaagctgcaaggacatacacaaagcatag |
11034294 |
T |
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| Q |
208 |
taacagattaagtgttaattagtagcactcactc |
241 |
Q |
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| T |
11034295 |
taacagattgagtgttaattagtagcactcactc |
11034328 |
T |
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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 241
Target Start/End: Original strand, 11008834 - 11008932
Alignment:
| Q |
143 |
gataaacgtgcaactatccaagccacattattccagtaagctgcaaggacatacacaaagcatagtaacagattaagtgttaattagtagcactcactc |
241 |
Q |
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| T |
11008834 |
gataaacgtgcaactatccaagccgcgttattccagtaatctgcaagagcaaacataaagcatagtgacatattgagtgttatttagtagcactcactc |
11008932 |
T |
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