View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_164 (Length: 241)
Name: NF20665_low_164
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_164 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 16863830 - 16863593
Alignment:
| Q |
1 |
gcttttgatgttgtggctttccatggttgtgttcacctttataaacaatttctgcaatctcaccatctaatgatctttcaactttctttttaactggaca |
100 |
Q |
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| T |
16863830 |
gcttttgatgttgtggctttccatggttgtgttcacctttataaacaatttctgcaatctcaccatctaatgatctttcaactttctttttaactggata |
16863731 |
T |
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| Q |
101 |
attaggatatgtgcacttgtaataacttcgaggatactcgcttctgtccatattttctctagttatatccatcagacgaaggtctatcagcattatttgt |
200 |
Q |
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| T |
16863730 |
attaggatatgtgcacttgtaataacttcgaagatactcgcttctttccatattttctctagttatatccatcatacgaaggtctatcaacattatttgt |
16863631 |
T |
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| Q |
201 |
ggatggtaatgctttttagtcctcctcaatgttctgtg |
238 |
Q |
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| T |
16863630 |
ggatggtaatgctttttggtcctcctcaatgctctgtg |
16863593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 40471328 - 40471579
Alignment:
| Q |
1 |
gcttttgatgttgtggctttccatggttgtgttcacctttataaacaatttctgcaatctcaccatctaatgatctttcaactttctttttaactggaca |
100 |
Q |
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| T |
40471328 |
gcttttgatgttgtggctttccatggttgtgttcacctttataaacaatttctgcaatctcaccatctaatgatctttcaactttctttttaactggaca |
40471427 |
T |
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| Q |
101 |
attaggatatgtgcacttgtaataacttcgaggatactc--------------gcttctgtccatattttctctagttatatccatcagacgaaggtcta |
186 |
Q |
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| T |
40471428 |
attaggatatgtgcacttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatcatacgaaggtcta |
40471527 |
T |
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| Q |
187 |
tcagcattatttgtggatggtaatgctttttagtcctcctcaatgttctgtg |
238 |
Q |
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| T |
40471528 |
tcagcattatttgtggatggtaatgctttttggtcctcctcaatgttctgtg |
40471579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 2056406 - 2056345
Alignment:
| Q |
81 |
actttctttttaactggacaattaggatatgtgcacttgtaataacttcgaggatactcgct |
142 |
Q |
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| T |
2056406 |
actttctttttaactggacaatttgaatgagtacacttgtagtaacttcgagggtactcgct |
2056345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 18876301 - 18876347
Alignment:
| Q |
96 |
ggacaattaggatatgtgcacttgtaataacttcgaggatactcgct |
142 |
Q |
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| T |
18876301 |
ggacagttaggatgcgtgcacttgtaataacttcgaggaaactcgct |
18876347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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