View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_177 (Length: 238)

Name: NF20665_low_177
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_177
NF20665_low_177
[»] chr3 (2 HSPs)
chr3 (1-238)||(52784901-52785138)
chr3 (1-238)||(52791165-52791402)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 52784901 - 52785138
Alignment:
Q  1 cacgataaacaaacattgacaataattttttaatcgtgaaataaaataataatttcattgtctcatgaacacagttcagttggcatagatattgttatat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  52784901 cacgataaacaaacattgacaatatttttttaatcgtgaaataaaataataattttattgtctcatgaacacagttcagttggcatagatattgtgatat 52785000  T
Q  101 ataagtgttcgattcgaatctcaaattcttcgtctgttcaccttaataattgaatttctagcttttaaactacttaaacaaatnnnnnnnntaataccac 200  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||  |||||||||||||||||||||        |||||||||    
T  52785001 ataagtgttcgattcgaatctcaaattcttcgcttattcaccttaataattgaatttctaatttttaaactacttaaacaaataaaaaaaataataccac 52785100  T
Q  201 nnnnnnncccatagattatttccaatagaagtaatttt 238  Q
            ||||||||||||||||||||||||||||||    
T  52785101 ttttttttccatagattatttccaatagaagtaatttt 52785138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 52791165 - 52791402
Alignment:
Q  1 cacgataaacaaacattgacaataattttttaatcgtgaaataaaataataatttcattgtctcatgaacacagttcagttggcatagatattgttatat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  52791165 cacgataaacaaacattgacaatatttttttaatcgtgaaataaaataataattttattgtctcatgaacacagttcagttggcatagatattgtgatat 52791264  T
Q  101 ataagtgttcgattcgaatctcaaattcttcgtctgttcaccttaataattgaatttctagcttttaaactacttaaacaaatnnnnnnnntaataccac 200  Q
    ||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||  |||||||||||||||||||||        |||||||||    
T  52791265 ataagtgttcgattcgaatctcaaattcttcgcttattcaccttaataattgaatttctaatttttaaactacttaaacaaataaaaaaaataataccac 52791364  T
Q  201 nnnnnnncccatagattatttccaatagaagtaatttt 238  Q
            ||||||||||||||||||||||||||||||    
T  52791365 ttttttttccatagattatttccaatagaagtaatttt 52791402  T

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