View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_178 (Length: 237)

Name: NF20665_low_178
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_178
NF20665_low_178
[»] chr2 (24 HSPs)
chr2 (2-222)||(2768029-2768249)
chr2 (2-224)||(6798619-6798841)
chr2 (2-224)||(17697320-17697542)
chr2 (2-225)||(42518238-42518459)
chr2 (1-224)||(34400990-34401213)
chr2 (3-223)||(44708631-44708851)
chr2 (7-224)||(24206344-24206561)
chr2 (3-224)||(6784097-6784318)
chr2 (23-224)||(14387923-14388124)
chr2 (126-224)||(39456272-39456370)
chr2 (130-224)||(16764059-16764153)
chr2 (3-124)||(39663874-39663995)
chr2 (70-116)||(11022125-11022171)
chr2 (70-116)||(28247628-28247674)
chr2 (172-224)||(4047447-4047499)
chr2 (172-224)||(20941805-20941856)
chr2 (172-224)||(26581545-26581597)
chr2 (175-213)||(38149368-38149406)
chr2 (70-116)||(38149489-38149535)
chr2 (172-224)||(161502-161554)
chr2 (70-110)||(10715876-10715916)
chr2 (114-154)||(20941892-20941932)
chr2 (3-58)||(19581899-19581954)
chr2 (172-200)||(11022252-11022280)
[»] chr3 (25 HSPs)
chr3 (2-224)||(30599016-30599238)
chr3 (2-223)||(46198834-46199055)
chr3 (2-224)||(21349808-21350030)
chr3 (3-220)||(2378107-2378324)
chr3 (3-224)||(27897924-27898145)
chr3 (3-224)||(35904558-35904779)
chr3 (3-224)||(53188509-53188730)
chr3 (2-224)||(43766235-43766457)
chr3 (1-221)||(44275025-44275245)
chr3 (81-224)||(17516423-17516565)
chr3 (130-224)||(54899555-54899649)
chr3 (146-224)||(610708-610786)
chr3 (73-224)||(13466273-13466450)
chr3 (3-62)||(42281798-42281857)
chr3 (179-224)||(2661328-2661373)
chr3 (179-224)||(44795313-44795358)
chr3 (10-62)||(48829831-48829883)
chr3 (3-62)||(51685676-51685735)
chr3 (170-224)||(46113581-46113635)
chr3 (172-224)||(23876220-23876272)
chr3 (70-116)||(37886367-37886413)
chr3 (172-221)||(35862440-35862489)
chr3 (175-224)||(41945430-41945479)
chr3 (172-224)||(32843436-32843488)
chr3 (195-224)||(2225165-2225194)
[»] chr8 (23 HSPs)
chr8 (2-224)||(41041393-41041615)
chr8 (2-222)||(40338481-40338701)
chr8 (3-224)||(15307386-15307607)
chr8 (3-224)||(15487755-15487976)
chr8 (3-222)||(29238290-29238509)
chr8 (3-224)||(27404953-27405173)
chr8 (3-163)||(9672110-9672270)
chr8 (126-224)||(5037530-5037628)
chr8 (146-224)||(3152483-3152561)
chr8 (171-221)||(13485114-13485164)
chr8 (3-62)||(41824671-41824730)
chr8 (151-224)||(11720333-11720406)
chr8 (179-224)||(27692260-27692305)
chr8 (179-224)||(33707795-33707840)
chr8 (2-62)||(7744130-7744190)
chr8 (70-116)||(28432810-28432856)
chr8 (70-116)||(40019748-40019794)
chr8 (3-62)||(26239442-26239501)
chr8 (175-224)||(28432939-28432988)
chr8 (172-224)||(25371236-25371288)
chr8 (172-214)||(10770940-10770982)
chr8 (114-147)||(11720278-11720311)
chr8 (175-224)||(12515887-12515936)
[»] chr1 (19 HSPs)
chr1 (3-224)||(50554912-50555133)
chr1 (3-224)||(37087323-37087544)
chr1 (3-224)||(27088380-27088601)
chr1 (3-224)||(26224354-26224575)
chr1 (3-220)||(15105544-15105761)
chr1 (3-221)||(33599952-33600171)
chr1 (126-224)||(25277299-25277397)
chr1 (126-224)||(37345430-37345528)
chr1 (126-224)||(45045435-45045533)
chr1 (142-224)||(6817664-6817746)
chr1 (73-153)||(42558725-42558811)
chr1 (3-62)||(52642636-52642695)
chr1 (3-59)||(6817610-6817666)
chr1 (172-224)||(42558848-42558900)
chr1 (70-116)||(5784320-5784366)
chr1 (70-116)||(11153136-11153182)
chr1 (179-224)||(46582573-46582618)
chr1 (172-209)||(3369967-3370004)
chr1 (172-200)||(5784211-5784239)
[»] chr4 (30 HSPs)
chr4 (3-224)||(35402480-35402698)
chr4 (2-224)||(11254739-11254960)
chr4 (2-224)||(41760408-41760629)
chr4 (3-222)||(51013023-51013242)
chr4 (7-224)||(11641183-11641400)
chr4 (3-222)||(2692095-2692314)
chr4 (104-224)||(41760637-41760757)
chr4 (2-171)||(42981742-42981911)
chr4 (125-224)||(49524226-49524325)
chr4 (3-130)||(833966-834096)
chr4 (3-130)||(5438863-5438993)
chr4 (3-62)||(54387206-54387265)
chr4 (175-224)||(32652952-32653001)
chr4 (2-62)||(48645746-48645806)
chr4 (70-116)||(32653084-32653130)
chr4 (70-116)||(39190272-39190318)
chr4 (70-116)||(39922460-39922506)
chr4 (70-116)||(42879876-42879922)
chr4 (70-116)||(43778979-43779025)
chr4 (179-224)||(43520532-43520577)
chr4 (172-224)||(4614603-4614655)
chr4 (70-116)||(5485505-5485551)
chr4 (70-116)||(39084605-39084651)
chr4 (172-217)||(28101484-28101529)
chr4 (71-116)||(44993401-44993446)
chr4 (172-224)||(7150507-7150559)
chr4 (172-220)||(27385578-27385626)
chr4 (77-154)||(28101365-28101448)
chr4 (175-212)||(13449570-13449607)
chr4 (73-121)||(27385710-27385758)
[»] chr6 (16 HSPs)
chr6 (2-224)||(7371792-7372013)
chr6 (3-224)||(18644375-18644596)
chr6 (3-220)||(9399216-9399433)
chr6 (3-224)||(32437891-32438110)
chr6 (3-197)||(11356316-11356510)
chr6 (2-162)||(20524583-20524743)
chr6 (126-224)||(32517965-32518063)
chr6 (125-224)||(33267809-33267907)
chr6 (179-224)||(20524481-20524526)
chr6 (3-62)||(7050824-7050883)
chr6 (3-62)||(10569465-10569524)
chr6 (70-116)||(34344778-34344824)
chr6 (3-62)||(6902215-6902274)
chr6 (74-116)||(17951156-17951198)
chr6 (74-116)||(35174978-35175020)
chr6 (77-110)||(33267772-33267805)
[»] chr5 (15 HSPs)
chr5 (2-220)||(17575034-17575252)
chr5 (2-220)||(17577065-17577283)
chr5 (2-224)||(28821488-28821710)
chr5 (2-220)||(17575754-17575972)
chr5 (7-224)||(2180865-2181082)
chr5 (3-224)||(42472292-42472513)
chr5 (3-224)||(21842095-21842317)
chr5 (3-224)||(18624124-18624345)
chr5 (2-133)||(34328108-34328239)
chr5 (175-224)||(1344299-1344348)
chr5 (172-224)||(28036377-28036429)
chr5 (179-224)||(2853253-2853298)
chr5 (179-224)||(18341230-18341275)
chr5 (70-116)||(42619875-42619921)
chr5 (175-224)||(1343744-1343793)
[»] chr7 (30 HSPs)
chr7 (2-224)||(38472933-38473154)
chr7 (5-224)||(45360430-45360649)
chr7 (3-224)||(47385016-47385237)
chr7 (3-224)||(22154994-22155215)
chr7 (3-224)||(22210909-22211130)
chr7 (2-224)||(24227229-24227451)
chr7 (22-224)||(35692178-35692381)
chr7 (2-224)||(46438317-46438540)
chr7 (3-224)||(34775772-34775992)
chr7 (3-162)||(48851280-48851439)
chr7 (3-224)||(48311042-48311264)
chr7 (119-224)||(69218-69323)
chr7 (3-123)||(77252-77372)
chr7 (142-224)||(6604619-6604701)
chr7 (174-224)||(23905232-23905282)
chr7 (171-224)||(32840557-32840610)
chr7 (3-62)||(38550254-38550313)
chr7 (172-224)||(11683691-11683743)
chr7 (175-222)||(4321800-4321847)
chr7 (126-173)||(23905122-23905169)
chr7 (70-116)||(30109185-30109231)
chr7 (179-224)||(29995501-29995546)
chr7 (3-59)||(6604699-6604755)
chr7 (70-116)||(48302744-48302790)
chr7 (175-224)||(34691889-34691938)
chr7 (70-114)||(34692023-34692067)
chr7 (172-224)||(40360976-40361028)
chr7 (70-116)||(45464636-45464683)
chr7 (179-224)||(27665031-27665076)
chr7 (187-219)||(7402989-7403021)
[»] scaffold0004 (1 HSPs)
scaffold0004 (3-224)||(107396-107616)
[»] scaffold0345 (1 HSPs)
scaffold0345 (3-197)||(677-871)
[»] scaffold0920 (1 HSPs)
scaffold0920 (75-224)||(1401-1548)
[»] scaffold0564 (1 HSPs)
scaffold0564 (127-224)||(9363-9460)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 2768249 - 2768029
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  2768249 atttgtttaaatagtactggttttgtcttttgattatataggatgatggtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaactaggcta 2768150  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2768149 ttttaaaaacaatggtgctggtcatggaagaaatgcaaggttgatggagaagccaaaggatagggggagagaagaggtttggagggcaaggttgatggat 2768050  T
Q  202 aaagttgattgtgtaggaagt 222  Q
    |||||||||||||||||||||    
T  2768049 aaagttgattgtgtaggaagt 2768029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 6798841 - 6798619
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||       |||| ||||||||||||||| |||||||||||    
T  6798841 atttgtttaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatattttgtgtaggttgatgaagctgacgaactaggcta 6798742  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||  ||||||||||||||||||||||||||||||||||||||| ||    
T  6798741 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgacggagaagccaagagatagggggagagaagaggtttggagggcaaggttgatgaat 6798642  T
Q  202 aaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||    
T  6798641 aaagttgattgtgtaggaagtga 6798619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 17697542 - 17697320
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||||||||| ||||||||||||||| ||||| ||  | ||||||||||||        |||| |||||||||||||||||||||||| ||    
T  17697542 atttgtttaaatagtactgattttgtcttttgattgtataatatatttgtgaaaattgtagattttttgtgtaggttgatgaagctgaagaactaggtta 17697443  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  17697442 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagccaaatgatagggggagagaagaggtttggagggcaaggttgatggat 17697343  T
Q  202 aaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||    
T  17697342 aaagttgattgtgtaggaagtga 17697320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 42518238 - 42518459
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||||||||| ||  ||||||||||| |||| ||||||||||||||||||||       |||||||||||||||||| |||||||||||||    
T  42518238 atttgtttaaatagtactgatt--gtcttttgattgtataggatgatggtgaaaattgtaaattttttgtgtgggttgatgaagctaaagaactaggcta 42518335  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  42518336 ttttaaaaacaatggtgctgatcatggaagaaatgcaaggttgatggagaagccaaaggatagggggagagaagaagtttggagggcaaggttgatggat 42518435  T
Q  202 aaagttgattgtgtaggaagtgat 225  Q
    ||||||||||||||| ||||||||    
T  42518436 aaagttgattgtgtaagaagtgat 42518459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 34400990 - 34401213
Alignment:
Q  1 aatttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggct 100  Q
    ||||||||||||||||||   ||||||||||||||| |||| ||||||||||||| ||||||       |||||||||||||||||||||||||||||||    
T  34400990 aatttgtttaaatagtacatattttgtcttttgattgtataggatgatggtgaaagttgtaaattttttgtgtgggttgatgaagctgaagaactaggct 34401089  T
Q  101 attttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatgga 200  Q
    |||||||||| ||||||| ||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  34401090 attttaaaaataatggtgctggtcatggaagaaatagaaggttgatggagaagccaaaggatagggggagagaagaggtttggagggcaaggttgatgga 34401189  T
Q  201 taaagttgattgtgtaggaagtga 224  Q
    |||||||||||| |||||||||||    
T  34401190 taaagttgattgagtaggaagtga 34401213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 44708631 - 44708851
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||||||||  ||||||||||||||| |||| ||||||||||||||||||||       |||||||||||||||||||||||| |||| |||    
T  44708631 tttgtttaaatagtacttattttgtcttttgattgtatatgatgatggtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaattaggttat 44708730  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    |||||||| ||||||| ||||||||||| | |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44708731 tttaaaaataatggtgctggtcatggaacacatgcaaggttgatggagaagccaaaggataggggcagagaagaggtttggagggcaaggttgatggata 44708830  T
Q  203 aagttgattgtgtaggaagtg 223  Q
    ||||| |||||||||||||||    
T  44708831 aagttaattgtgtaggaagtg 44708851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 24206344 - 24206561
Alignment:
Q  7 tttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctatttta 106  Q
    |||||||  ||||| ||||||||||||||| |||| |||||| |||||||||||||       |||||||||||||||||||||||| ||||||||||||    
T  24206344 tttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaatttttttgtgtgggttgatgaagctgaagaattaggctatttta 24206443  T
Q  107 aaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagt 206  Q
    ||||||||| || ||||||||||| ||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  24206444 aaaacaatgatgctggtcatggaaaaaatgcaaggttgatcgagaagccaaatgataggggcagagaagaggtttggagggcaaggttgatggataaagt 24206543  T
Q  207 tgattgtgtaggaagtga 224  Q
    ||||| ||||||||||||    
T  24206544 tgattatgtaggaagtga 24206561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 6784097 - 6784318
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||  ||||| ||||||||||||||| |||| |||||| |||||||||||||       |  ||||||||||||||||||||| ||||||||    
T  6784097 tttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaatttttttggttgggttgatgaagctgaagaattaggctat 6784196  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||||||||| ||||||||||||||||||||||| |||||| |||||| |||| |||||||| | ||||||||||||||||||||||||||||||||    
T  6784197 tttaaaaacaatgatgttggtcatggaagaaatgcaaagttgatcgagaagccaaatgataggggcaaagaagaggtttggagggcaaggttgatggata 6784296  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||| ||||||||||    
T  6784297 aagttgattgtttaggaagtga 6784318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 14387923 - 14388124
Alignment:
Q  23 tttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctattttaaaaacaatggtgttgg 122  Q
    |||||||||||||| || | |||||| |||||||||||||       |||||||||||||||||||| ||| |||||||||||||||||||||||| |||    
T  14387923 tttgtcttttgattgtacaggatgattgtgaaaattgtaaattttttgtgtgggttgatgaagctgaggaattaggctattttaaaaacaatggtgctgg 14388022  T
Q  123 tcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagt 222  Q
    | |||||||||||||||||||||||||||||  ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14388023 taatggaagaaatgcaaggttgatggagaagctaaatgataggggcagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagt 14388122  T
Q  223 ga 224  Q
    ||    
T  14388123 ga 14388124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 39456370 - 39456272
Alignment:
Q  126 tggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39456370 tggaagaaatgcaaggttgatggaaaagccaaaggataggggcagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 39456272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 16764153 - 16764059
Alignment:
Q  130 agaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16764153 agaaatgcaaggttgatggagaagccaaatgataggggcagagaagaggtttagagggcaaggttgatggataaagttgattgtgtaggaagtga 16764059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 39663874 - 39663995
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||        |||||||||||||||||||||||||||| |||    
T  39663874 tttgtttaaatagtactgattttgtcttttgattgtataggatgatagtgaaaattgtaaattttttatgtgggttgatgaagctgaagaactaggttat 39663973  T
Q  103 tttaaaaacaatggtgttggtc 124  Q
    ||| ||||||||||||||||||    
T  39663974 tttgaaaacaatggtgttggtc 39663995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 11022125 - 11022171
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  11022125 gtgtgggttgatgaagctgaagaactaggttactttaaaaacaatgg 11022171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 28247674 - 28247628
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  28247674 gtgtgggttgatgaagctgaagaactaggttactttaaaaacaatgg 28247628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 4047499 - 4047447
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||    
T  4047499 gaagaggtttggagggcaaagttaatggacaaagttgactgtgtaggaagtga 4047447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 20941856 - 20941805
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    ||||||||||||| | ||||||||||||| |||||||||||||||||||||||    
T  20941856 gaagaggtttggatg-caaggttgatggacaaagttgattgtgtaggaagtga 20941805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 26581545 - 26581597
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||| |||||||    
T  26581545 gaagaggtttagaggggaaggttgatggacaaagttgattgtgtatgaagtga 26581597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 38149406 - 38149368
Alignment:
Q  175 gaggtttggagggcaaggttgatggataaagttgattgt 213  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  38149406 gaggtttggagggcaaggttgatggacaaagttgattgt 38149368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 38149535 - 38149489
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    |||||||||||||||| |||||||||||| || ||||||||||||||    
T  38149535 gtgtgggttgatgaagttgaagaactaggttactttaaaaacaatgg 38149489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 161554 - 161502
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||| |||||||||||||||||| |||||||| | ||||| ||||||    
T  161554 gaagaggtttagagggcaaggttgatggacaaagttgactatgtagaaagtga 161502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 10715876 - 10715916
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaa 110  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  10715876 gtgtgggttgatgaagctgaagaactaggttactttaaaaa 10715916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 20941932 - 20941892
Alignment:
Q  114 tggtgttggtcatggaagaaatgcaaggttgatggagaagt 154  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  20941932 tggtgttggtcatggaagaaaggcaagattgatggagaagt 20941892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 19581899 - 19581954
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaatt 58  Q
    |||||| ||||||||||| ||||||||||| ||| | || ||||||||||||||||    
T  19581899 tttgttaaaatagtactgattttgtcttttaattgtgtaggatgatggtgaaaatt 19581954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 11022252 - 11022280
Alignment:
Q  172 gaagaggtttggagggcaaggttgatgga 200  Q
    |||||||||||||||||||||||||||||    
T  11022252 gaagaggtttggagggcaaggttgatgga 11022280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 30599016 - 30599238
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||       |||||||||||||||| ||||||||||| |||    
T  30599016 atttgtttaaatagtacttattttgtcttttgattgtataagatgatggtgaaaattgtaaattttttgtgtgggttgatgaagttgaagaactagacta 30599115  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30599116 ttttaaaaacaatggtgctggtcatggaagaaatgcaagattgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 30599215  T
Q  202 aaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||    
T  30599216 aaagttgattgtgtaggaagtga 30599238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 46199055 - 46198834
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||||||||| ||||||||||| ||| |||| ||||||||||||||||||||       |||||||||||||||||||||||||||| |||    
T  46199055 atttgtttaaatagtactgattttgtcttttaattgtataggatgatggtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaactagccta 46198956  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46198955 ttttaaaaacaatggttctggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 46198856  T
Q  202 aaagttgattgtgtaggaagtg 223  Q
    ||||||||||||||||||||||    
T  46198855 aaagttgattgtgtaggaagtg 46198834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 21350030 - 21349808
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||||||| | ||||||||||||||| |||| ||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  21350030 atttgtttaaatagtacagattttgtcttttgattgtataggatgatggtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaactaggcta 21349931  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||| ||    
T  21349930 ttttaaaaacaatggtgatggtcatggaagaaatgcaaggttgatggagaagccaaaggatagggggagagaagaagttttgagggcaaggttgatgaat 21349831  T
Q  202 aaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||    
T  21349830 aaagttgattgtgtaggaagtga 21349808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 2378324 - 2378107
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||       ||||||||||||||||||||||||||||| |||    
T  2378324 tttgtttaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaaatttttgtgtgggttgatgaagctgaagaactaggttat 2378225  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  2378224 tttaaaaacaatggtgctggtcatggaagaaatgcaaggttgatggataagtcaaaggataggggcagagaagaggtttggagagcaaggttgatggata 2378125  T
Q  203 aagttgattgtgtaggaa 220  Q
    |||||||||| |||||||    
T  2378124 aagttgattgcgtaggaa 2378107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 27897924 - 27898145
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    ||||| |||||||||||| ||||||||||||||| |||| ||||||||||||||||||||       |||||||||||||||| |||||||||||| |||    
T  27897924 tttgtgtaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttttgtgtgggttgatgaagttgaagaactaggttat 27898023  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  27898024 tttaaaaacaatggtgctggtcatggaagaaatgcaaggttgatggagaaggcaaatgataggggcagagaagaggtttggagggcaaggttgatggata 27898123  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||    
T  27898124 aagttgattgtgtaggaagtga 27898145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 35904558 - 35904779
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||  ||||| ||||||||||| ||| |||| |||||| |||||||||||||       |||||||||||||||||||||||| ||||||||    
T  35904558 tttgtttaaattatactgattttgtctttttattgtataggatgattgtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaattaggctat 35904657  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||||||||||||||    
T  35904658 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaaggcaaacgataggggcagagaacaggtttggagggcaaggttgatggata 35904757  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||    
T  35904758 aagttgattgtgtaggaagtga 35904779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 53188509 - 53188730
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||  ||||| ||||||||||||||| |||| |||||| |||||||||||||       |||||||||||||||||||||||| ||||||||    
T  53188509 tttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaattaggctat 53188608  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||| |||||||||||    
T  53188609 tttaaaaacaacggtgttggtcatggaagaaatgcaaggttgatggagaagccaaatgataggggcagagaagaggtttggagggcaaagttgatggata 53188708  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||    
T  53188709 aagttgattgtgtaggaagtga 53188730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 43766457 - 43766235
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    |||||||||| ||||||   ||||||||||| ||| |||| ||||||||||||||||||||       |||||||||||||||| ||||||||||||| |    
T  43766457 atttgtttaagtagtacaaattttgtctttttattgtataggatgatggtgaaaattgtaaattttttgtgtgggttgatgaagttgaagaactaggcaa 43766358  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    ||||||||||||||||| |||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43766357 ttttaaaaacaatggtgctggtcatggatgaaatgcaagattgatggagaagccaaaggatagggggagagaagaggtttggagggcaaggttgatggat 43766258  T
Q  202 aaagttgattgtgtaggaagtga 224  Q
    |||| ||||||||||||||||||    
T  43766257 aaagctgattgtgtaggaagtga 43766235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 44275025 - 44275245
Alignment:
Q  1 aatttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggct 100  Q
    ||||||||||||||||||   ||||||||||||||| |||| ||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  44275025 aatttgtttaaatagtacatattttgtcttttgattgtataggatgatggtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaactaggct 44275124  T
Q  101 attttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatgga 200  Q
    |||||| ||||||||||  ||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  44275125 attttacaaacaatggttctggtcatcgaagaaatggaaggttgatggagaagccaaaggatagggggagagaagacgtttggagggcaaggttgatgga 44275224  T
Q  201 taaagttgattgtgtaggaag 221  Q
    |||| ||||||||| ||||||    
T  44275225 taaatttgattgtgaaggaag 44275245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 17516565 - 17516423
Alignment:
Q  81 tgaagctgaagaactaggctattttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtt 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  17516565 tgaagctgaagaactaggctattttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagccaaaggat-gggggagagaagaggtt 17516467  T
Q  181 tggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17516466 tggagggcaaggttgatggataaagttgattgtgtaggaagtga 17516423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 54899649 - 54899555
Alignment:
Q  130 agaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||| ||||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54899649 agaaatacaaggttgatggagaagccaaatgataagggcagagaagaggtttggagggcaaggttgatgggtaaagttgattgtgtaggaagtga 54899555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 610786 - 610708
Alignment:
Q  146 tggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||| |||| ||||| |  |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  610786 tggagaagccaaaagatagtgttagagaaaaggcttggagggcaaggttgatggataaagttgattgtgtaggaagtga 610708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 13466450 - 13466273
Alignment:
Q  73 tgggttgatgaagctgaagaactaggctattttaaaaacaatgg------tgttggtcatggaagaaatgcaaggttgatggagaag--tca-------- 156  Q
    |||||||||||||||||||| ||||| |||||||||||||||||      || ||||||||||||||||||||||||||||||||||  |||            
T  13466450 tgggttgatgaagctgaagagctaggttattttaaaaacaatggaatttgtggtggtcatggaagaaatgcaaggttgatggagaaggttcagtccatcg 13466351  T
Q  157 --------aaggatagggggagagaa--gaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
            |||||||| || || |||  |||| |||||||| |||||||||||| |||||||||||||||||||||||    
T  13466350 ttaagcctaaggatagtggaagggaaaagaggattggagggaaaggttgatggacaaagttgattgtgtaggaagtga 13466273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 42281857 - 42281798
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaa 62  Q
    |||||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  42281857 tttgttaaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaa 42281798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 2661373 - 2661328
Alignment:
Q  179 tttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  2661373 tttggaggacaaggttgatggataaagttgattgtgtaggaagtga 2661328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 44795358 - 44795313
Alignment:
Q  179 tttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  44795358 tttggaggacaaggttgatggataaagttgattgtgtaggaagtga 44795313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 48829831 - 48829883
Alignment:
Q  10 aaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaa 62  Q
    ||||||||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  48829831 aaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaa 48829883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 51685735 - 51685676
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaa 62  Q
    |||||| ||||||||| | ||||||||||||||| |||| ||||||||||||||||||||    
T  51685735 tttgttaaaatagtaccgattttgtcttttgattgtataggatgatggtgaaaattgtaa 51685676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 46113635 - 46113581
Alignment:
Q  170 gagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||  ||||||||    
T  46113635 gagaagaggcttggagggcaaggctgatggataaagttgattgtgcgggaagtga 46113581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 23876220 - 23876272
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||||||||| |||||||| | |||| |||||||    
T  23876220 gaagaggtttggagggcaaggttgatggacaaagttgactctgtatgaagtga 23876272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 37886367 - 37886413
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||||||||||||||||  || ||||||||||||||    
T  37886367 gtgtgggttgatgaagctgaagaactagattactttaaaaacaatgg 37886413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 35862440 - 35862489
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaag 221  Q
    ||||||||||| | ||||||||||||| | ||||||||||||||||||||    
T  35862440 gaagaggtttgcatggcaaggttgatgaacaaagttgattgtgtaggaag 35862489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 41945479 - 41945430
Alignment:
Q  175 gaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    ||||||| |||| ||||||||||||| |||||||||||| ||||||||||    
T  41945479 gaggtttagaggacaaggttgatggacaaagttgattgtataggaagtga 41945430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 32843436 - 32843488
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||| ||||||||||||||||||| || |||||||| ||||||||| ||||    
T  32843436 gaagagttttggagggcaaggttgatcgacaaagttgactgtgtaggatgtga 32843488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 224
Target Start/End: Original strand, 2225165 - 2225194
Alignment:
Q  195 gatggataaagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||||||||||    
T  2225165 gatggataaagttgattgtgtaggaagtga 2225194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 41041393 - 41041615
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||       ||||||||||||||||||||||||||| | ||    
T  41041393 atttgtttaaatagtactgattttgtcttttgattgtataggatgacggtgaaaattgtaaaatttttgtgtgggttgatgaagctgaagaactatgtta 41041492  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  41041493 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaaggcaaaggatagggggagagaagaggtttgaagggcaaggttgatggat 41041592  T
Q  202 aaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||    
T  41041593 aaagttgattgtgtaggaagtga 41041615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 40338481 - 40338701
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||||       ||||| |||||||||||||||||||||| |||    
T  40338481 atttgtttaaatagtactgattttgtcttttgattgtataggatgatggtaaaaattgtaatttttttgtgtgagttgatgaagctgaagaactagacta 40338580  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||    
T  40338581 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagccagaggatacggggagagaagaggtttggagggcaaggttgatggat 40338680  T
Q  202 aaagttgattgtgtaggaagt 222  Q
    |||||||||||||||||||||    
T  40338681 aaagttgattgtgtaggaagt 40338701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 15307607 - 15307386
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||  ||||| ||||||||||||||| |||| |||||| |||||||||||||       | |||||||||||||||||||||| ||||||||    
T  15307607 tttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaatttttttgcgtgggttgatgaagctgaagaattaggctat 15307508  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||||||||| || ||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  15307507 tttaaaaacaatgatgctggtcatggaagaaatgcaaggttgatcgagaagccaaatgataggggcagagaagaggtttggagggcaaggttgatggata 15307408  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||    
T  15307407 aagttgattgtgtaggaagtga 15307386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 15487976 - 15487755
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||  ||||| ||||||||||||||| |||| |||||| |||||||||||||       | |||||||||||||||||||||| ||||||||    
T  15487976 tttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaatttttttgcgtgggttgatgaagctgaagaattaggctat 15487877  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||||||||| || ||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  15487876 tttaaaaacaatgatgctggtcatggaagaaatgcaaggttgatcgagaagccaaatgataggggcagagaagaggtttggagggcaaggttgatggata 15487777  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||    
T  15487776 aagttgattgtgtaggaagtga 15487755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 29238509 - 29238290
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||  ||||| ||||||||||||||| |||| |||||| |||||||||||||       |||||||||||||||||||||||| ||||||||    
T  29238509 tttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaatttttttgtgtgggttgatgaagctgaagaattaggctat 29238410  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||||| |||||||||||| ||||||    
T  29238409 tttaaaaacaatggtgctggtcatggaagaaatgcaaggttgatcgagaagccaaatgataggggcagagaagaggtttgaagggcaaggttggtggata 29238310  T
Q  203 aagttgattgtgtaggaagt 222  Q
    ||||||||||||||||||||    
T  29238309 aagttgattgtgtaggaagt 29238290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 27404953 - 27405173
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||  ||||| ||||||||||||||| |||| |||||| ||||||| |||||       |||||||||||||||||||||||| ||||||||    
T  27404953 tttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaactgtaatttttttgtgtgggttgatgaagctgaagaa-taggctat 27405051  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||||||||| || |||||||||||||||||||||||||||  ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  27405052 tttaaaaacaatgatgctggtcatggaagaaatgcaaggttgatcaagaagccaaatgataggggcagagaagaggtttggagggcaaggttgatggata 27405151  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||| ||||||||||    
T  27405152 aagttgattgtctaggaagtga 27405173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 9672110 - 9672270
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||       ||||||||||||||||||||||||||| | |||    
T  9672110 tttgtttaaatagtactgattttgtcttttgattgtataagatgatggtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaactaagttat 9672209  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggata 163  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||| || ||||||    
T  9672210 tttaaaaacaatggtgctgatcatggaagaaatgcaaggttgatggagaagccacaggata 9672270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 5037628 - 5037530
Alignment:
Q  126 tggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||| ||| |||| |||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  5037628 tggaagaaatgcaaggttgatggataagccaaatgataggggaagagaagaggtttggaaggcaaggttgatcgataaagttgattgtgtaggaagtga 5037530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 3152483 - 3152561
Alignment:
Q  146 tggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||| |||||||||| |  |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  3152483 tggagaagccaaaggatagtgttagagaagaggcttggagggcaaggttgatggataaagttgattgtataggaagtga 3152561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 13485114 - 13485164
Alignment:
Q  171 agaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaag 221  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13485114 agaaaaggtttggagggcaaggttgatggataaagttgattgtgtaggaag 13485164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 41824671 - 41824730
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaa 62  Q
    |||||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  41824671 tttgttaaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaa 41824730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 11720333 - 11720406
Alignment:
Q  151 aagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    ||||| |||||||| || || ||||||||||| ||| ||||||||||||| |||||||| ||||||||||||||    
T  11720333 aagtctaaggatagtggcagtgaagaggtttgaaggacaaggttgatggacaaagttgactgtgtaggaagtga 11720406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 27692305 - 27692260
Alignment:
Q  179 tttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  27692305 tttggaggacaaggttgatggataaagttgattgtgtaggaagtga 27692260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 33707795 - 33707840
Alignment:
Q  179 tttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  33707795 tttggaggacaaggttgatggataaagttgattgtgtaggaagtga 33707840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 7744130 - 7744190
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaa 62  Q
    ||||||| ||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  7744130 atttgttaaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaa 7744190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 28432810 - 28432856
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  28432810 gtgtgggttgatgaagctgaagaactaggttactttaaaaacaatgg 28432856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 40019748 - 40019794
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  40019748 gtgtgggttgatgaagctgaagaactaggttactttaaaaacaatgg 40019794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 26239442 - 26239501
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaa 62  Q
    |||||| || || ||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  26239442 tttgttaaagtaatactgattttgtcttttgattgtataggatgatggtgaaaattgtaa 26239501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 28432939 - 28432988
Alignment:
Q  175 gaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||||  |||||||||||| || |||||||    
T  28432939 gaggtttggagggcaaggttgatgggcaaagttgattgtataagaagtga 28432988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 25371236 - 25371288
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    ||||| |||||||| ||||| |||||||| |||||||| ||||||||||||||    
T  25371236 gaagatgtttggagagcaagattgatggacaaagttgagtgtgtaggaagtga 25371288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 10770940 - 10770982
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtg 214  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||    
T  10770940 gaagaggtttggaaggcaaggttgatggacaaagttgactgtg 10770982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 11720278 - 11720311
Alignment:
Q  114 tggtgttggtcatggaagaaatgcaaggttgatg 147  Q
    ||||||||||||| ||||||||||||||||||||    
T  11720278 tggtgttggtcatagaagaaatgcaaggttgatg 11720311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 12515887 - 12515936
Alignment:
Q  175 gaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    ||||||||||||| || ||||||||| |||||||||||| | ||||||||    
T  12515887 gaggtttggagggaaatgttgatggacaaagttgattgtatgggaagtga 12515936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 50554912 - 50555133
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||       ||||||||||||||| ||||||||||||| |||    
T  50554912 tttgtttaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttttgtgtgggttgatgaaactgaagaactaggttat 50555011  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50555012 tttaaaaacaatggtgctggtcatggaagaaatgcaagattgatggagaagccaaaggataggggcagagaagaggtttggagggcaaggttgatggata 50555111  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||    
T  50555112 aagttgattgtgtaggaagtga 50555133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 37087544 - 37087323
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||       |||||||||||||||| ||| |||  |||||||    
T  37087544 tttgtttaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatattttgtgtgggttgatgaagttgaggaatgaggctat 37087445  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  37087444 tttaataacaatggtgctggtcatggaagaaatgcaaggttgatggagaagccaaatgatagggggagagaagaggtttggagggcaaggttgatggata 37087345  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||    
T  37087344 aagttgattgtgtaggaagtga 37087323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 27088601 - 27088380
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||  ||||| ||||||||||||||| |||||||| || |||||||||||||       |||||||||||||||||||||||| ||||||||    
T  27088601 tttgtttaaattatactgattttgtcttttgattgtataagataattgtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaattaggctat 27088502  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||||||||||| |||||||||||||||    
T  27088501 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagccaaatgttaggggcagagaagaggtttggaggacaaggttgatggata 27088402  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||    
T  27088401 aagttgattgtgtaggaagtga 27088380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 26224354 - 26224575
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||  ||||| ||||||||||||||| |||| ||| ||  ||||||||||||       |||||||||||||||||||||||| ||||||||    
T  26224354 tttgtttaaattatactgattttgtcttttgattgtataggataattatgaaaattgtaaattttttgtgtgggttgatgaagctgaagaattaggctat 26224453  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| |||||||||||||||||||    
T  26224454 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagacaaaagataggggaagagaagaggtttgaagggcaaggttgatggata 26224553  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||    
T  26224554 aagttgattgtgtaggaagtga 26224575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 15105761 - 15105544
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||||||||| |||| |||||||||| |||| ||||||||||||||||||||        ||||||||||||||||||||||| |||| |||    
T  15105761 tttgtttaaatagtactgattttttcttttgattgtataggatgatggtgaaaattgtaaattttttatgtgggttgatgaagctgaagaattaggttat 15105662  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |  |||||||||||||||| | ||||||||||||||     
T  15105661 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagccaaatgatagtgtcagagaagaggtttggatgacaaggttgatggatg 15105562  T
Q  203 aagttgattgtgtaggaa 220  Q
    ||||||||||||||||||    
T  15105561 aagttgattgtgtaggaa 15105544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 33599952 - 33600171
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnn-gtgtgggttgatgaagctgaagaactaggcta 101  Q
    |||||||||||  ||||| ||||||||||||||| |||| |||||| |||||||||||||        ||||||||||||||| ||||||||||||||||    
T  33599952 tttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaaatttttttgtgtgggttgatgaatctgaagaactaggcta 33600051  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |||||||| || ||||||||||||||||||||||||||||||    
T  33600052 ttttaaaaacaatggtgatggtcatggaagaaatgcaaggttgatagagaaggcaaatgataggggcagggaagaggtttggagggcaaggttgatggat 33600151  T
Q  202 aaagttgattgtgtaggaag 221  Q
    |||||||||||| |||||||    
T  33600152 aaagttgattgtctaggaag 33600171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 25277299 - 25277397
Alignment:
Q  126 tggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25277299 tggaagaaatgcaaggttgatggagaagccaaaggataggggcaaagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 25277397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 37345528 - 37345430
Alignment:
Q  126 tggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37345528 tggaagaaatgcaaggttgatggagaagccaaaggatatgggcaaagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 37345430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 45045435 - 45045533
Alignment:
Q  126 tggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45045435 tggaagaaatgcaaggttgatggagaagccaaaggataggggcaaagaagaggtttggagggcaagcttgatggataaagttgattgtgtaggaagtga 45045533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 6817664 - 6817746
Alignment:
Q  142 ttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6817664 ttgatggagaagccaaaggataggggcagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaagaagtga 6817746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 42558725 - 42558811
Alignment:
Q  73 tgggttgatgaagctgaagaactaggctattttaaaaacaatg------gtgttggtcatggaagaaatgcaaggttgatggagaag 153  Q
    |||||||||||||||||||||||| | || |||||||||||||      ||||||||||||||||||| ||||| ||||||||||||    
T  42558725 tgggttgatgaagctgaagaactatgatactttaaaaacaatgcaattggtgttggtcatggaagaaaggcaagattgatggagaag 42558811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 52642636 - 52642695
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaa 62  Q
    |||||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  52642636 tttgttaaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaa 52642695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 6817610 - 6817666
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattg 59  Q
    |||||||||||||||||  ||||||||||||||| |||| |||||||||||||||||    
T  6817610 tttgtttaaatagtactaattttgtcttttgattgtatatgatgatggtgaaaattg 6817666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 42558848 - 42558900
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||| |||||||||| |||||||| ||||||||||||||    
T  42558848 gaagaggtttggagggcatggttgatggacaaagttgactgtgtaggaagtga 42558900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 5784366 - 5784320
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  5784366 gtgtgggttgatgaagctgaagaactaggttactttaaaaacaatgg 5784320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 11153136 - 11153182
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    |||||||||||||||| |||||||||||| || ||||||||||||||    
T  11153136 gtgtgggttgatgaagttgaagaactaggttactttaaaaacaatgg 11153182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 46582573 - 46582618
Alignment:
Q  179 tttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||| ||||||||||||||||| |||||| ||||||||||||    
T  46582573 tttggaggacaaggttgatggataaacttgattttgtaggaagtga 46582618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 3369967 - 3370004
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttga 209  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  3369967 gaagaggtttggaggacaaggttgatggacaaagttga 3370004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 5784239 - 5784211
Alignment:
Q  172 gaagaggtttggagggcaaggttgatgga 200  Q
    |||||||||||||||||||||||||||||    
T  5784239 gaagaggtttggagggcaaggttgatgga 5784211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 35402480 - 35402698
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||||||||| ||||||||||||||   ||| ||||||||||||||||||||       ||||||||||||||||||||||||||||| |||    
T  35402480 tttgtttaaatagtactgattttgtcttttgat---ataggatgatggtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaactaggttat 35402576  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35402577 tttaaaaacaatggtgctggtcatggaagaaatgcaaggttgatggagaaggcaaaggataggggcagagaagaggtttggagggcaaggttgatggata 35402676  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||    
T  35402677 aagttgattgtgtaggaagtga 35402698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 11254739 - 11254960
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||       |||| |||||||||||| ||||||||| ||||    
T  11254739 atttgtttaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttttgtgt-ggttgatgaagccgaagaactatgcta 11254837  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  11254838 ttttaaaaacaatggtgctggtcatggaagaaatgcaaggttgatggagaagccaaaggatagggggagagaagaggtttggagggcaaggttgttggat 11254937  T
Q  202 aaagttgattgtgtaggaagtga 224  Q
    |||||| ||||||||||||||||    
T  11254938 aaagttaattgtgtaggaagtga 11254960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 41760408 - 41760629
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||       ||||||||||||||||||||||||||  ||||    
T  41760408 atttgtttaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaactgagcta 41760507  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||    
T  41760508 ttttaaaaacaatggtgctggtcatggaagaaatgcaaggttgatggagaagccaaaggata-ggggagagaagaggtttggagggcaaggttgatgcat 41760606  T
Q  202 aaagttgattgtgtaggaagtga 224  Q
    ||||||||||| |||||||||||    
T  41760607 aaagttgattgggtaggaagtga 41760629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 51013242 - 51013023
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||  ||||| ||||||||||||||| |||| |||||| |||||||||||||       ||||||||| |||||||||||||| ||||||||    
T  51013242 tttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaaattttttgtgtgggttaatgaagctgaagaattaggctat 51013143  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  51013142 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagccaaatgataggggcagagaagaggtttggagggcaaggttgatggata 51013043  T
Q  203 aagttgattgtgtaggaagt 222  Q
    ||||||||||||||||||||    
T  51013042 aagttgattgtgtaggaagt 51013023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 11641400 - 11641183
Alignment:
Q  7 tttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctatttta 106  Q
    ||||||| |||||| |||||  ||||  || |||| |||||||||||||||||| |       || |||||||||||||||||| ||||||| |||||||    
T  11641400 tttaaattgtactgattttgaattttctttgtataggatgatggtgaaaattgtcaattttttgtctgggttgatgaagctgaataactaggttatttta 11641301  T
Q  107 aaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagt 206  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||   | | |||||||| |||||||||||||||||||||||||||    
T  11641300 aaaacaatggtgatggtcatggaagaaatgcaaggttgatggagaagtcaaaggatactagcaaagaagaggattggagggcaaggttgatggataaagt 11641201  T
Q  207 tgattgtgtaggaagtga 224  Q
    ||||||||||||||||||    
T  11641200 tgattgtgtaggaagtga 11641183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 2692095 - 2692314
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    ||||||||||| |||||| |||||  ||||  || |||| || || |||||||||||| |       || |||||||||||||||||||||||||| |||    
T  2692095 tttgtttaaattgtactgattttgaattttctttgtataggacgacggtgaaaattgtcaattttttgtctgggttgatgaagctgaagaactaggttat 2692194  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||||||||  ||||||||| || ||||||||||||||||||||||||||||||||||    
T  2692195 tttaaaaacaatgatgcaggtcatggaagaaatgcaaggttgatggagaagctaaaggatagtggcagagaagaggtttggagggcaaggttgatggata 2692294  T
Q  203 aagttgattgtgtaggaagt 222  Q
    ||||||||||||||||||||    
T  2692295 aagttgattgtgtaggaagt 2692314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 41760637 - 41760757
Alignment:
Q  104 ttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataa 203  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41760637 ttaaaaacaatggtgctggtcatggaagaaatgcaaggttgatggagaagccaaaggatagggggagagaagaggtttggagggcaaggttgatggataa 41760736  T
Q  204 agttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||    
T  41760737 agttgattgtgtaggaagtga 41760757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 42981911 - 42981742
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    |||| |||||||||||||| ||||| ||||||||| || | ||||| ||| ||||||||||       |||||| ||||||||| |||||||||||||||    
T  42981911 atttatttaaatagtactgattttgccttttgattgtacaggatgaaggtaaaaattgtaaattttttgtgtggcttgatgaagttgaagaactaggcta 42981812  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggaga 171  Q
    ||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  42981811 ttttaaaaacaatggtgctggtcatggaagaaatccaatgttgatggagaagccaaaggatagggggaga 42981742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 49524325 - 49524226
Alignment:
Q  125 atggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49524325 atggaagaaatgcaaggttgatggagaagccaaaggataggggcagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 49524226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 833966 - 834096
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattat---ataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggc 99  Q
    |||||||||||  ||||| |||||||||||||| ||   ||| |||||| ||||||| |||||       |||||||||||||||||||||||| |||||    
T  833966 tttgtttaaattatactgattttgtcttttgatgattgtataggatgattgtgaaaactgtaatttttttgtgtgggttgatgaagctgaagaattaggc 834065  T
Q  100 tattttaaaaacaatggtgttggtcatggaa 130  Q
    |||||||||||||||| || |||||||||||    
T  834066 tattttaaaaacaatgatgatggtcatggaa 834096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 130
Target Start/End: Complemental strand, 5438993 - 5438863
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattat---ataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggc 99  Q
    |||||||||||  ||||| |||||||||||||| ||   ||| |||||| ||||||| |||||       |||||||||||||||||||||||| |||||    
T  5438993 tttgtttaaattatactgattttgtcttttgatgattgtataggatgattgtgaaaactgtaatttttttgtgtgggttgatgaagctgaagaattaggc 5438894  T
Q  100 tattttaaaaacaatggtgttggtcatggaa 130  Q
    |||||||||||||||| || |||||||||||    
T  5438893 tattttaaaaacaatgatgctggtcatggaa 5438863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 54387265 - 54387206
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaa 62  Q
    |||||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  54387265 tttgttaaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaa 54387206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 32653001 - 32652952
Alignment:
Q  175 gaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  32653001 gaggtttggagggcaaggttgatggaaaaagttgattgtataggaagtga 32652952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 48645746 - 48645806
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaa 62  Q
    ||||||| ||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||    
T  48645746 atttgttaaaatagtactgattttgccttttgattgtataggatgatggtgaaaattgtaa 48645806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 32653130 - 32653084
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  32653130 gtgtgggttgatgaagctgaagaactaggttactttaaaaacaatgg 32653084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 39190318 - 39190272
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  39190318 gtgtgggttgatgaagctgaagaactaggttactttaaaaacaatgg 39190272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 39922506 - 39922460
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  39922506 gtgtgggttgatgaagctgaagaactaggttactttaaaaacaatgg 39922460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 42879876 - 42879922
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  42879876 gtgtgggttgatgaagctgaagaactaggttactttaaaaacaatgg 42879922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 43778979 - 43779025
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  43778979 gtgtgggttgatgaagctgaagaactaggttactttaaaaacaatgg 43779025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 43520577 - 43520532
Alignment:
Q  179 tttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||    
T  43520577 tttggaggacaaggttgatgaataaagttgattgtgtaggaagtga 43520532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 4614655 - 4614603
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||| |||||||||| |||||||| | ||||||||||||    
T  4614655 gaagaggtttggagggcatggttgatggacaaagttgactatgtaggaagtga 4614603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 5485551 - 5485505
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    |||||||||||||||||||| |||||||| || ||||||||||||||    
T  5485551 gtgtgggttgatgaagctgatgaactaggttactttaaaaacaatgg 5485505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 39084651 - 39084605
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||| ||||||||||||| || ||||||||||||||    
T  39084651 gtgtgggttgatgaaactgaagaactaggttactttaaaaacaatgg 39084605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 28101484 - 28101529
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtgtag 217  Q
    |||||||||||||||||||||| |||||| |||||||| |||||||    
T  28101484 gaagaggtttggagggcaaggtcgatggacaaagttgactgtgtag 28101529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 44993401 - 44993446
Alignment:
Q  71 tgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||||||||||| |||| || ||||||||||||||    
T  44993401 tgtgggttgatgaagctgaagaattaggttactttaaaaacaatgg 44993446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 7150559 - 7150507
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||| |||||||||||||||||| |||||||| | |||| |||||||    
T  7150559 gaagaggtttagagggcaaggttgatggacaaagttgactatgtaagaagtga 7150507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 27385626 - 27385578
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaa 220  Q
    ||||||||||||| | ||||||||||||| |||||||||||| ||||||    
T  27385626 gaagaggtttggaagacaaggttgatggacaaagttgattgtataggaa 27385578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 28101365 - 28101448
Alignment:
Q  77 ttgatgaagctgaagaactaggctattttaaaaacaatgg------tgttggtcatggaagaaatgcaaggttgatggagaagt 154  Q
    |||||||||||||||||||| | || |||||||| |||||      |||||||||||||||||| ||||| || ||||||||||    
T  28101365 ttgatgaagctgaagaactatgttactttaaaaataatggaattggtgttggtcatggaagaaaggcaagatttatggagaagt 28101448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 13449570 - 13449607
Alignment:
Q  175 gaggtttggagggcaaggttgatggataaagttgattg 212  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  13449570 gaggtttggagggcaaagttgatggacaaagttgattg 13449607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 27385758 - 27385710
Alignment:
Q  73 tgggttgatgaagctgaagaactaggctattttaaaaacaatggtgttg 121  Q
    |||||| ||||||||||||||||| | || |||||||||||||| ||||    
T  27385758 tgggtttatgaagctgaagaactaagatactttaaaaacaatggagttg 27385710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 7371792 - 7372013
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||       |||||||||||||||| ||| |||||||||||    
T  7371792 atttgtttaaatagtactgattttgtcttttgattgtatagaatgatggtgaaaattgtaatatttt-gtgtgggttgatgaagttgaggaactaggcta 7371890  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  7371891 ttttaaaaacaatggtgctggtcatggaagaaatgcaaggttgatggagaagccaaaggataaggggagagaagaggtttggagggcaaggttgatggat 7371990  T
Q  202 aaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||    
T  7371991 aaagttgattgtgtaggaagtga 7372013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 18644596 - 18644375
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||  ||||| ||||||||||||||| |||||||| || |||||||||||||       ||| |||||||||||||||||||| ||||||||    
T  18644596 tttgtttaaattatactgattttgtcttttgattgtataagataattgtgaaaattgtaatttttttgtgagggttgatgaagctgaagaattaggctat 18644497  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||    
T  18644496 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaatgctaggggcagagaagaggtttggagggcaaggttgatggata 18644397  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    |||||||||| |||||||||||    
T  18644396 aagttgattgagtaggaagtga 18644375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 9399433 - 9399216
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||||||||  ||||||||||||||| |||| || ||||||||||||| |||       ||||||||||||||||||||||||||||| |||    
T  9399433 tttgtttaaatagtactaattttgtcttttgattgtataggacgatggtgaaaattataaatcttttgtgtgggttgatgaagctgaagaactaggttat 9399334  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||||||| |||| ||||||||| ||||| |||||||||||||||||| |||||||||| || |||||||||||||||| ||||| |||||||||||    
T  9399333 tttaaaaacaagggtgctggtcatggtagaaaagcaaggttgatggagaagccaaaggatagtggcagagaagaggtttggaaggcaaagttgatggata 9399234  T
Q  203 aagttgattgtgtaggaa 220  Q
    ||||||||||||||||||    
T  9399233 aagttgattgtgtaggaa 9399216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 32437891 - 32438110
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||  ||||| ||||||||||||||| |||| ||| ||  ||||||||||||       |||||||||||||||||||||||| ||||||||    
T  32437891 tttgtttaaattatactgattttgtcttttgattgtataggataattttgaaaattgtaaattttttgtgtgggttgatgaagctgaagaattaggctat 32437990  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| | ||||| ||||||||||||||||||||||||||    
T  32437991 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaag-caaatgctaggggcaaagaag-ggtttggagggcaaggttgatggata 32438088  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||    
T  32438089 aagttgattgtgtaggaagtga 32438110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 11356510 - 11356316
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||||||||  ||||||||||||||| |||| ||||||||||||||||||||       ||||| ||||||||||||||||||||||| |||    
T  11356510 tttgtttaaatagtacttattttgtcttttgattgtatatgatgatggtgaaaattgtaaattttttgtgtgagttgatgaagctgaagaactaggttat 11356411  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgat 197  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||    
T  11356410 tttaaaaacaatggtgctggtcatagaagaaatgcaaggttgatggagaagccaaatgataggggcagagaagaggtttggagggcaaggttgat 11356316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 20524743 - 20524583
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    |||||||||||||||||   ||||||||| || || |||| ||||||||||||||||||||       ||||||||||||||||||||||||||| ||||    
T  20524743 atttgtttaaatagtacaaattttgtcttctgcttgtataggatgatggtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaactatgcta 20524644  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggat 162  Q
    |||||||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||    
T  20524643 ttttaaaaacaacggtgctcgtcatggaagaaatgcaaggttgatggagaagccaaaggat 20524583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 32518063 - 32517965
Alignment:
Q  126 tggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32518063 tggaagaaatgcaaggttgatggagaagccaaaggatatgggcaaagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 32517965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 33267809 - 33267907
Alignment:
Q  125 atggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||| ||||| |||||||||| || |||| | |||||||| || |||||||||||||||||||||||||||||||||||||    
T  33267809 atggaagaaatgcaaggttgatgaagaaggcaaaggatagtggcagagtataggtttgg-ggtcaaggttgatggataaagttgattgtgtaggaagtga 33267907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 20524526 - 20524481
Alignment:
Q  179 tttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  20524526 tttggagggcaaggttgatggataaagttgattgtgtaggaagtga 20524481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 7050883 - 7050824
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaa 62  Q
    |||||| |||||||| || ||||||||||||||| |||| ||||||||||||||||||||    
T  7050883 tttgttaaaatagtattgattttgtcttttgattgtataggatgatggtgaaaattgtaa 7050824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 10569524 - 10569465
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaa 62  Q
    |||||| ||||||||||| ||||||||||||||| || | ||||||||||||||||||||    
T  10569524 tttgttaaaatagtactgattttgtcttttgattgtacaggatgatggtgaaaattgtaa 10569465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 34344824 - 34344778
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  34344824 gtgtgggttgatgaagctgaagaactaggttactttaaaaacaatgg 34344778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 6902274 - 6902215
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaa 62  Q
    |||||| |||||| |||| ||||||||||||||| |||| ||||||||||||| ||||||    
T  6902274 tttgttaaaatagaactgattttgtcttttgattgtataggatgatggtgaaatttgtaa 6902215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 17951156 - 17951198
Alignment:
Q  74 gggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  17951156 gggttgatgaagctgaagaactaggttactttaaaaacaatgg 17951198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 35174978 - 35175020
Alignment:
Q  74 gggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||||||||||||| || ||| ||||||||||    
T  35174978 gggttgatgaagctgaagaactaggttactttgaaaacaatgg 35175020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 33267772 - 33267805
Alignment:
Q  77 ttgatgaagctgaagaactaggctattttaaaaa 110  Q
    |||||||||||||||||||||| |||||||||||    
T  33267772 ttgatgaagctgaagaactaggttattttaaaaa 33267805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 17575252 - 17575034
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||  ||||| ||||||||||||||| |||| |||||| |||||||||||||       |||||||||||||||||||||||| |||||||    
T  17575252 atttgtttaaattatactgattttgtcttttgattgtatatgatgattgtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaattaggcta 17575153  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||    
T  17575152 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagccaaatgataggggcagagaagaggtttggagggcaaggttgatggat 17575053  T
Q  202 aaagttgattgtgtaggaa 220  Q
    |||||||||||||||||||    
T  17575052 aaagttgattgtgtaggaa 17575034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 17577283 - 17577065
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||  ||||| ||||||||||||||| |||| |||||| |||||||||||||       |||||||||||||||||||||||| |||||||    
T  17577283 atttgtttaaattatactgattttgtcttttgattgtatatgatgattgtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaattaggcta 17577184  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||    
T  17577183 ttttaaaaacaatgatgttggtcatggaagaaatgcaaggttgatggagaagccaaatgataggggcagagaagaggtttggagggcaaggttgatggat 17577084  T
Q  202 aaagttgattgtgtaggaa 220  Q
    |||||||||||||||||||    
T  17577083 aaagttgattgtgtaggaa 17577065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 28821710 - 28821488
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||||||||| |||||||| ||||||  ||| ||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  28821710 atttgtttaaatagtactgattttgtctattgattgcataggatgatggtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaactaggcta 28821611  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||| |||| | ||||||||||||||| |||||||||||||    
T  28821610 ttttaaaaacaatggtgttggtcaaggaagaaatgcaaggttgatggagaaaccaaaggatagagggatataagaggtttggagggaaaggttgatggat 28821511  T
Q  202 aaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||    
T  28821510 aaagttgattgtgtaggaagtga 28821488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 17575972 - 17575754
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||  ||||| ||||||||||||||| |||| |||||| |||||||||||||       |||||||||||||||||||||||| |||||||    
T  17575972 atttgtttaaattatactgattttgtcttttgattgtatatgatgattgtgaaaattgtaaattttt-gtgtgggttgatgaagctgaagaattaggcta 17575874  T
Q  102 tttt-aaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatgga 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||    
T  17575873 tttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagccaaatgataggggcagagaagaggtttggagggcaaggttgatgga 17575774  T
Q  201 taaagttgattgtgtaggaa 220  Q
    ||||||||||||||||||||    
T  17575773 taaagttgattgtgtaggaa 17575754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 2181082 - 2180865
Alignment:
Q  7 tttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctatttta 106  Q
    |||||||||||||| |||||||||||||||  ||||||||||||||||||||||||        ||||||||||||||| |||||||||||| |||||||    
T  2181082 tttaaatagtactgattttgtcttttgattgcataagatgatggtgaaaattgtaaattttttatgtgggttgatgaagttgaagaactaggttatttta 2180983  T
Q  107 aaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagt 206  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||| | |||||||||||||||| |||||||||| ||||||||    
T  2180982 aaaacaatggtgctggtcatgaaagaaatgcaaggttaatggagaagtcaaaggacaggggcaaagaagaggtttggaggacaaggttgatcgataaagt 2180883  T
Q  207 tgattgtgtaggaagtga 224  Q
    ||||||||||||||||||    
T  2180882 tgattgtgtaggaagtga 2180865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 42472292 - 42472513
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||  ||||| ||||||||||||||| |||| |||||| ||||||| |||||       |||||||||||||||||||||||| ||||||||    
T  42472292 tttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaactgtaatatttttgtgtgggttgatgaagctgaagaattaggctat 42472391  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||||||||| || ||||||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  42472392 tttaaaaacaatgatgctggtcatggaagaaatgcaaggttgatcgagaagccaaatgataggggcagagaagaggtttggagggcaaggttgatggata 42472491  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||| ||||||||||    
T  42472492 aagttgattgtctaggaagtga 42472513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 21842317 - 21842095
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnn-gtgtgggttgatgaagctgaagaactaggcta 101  Q
    |||||||||||  ||||| |||| |||||||||| |||| ||| |  |||||||||||||        |||||||||||||||||||||||| |||||||    
T  21842317 tttgtttaaattatactgattttatcttttgattgtataggataactgtgaaaattgtaaatttttttgtgtgggttgatgaagctgaagaattaggcta 21842218  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||| ||||||||||||||    
T  21842217 ttttaaaaacaatggtgctggtcatggaagaaatgcaaggttgatggagaagtcaaatgctaggggcagagaagaggtttggaggacaaggttgatggat 21842118  T
Q  202 aaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||    
T  21842117 aaagttgattgtgtaggaagtga 21842095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 18624124 - 18624345
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||        ||||||||||||||||| |||||||||| |||    
T  18624124 tttgtttaaatagtactgattttgtcttttgattgtataggatgatagtgaaaattgtaaattttttatgtgggttgatgaagctaaagaactaggttat 18624223  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||  |||||||||| |  |||||||||||||||| | ||||||||||||||     
T  18624224 tttaaaaacaatggtgctggtcatggaagaaatgcaaggttgatagagaatccaaaggatagtgtcagagaagaggtttggatgacaaggttgatggatg 18624323  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||    
T  18624324 aagttgattgtgtaggaagtga 18624345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 2 - 133
Target Start/End: Complemental strand, 34328239 - 34328108
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||       |||||||||||||||||||| |||||||||||    
T  34328239 atttgtttaaataatactgattttgtcttttgattgtataggatgatggtgaaaattgtaaatattttgtgtgggttgatgaagctgaggaactaggcta 34328140  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaa 133  Q
    ||||||||||||||||| ||||||||||||||    
T  34328139 ttttaaaaacaatggtgctggtcatggaagaa 34328108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 1344348 - 1344299
Alignment:
Q  175 gaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  1344348 gaggtttggagggcaaggttgatggacaaagttgattgtataggaagtga 1344299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 28036377 - 28036429
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||    
T  28036377 gaagaagtttggagggcaaggttgatggacaaaattgattgtgtaggaagtga 28036429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 2853253 - 2853298
Alignment:
Q  179 tttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||    
T  2853253 tttggaggacaaggttgatggataaagttgattgtgtaagaagtga 2853298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 18341275 - 18341230
Alignment:
Q  179 tttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||    
T  18341275 tttggagggcaatgttgatggacaaagttgattgtgtaggaagtga 18341230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 42619875 - 42619921
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    |||||||||||||||| |||||||||||| || ||||||||||||||    
T  42619875 gtgtgggttgatgaagttgaagaactaggttactttaaaaacaatgg 42619921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 1343744 - 1343793
Alignment:
Q  175 gaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||| ||| ||||||||||||| |||||||||||| ||| ||||||    
T  1343744 gaggtttgaaggacaaggttgatggacaaagttgattgtatagaaagtga 1343793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 38472933 - 38473154
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||| | ||||| ||||||||||||||| |||| ||||||||||||||||||||       ||||||||||||||||||||| |||||||| |    
T  38472933 atttgtttaaacaatactgattttgtcttttgattgtataggatgatggtgaaaattgtaatttttt-gtgtgggttgatgaagctgaataactaggcaa 38473031  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  38473032 ttttaaaaacaatggtgctggtcatggaagaaatgcaaggttgatggagaagccaaaggatagggggagagaagaggtttggagggcaaagttgatggat 38473131  T
Q  202 aaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||    
T  38473132 aaagttgattgtgtaggaagtga 38473154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 45360649 - 45360430
Alignment:
Q  5 tgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctattt 104  Q
    |||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||       |||||||| |||||||||||| ||||||| |||||    
T  45360649 tgtttaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttttgtgtgggtggatgaagctgaaaaactaggttattt 45360550  T
Q  105 taaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaa 204  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||    
T  45360549 taaaaacaatggtgctggtcatggaagaaatgcaaggttgatggagaagtcaaaggataggggcggagaagaggtttggagggcaaggttgatggaaaaa 45360450  T
Q  205 gttgattgtgtaggaagtga 224  Q
    ||||||||| ||||||||||    
T  45360449 gttgattgtataggaagtga 45360430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 47385016 - 47385237
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    ||||||||||| |||||| ||||||||||||||| || | ||| ||||||||||||||||       ||||||||||||||||||||||||||||| |||    
T  47385016 tttgtttaaatggtactgattttgtcttttgattgtacaggataatggtgaaaattgtaaatcttttgtgtgggttgatgaagctgaagaactaggttat 47385115  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| |||||||||||||||||    
T  47385116 tttaaaaacaatggtgctggtcatggaagaaatgcaaggttgatggagaagccaaaggatagtggcagagaagaggtttggaaggcaaggttgatggata 47385215  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||    
T  47385216 aagttgattgtgtaggaagtga 47385237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 22155215 - 22154994
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    ||||||||||||||||||  |||||| ||||||| |||| ||||||||||||||||||||        ||||||||||||||| |||||||||||| |||    
T  22155215 tttgtttaaatagtactgaatttgtcctttgattgtataggatgatggtgaaaattgtaatatttttttgtgggttgatgaagttgaagaactaggttat 22155116  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||    
T  22155115 tttaaaaacaatgatgttggtcatggaagaaatgcaaggttgatggagaagccaaaggataggggcagagaagaggtttggaggacaaggttgatggata 22155016  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    |||||||| |||||||||||||    
T  22155015 aagttgatcgtgtaggaagtga 22154994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 22211130 - 22210909
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    ||||||||||||||||||  |||||| ||||||| |||| ||||||||||||||||||||        ||||||||||||||| |||||||||||| |||    
T  22211130 tttgtttaaatagtactgaatttgtcctttgattgtataggatgatggtgaaaattgtaatatttttttgtgggttgatgaagttgaagaactaggttat 22211031  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||    
T  22211030 tttaaaaacaatgatgttggtcatggaagaaatgcaaggttgatggagaagccaaaggataggggcagagaagaggtttggaggacaaggttgatggata 22210931  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    |||||||| |||||||||||||    
T  22210930 aagttgatcgtgtaggaagtga 22210909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 24227229 - 24227451
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    ||||||||||||| ||||| ||||||||||||||| |||| ||||| |||| ||||||| |       ||||||||||||||||||||||||||||||||    
T  24227229 atttgtttaaatattactgattttgtcttttgattgtataggatgacggtggaaattgtgaattttttgtgtgggttgatgaagctgaagaactaggcta 24227328  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    ||||||||||||||||  | ||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  24227329 ttttaaaaacaatggtactagtcatggaagaaatgcaagtttgatggagaagtcaaacgataaggggagagaagaagtttggagggcaaggttgatggat 24227428  T
Q  202 aaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||||||    
T  24227429 aaagttgattgtgtaggaagtga 24227451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 35692178 - 35692381
Alignment:
Q  22 ttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctatttt-aaaaacaatggtgtt 120  Q
    ||||||||||||||| ||||||||||| |||||||||||||       |||||||||||||||||||||||||||| ||||||| |||||||| ||||||    
T  35692178 ttttgtcttttgattgtataagatgattgtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaactagactatttttaaaaacaacggtgtt 35692277  T
Q  121 ggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaa 220  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35692278 ggtcatggaagaaatgcaaggttgatggagaagtcaaatgatggggacagagaagaggtttggagggcaaggttggtggataaagttgattgtgtaggaa 35692377  T
Q  221 gtga 224  Q
    ||||    
T  35692378 gtga 35692381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 46438317 - 46438540
Alignment:
Q  2 atttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggcta 101  Q
    |||||||||||||||||||  ||||||||||||||  ||  ||||||||||||||||||||       |||||||||||||||| |||||||||||| ||    
T  46438317 atttgtttaaatagtactgaatttgtcttttgattgcattggatgatggtgaaaattgtaatttttttgtgtgggttgatgaagttgaagaactaggtta 46438416  T
Q  102 ttttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggata-gggggagagaagaggtttggagggcaaggttgatgga 200  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||| |||||||||||||    
T  46438417 ttttaaaaacaatggtgctggtcatggaagaaatgcaaggttgatagagaagccaaaggataggggggagagaagaagtttggaggacaaggttgatgga 46438516  T
Q  201 taaagttgattgtgtaggaagtga 224  Q
    ||||||||| ||||||||||||||    
T  46438517 taaagttgactgtgtaggaagtga 46438540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 34775772 - 34775992
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    ||||||||||||||| || |||||||||||| || |||| ||||||||||||||||||||       ||||||||||||||||||||||||||||| |||    
T  34775772 tttgtttaaatagtattgattttgtcttttggttgtataggatgatggtgaaaattgtaaattttt-gtgtgggttgatgaagctgaagaactaggttat 34775870  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    |||||||| ||||||  | ||||||||||||||| |||||||||||||||| |||| |||||||| | |||||||||||||||||||||||||||| |||    
T  34775871 tttaaaaataatggtactagtcatggaagaaatgtaaggttgatggagaagccaaatgataggggcaaagaagaggtttggagggcaaggttgatgaata 34775970  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||    
T  34775971 aagttgattgtgtaggaagtga 34775992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 162
Target Start/End: Original strand, 48851280 - 48851439
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||       ||||||||||||||||||||||||||||  |||    
T  48851280 tttgtttaaatagtactgattttgtcttttgattgtataagatgatggtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaactagattat 48851379  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggat 162  Q
    || ||||||||||||| |||| ||||||||||||||||||||||||||||  ||||||||    
T  48851380 ttcaaaaacaatggtgctggtaatggaagaaatgcaaggttgatggagaaaccaaaggat 48851439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 48311264 - 48311042
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    ||||||||||| |||||| ||||   ||||  || ||||||||||||||||||||||| |        | |||||||||||||||||||||||| | |||    
T  48311264 tttgtttaaattgtactgattttaaattttctttgtataagatgatggtgaaaattgtcaattttttatctgggttgatgaagctgaagaactatgttat 48311165  T
Q  103 tttaa-aaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggat 201  Q
    ||| | ||||||||||| |||||||||||| ||||||||||| ||||||||| | ||| |||| ||  ||||||||||||||||||||| ||||||||||    
T  48311164 ttttataaacaatggtgctggtcatggaaggaatgcaaggttaatggagaagcctaagaatagtggcggagaagaggtttggagggcaatgttgatggat 48311065  T
Q  202 aaagttgattgtgtaggaagtga 224  Q
    ||||| |||||||||||||||||    
T  48311064 aaagtcgattgtgtaggaagtga 48311042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 69323 - 69218
Alignment:
Q  119 ttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtagg 218  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  69323 ttggtcatggaagaaatgcaaggttgatggagaagccaaatgataggggcagagaagaggtttggagggcaaggttgatggataaagttcattgtgtagg 69224  T
Q  219 aagtga 224  Q
    ||||||    
T  69223 aagtga 69218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 77372 - 77252
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||  ||||| ||||||||||||||| |||| |||||| |||||||||||||       |||||||||||||||||||||||| ||||||||    
T  77372 tttgtttaaattatactgattttgtcttttgattgtataggatgattgtgaaaattgtaaattttttgtgtgggttgatgaagctgaagaattaggctat 77273  T
Q  103 tttaaaaacaatggtgttggt 123  Q
    |||||||||||||||||||||    
T  77272 tttaaaaacaatggtgttggt 77252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 6604701 - 6604619
Alignment:
Q  142 ttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||| ||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  6604701 ttgatggagaagccaaaggataggggcaaagaagaggtttgaagggcaaggttgatggataaagttgattgtataggaagtga 6604619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 23905232 - 23905282
Alignment:
Q  174 agaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23905232 agaggtttggaggacaaggttgatggataaagttgattgtgtaggaagtga 23905282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 32840610 - 32840557
Alignment:
Q  171 agaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32840610 agaataggtttggagggcaaggttgatggacaaagttgattgtgtaggaagtga 32840557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 38550254 - 38550313
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaa 62  Q
    |||||| ||||||||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  38550254 tttgttaaaatagtactgattttgtcttttgattttataggatgatggtgaaaattgtaa 38550313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 11683743 - 11683691
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||||||||| |||||||| ||| ||||||||||    
T  11683743 gaagaggtttggagggcaaggttgatggacaaagttgagtgtataggaagtga 11683691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 222
Target Start/End: Original strand, 4321800 - 4321847
Alignment:
Q  175 gaggtttggagggcaaggttgatggataaagttgattgtgtaggaagt 222  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||    
T  4321800 gaggtttggagggcaaggttgatggacaaagttgattgtataggaagt 4321847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 23905122 - 23905169
Alignment:
Q  126 tggaagaaatgcaaggttgatggagaagtcaaaggatagggggagaga 173  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||    
T  23905122 tggaagaaatgcaaggttgatggagaagccaaaggataggggcagaga 23905169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 30109185 - 30109231
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  30109185 gtgtgggttgatgaagctgaagaactaggttactttaaaaacaatgg 30109231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 29995501 - 29995546
Alignment:
Q  179 tttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||    
T  29995501 tttggaggacaaggttgatggataaagttgactgtgtaggaagtga 29995546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 6604755 - 6604699
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattg 59  Q
    |||||||||||||||||  |||| |||||||||| |||| |||||||||||||||||    
T  6604755 tttgtttaaatagtacttattttatcttttgattgtataggatgatggtgaaaattg 6604699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 48302744 - 48302790
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaatgg 116  Q
    |||||||||||| |||||||||||||||| || ||||||||||||||    
T  48302744 gtgtgggttgataaagctgaagaactaggttactttaaaaacaatgg 48302790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 34691938 - 34691889
Alignment:
Q  175 gaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||| ||||||||| |||||||||||| || |||||||    
T  34691938 gaggtttggagggcaacgttgatggacaaagttgattgtatatgaagtga 34691889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 34692067 - 34692023
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggctattttaaaaacaat 114  Q
    ||||||||||||||||||||||||||||| || ||| ||||||||    
T  34692067 gtgtgggttgatgaagctgaagaactaggttactttcaaaacaat 34692023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 40361028 - 40360976
Alignment:
Q  172 gaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    ||||| |||||||| |||||||||||||| |||||||||||| ||| ||||||    
T  40361028 gaagaagtttggagagcaaggttgatggacaaagttgattgtttagaaagtga 40360976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 45464683 - 45464636
Alignment:
Q  70 gtgtgggttgatgaagctgaagaactaggcta-ttttaaaaacaatgg 116  Q
    ||||||||||||||| ||||||||||||| || |||||||||||||||    
T  45464683 gtgtgggttgatgaaactgaagaactaggttacttttaaaaacaatgg 45464636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 27665031 - 27665076
Alignment:
Q  179 tttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||| ||||||||||||||||| || | ||||||||||||||    
T  27665031 tttggaggacaaggttgatggataaaattaactgtgtaggaagtga 27665076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 7403021 - 7402989
Alignment:
Q  187 gcaaggttgatggataaagttgattgtgtagga 219  Q
    |||||||||||||| ||||||||||||||||||    
T  7403021 gcaaggttgatggacaaagttgattgtgtagga 7402989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 107396 - 107616
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||       |||||||||||||||| |||||||||||| ||     
T  107396 tttgtttaaatagtactgattttgtcttttgattgtataggatgatggtgaaaattgtaaattttttgtgtgggttgatgaagttgaagaactaggttag 107495  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggata 202  Q
    ||||||| |||||||| |||||||||||||||||||||||||||| ||||| |||||||||| |  || |||||||||| ||||||||||||||||||||    
T  107496 tttaaaa-caatggtgctggtcatggaagaaatgcaaggttgatgaagaagccaaaggatagtgtcagcgaagaggttttgagggcaaggttgatggata 107594  T
Q  203 aagttgattgtgtaggaagtga 224  Q
    ||||||||||||||||||||||    
T  107595 aagttgattgtgtaggaagtga 107616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 871 - 677
Alignment:
Q  3 tttgtttaaatagtactggttttgtcttttgattatataagatgatggtgaaaattgtaannnnnnngtgtgggttgatgaagctgaagaactaggctat 102  Q
    |||||||||||||||||  ||||||||||||||| |||| ||||||||||||||||||||       ||||| ||||||||||||||||||||||| |||    
T  871 tttgtttaaatagtacttattttgtcttttgattgtatatgatgatggtgaaaattgtaaattttttgtgtgagttgatgaagctgaagaactaggttat 772  T
Q  103 tttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgat 197  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||    
T  771 tttaaaaacaatggtgctggtcatagaagaaatgcaaggttgatggagaagccaaatgataggggtagagaagaggtttggagggcaaggttgat 677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0920 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0920
Description:

Target: scaffold0920; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 1401 - 1548
Alignment:
Q  75 ggttgatgaagctgaagaactaggctattttaaaaacaatggtgttggtcatggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaa 174  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||  |||||||||||||||||||||||| |||||||||||||||   | | ||||    
T  1401 ggttgatgaagctgaagaactaggttattttaaaaacaatggtgatgagcatggaagaaatgcaaggttgatgcagaagtcaaaggatacttgcaaagaa 1500  T
Q  175 gaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||    
T  1501 gaggtttggagggcaaggt--atggataaagttgattgtgtaggaagtga 1548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 9460 - 9363
Alignment:
Q  127 ggaagaaatgcaaggttgatggagaagtcaaaggatagggggagagaagaggtttggagggcaaggttgatggataaagttgattgtgtaggaagtga 224  Q
    |||||||||| |||||||||||||||| |||| |||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9460 ggaagaaatgtaaggttgatggagaagccaaatgataggagcagagaagaggtttggagggcaaggttgatcgataaagttgattgtgtaggaagtga 9363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University