View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_179 (Length: 237)

Name: NF20665_low_179
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_179
NF20665_low_179
[»] chr7 (9 HSPs)
chr7 (12-220)||(2275974-2276186)
chr7 (178-220)||(4550114-4550156)
chr7 (186-220)||(15470540-15470574)
chr7 (180-220)||(5096293-5096333)
chr7 (186-220)||(27725049-27725083)
chr7 (102-168)||(27804858-27804924)
chr7 (176-220)||(20034706-20034750)
chr7 (176-220)||(24052430-24052474)
chr7 (180-220)||(39753372-39753412)
[»] chr6 (2 HSPs)
chr6 (12-178)||(1512043-1512209)
chr6 (176-220)||(13846782-13846826)
[»] chr3 (16 HSPs)
chr3 (12-178)||(1539118-1539284)
chr3 (24-178)||(54332663-54332817)
chr3 (27-178)||(22522724-22522875)
chr3 (12-147)||(6032990-6033124)
chr3 (175-219)||(46732177-46732221)
chr3 (101-178)||(19792126-19792203)
chr3 (176-220)||(21790764-21790808)
chr3 (180-220)||(33706415-33706455)
chr3 (176-220)||(37980534-37980578)
chr3 (180-220)||(44176793-44176833)
chr3 (180-220)||(44183475-44183515)
chr3 (176-219)||(35378830-35378873)
chr3 (186-221)||(49428503-49428538)
chr3 (175-220)||(22102172-22102217)
chr3 (175-211)||(18722439-18722475)
chr3 (179-219)||(39904215-39904255)
[»] scaffold0169 (1 HSPs)
scaffold0169 (25-178)||(22886-23039)
[»] chr8 (14 HSPs)
chr8 (12-178)||(44587405-44587571)
chr8 (176-220)||(37401995-37402039)
chr8 (174-221)||(8512346-8512393)
chr8 (174-221)||(8516094-8516141)
chr8 (174-221)||(8518173-8518220)
chr8 (177-220)||(38804886-38804929)
chr8 (178-220)||(25722556-25722598)
chr8 (176-220)||(415418-415462)
chr8 (180-220)||(1658153-1658193)
chr8 (180-220)||(6336100-6336140)
chr8 (180-220)||(14031539-14031579)
chr8 (180-220)||(36802121-36802161)
chr8 (176-220)||(20286788-20286832)
chr8 (176-220)||(21073417-21073461)
[»] chr2 (5 HSPs)
chr2 (176-220)||(40324155-40324199)
chr2 (186-220)||(21956498-21956532)
chr2 (176-219)||(36214011-36214054)
chr2 (180-220)||(19901656-19901696)
chr2 (175-215)||(25048196-25048236)
[»] chr4 (10 HSPs)
chr4 (175-221)||(10727149-10727195)
chr4 (175-221)||(10940918-10940964)
chr4 (180-220)||(22160601-22160641)
chr4 (180-220)||(23316150-23316190)
chr4 (176-220)||(25921222-25921266)
chr4 (175-220)||(27866439-27866484)
chr4 (176-220)||(11333061-11333105)
chr4 (176-220)||(12214842-12214886)
chr4 (176-220)||(37144056-37144100)
chr4 (176-220)||(50996293-50996337)
[»] scaffold0035 (1 HSPs)
scaffold0035 (180-220)||(82070-82110)
[»] chr5 (7 HSPs)
chr5 (176-220)||(27263611-27263655)
chr5 (176-220)||(28394439-28394483)
chr5 (180-219)||(41879578-41879617)
chr5 (177-220)||(43369889-43369932)
chr5 (175-220)||(28766048-28766093)
chr5 (175-220)||(42207590-42207635)
chr5 (176-220)||(35271879-35271923)
[»] chr1 (5 HSPs)
chr1 (175-221)||(30144135-30144180)
chr1 (175-221)||(30146879-30146924)
chr1 (137-178)||(12928525-12928566)
chr1 (176-221)||(50946470-50946515)
chr1 (176-220)||(8007193-8007237)
[»] scaffold0005 (1 HSPs)
scaffold0005 (177-221)||(254365-254409)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 2276186 - 2275974
Alignment:
Q  12 gagatgaatatgggaattttatcaaagctaaaacattgtggtccaatcccgtttgctatttggatgtaggcgaaacattgggtctttaccatgctattca 111  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| || |||||||||||||||||||||||||    
T  2276186 gagatgaatacgggaattttatcaaagctaaaacattgtggtccaaacccgtttgctattcggatgtaggcaaagcattgggtctttaccatgctattca 2276087  T
Q  112 atgggtgcgagaattacaac--attcgaatgtagattttgatttggatgccaagaaagtcgtggattatctataca--atatataaagaaaactatctct 207  Q
    |||||||||||| |||  ||   ||||||||||||||||| |||||||||||||||||| ||||||||||||||||  ||||||||||||||||| ||||    
T  2276086 atgggtgcgagatttaacacttcttcgaatgtagattttggtttggatgccaagaaagttgtggattatctatacaatatatataaagaaaactacctct 2275987  T
Q  208 ttcaacacttttg 220  Q
    |||||||| ||||    
T  2275986 ttcaacacgtttg 2275974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 4550114 - 4550156
Alignment:
Q  178 tctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||| ||||||||||||||||| |||||||||||||||||    
T  4550114 tctatactatatataaagaaaactacctctttcaacacttttg 4550156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 15470540 - 15470574
Alignment:
Q  186 atatataaagaaaactatctctttcaacacttttg 220  Q
    |||||||||||||||||||||||||||||||||||    
T  15470540 atatataaagaaaactatctctttcaacacttttg 15470574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 5096333 - 5096293
Alignment:
Q  180 tatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  5096333 tatactatatataaagaaaactatctctttcagcacttttg 5096293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 27725083 - 27725049
Alignment:
Q  186 atatataaagaaaactatctctttcaacacttttg 220  Q
    |||||||||||||| ||||||||||||||||||||    
T  27725083 atatataaagaaaattatctctttcaacacttttg 27725049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 27804924 - 27804858
Alignment:
Q  102 atgctattcaatgggtgcgagaattacaacattcgaatgtagattttgatttggatgccaagaaagt 168  Q
    |||||||||||||||| | |||| |||||| | | ||||||||||||||  ||||||| ||||||||    
T  27804924 atgctattcaatgggtacaagaactacaacttacaaatgtagattttgagatggatgcaaagaaagt 27804858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 20034706 - 20034750
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| ||||||||||||||||| |||||||| | ||||||    
T  20034706 tatctatactatatataaagaaaactacctctttcagctcttttg 20034750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 24052474 - 24052430
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| |||||||| ||||| ||||||||||| ||||||||    
T  24052474 tatctatactatatataaggaaaattatctctttcagcacttttg 24052430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 39753412 - 39753372
Alignment:
Q  180 tatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||| |||||||||||||||||||| ||||| ||||||||    
T  39753412 tatactatatataaagaaaactatctttttcagcacttttg 39753372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 1512043 - 1512209
Alignment:
Q  12 gagatgaatatgggaattttatcaaagctaaaacattgtggtccaatcccgtttgctatttggatgtaggcgaaacattgggtctttaccatgctattca 111  Q
    ||||||||||  ||||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||| |||||||||||||||||||||||||    
T  1512043 gagatgaatacaggaattttatcaaagctaaaacattgtggtcgattcccgtttgctcttcggatgtaggcgaagcattgggtctttaccatgctattca 1512142  T
Q  112 atgggtgcgagaattacaacattcgaatgtagattttgatttggatgccaagaaagtcgtggattat 178  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||    
T  1512143 atgggtgcgagaattacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattat 1512209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 13846782 - 13846826
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||  ||||||||| |||||||||||||||| ||||||||    
T  13846782 tatctatattatatataaataaaactatctctttcagcacttttg 13846826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 1539284 - 1539118
Alignment:
Q  12 gagatgaatatgggaattttatcaaagctaaaacattgtggtccaatcccgtttgctatttggatgtaggcgaaacattgggtctttaccatgctattca 111  Q
    ||||||||||   |||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||| |||| ||||||||||||||||||||    
T  1539284 gagatgaatacatgaattttatcaaagctaaaacattgtggtcgattcccgtttgctctttggatgtaggcgaagcattaggtctttaccatgctattca 1539185  T
Q  112 atgggtgcgagaattacaacattcgaatgtagattttgatttggatgccaagaaagtcgtggattat 178  Q
    || ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||    
T  1539184 ataggtgcgagaattacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattat 1539118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 54332817 - 54332663
Alignment:
Q  24 ggaattttatcaaagctaaaacattgtggtccaatcccgtttgctatttggatgtaggcgaaacattgggtctttaccatgctattcaatgggtgcgaga 123  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| ||||| | |||| ||||||||||||||||||    
T  54332817 ggaattttatcaaagctaaaacattgtggtcgaatcccgtttgctctttggatgtaggcgaagcattgagtcttcatcatgatattcaatgggtgcgaga 54332718  T
Q  124 attacaacattcgaatgtagattttgatttggatgccaagaaagtcgtggattat 178  Q
    |||||||| ||| || ||||||||||| || ||  |||||||||| |||||||||    
T  54332717 attacaactttcaaacgtagattttgagtttgacaccaagaaagttgtggattat 54332663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 178
Target Start/End: Complemental strand, 22522875 - 22522724
Alignment:
Q  27 attttatcaaagctaaaacattgtggtccaatcccgtttgctatttggatgtaggcgaaacattgggtctttaccatgctattcaatgggtgcgagaatt 126  Q
    |||||||||||||||| ||||||||  | |||||||||| || || |||||||||| || |||||||||||||| ||||||||||||||||||| |||||    
T  22522875 attttatcaaagctaacacattgtgtccgaatcccgttttctcttcggatgtaggcaaagcattgggtctttacaatgctattcaatgggtgcgggaatt 22522776  T
Q  127 acaacattcgaatgtagattttgatttggatgccaagaaagtcgtggattat 178  Q
    ||||| ||||||  |||||||||| ||||| ||||||||||| ||| |||||    
T  22522775 acaactttcgaacatagattttgagttggacgccaagaaagttgtgtattat 22522724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 6033124 - 6032990
Alignment:
Q  12 gagatgaatatgggaattttatcaaagctaaaacattgtggtccaatcccgtttgctatttggatgtaggcgaaacattgggtctttaccatgctattca 111  Q
    |||||||| | |||||||| ||||||||||||||||||||||| |||||| |||||| || |||||| |||||| ||||  ||| |||||||||||||||    
T  6033124 gagatgaacacgggaattt-atcaaagctaaaacattgtggtcgaatcccatttgctcttcggatgttggcgaagcattccgtccttaccatgctattca 6033026  T
Q  112 atgggtgcgagaattacaacattcgaatgtagattt 147  Q
    |||||||||||||||||||  |||||| ||||||||    
T  6033025 atgggtgcgagaattacaattttcgaacgtagattt 6032990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 46732221 - 46732177
Alignment:
Q  175 ttatctatacaatatataaagaaaactatctctttcaacactttt 219  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||    
T  46732221 ttatctatactatatataaagaaaactatctctttcaacattttt 46732177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 19792126 - 19792203
Alignment:
Q  101 catgctattcaatgggtgcgagaattacaacattcgaatgtagattttgatttggatgccaagaaagtcgtggattat 178  Q
    |||||||| ||||||||||  ||| |||||| | | ||||| ||||| || ||||||||||||||||| |||||||||    
T  19792126 catgctatacaatgggtgcaggaactacaacttcctaatgttgatttcgagttggatgccaagaaagttgtggattat 19792203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 21790808 - 21790764
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| ||||||||||||||||| ||||||||| |||||||    
T  21790808 tatctatactatatataaagaaaactacctctttcaatacttttg 21790764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 33706455 - 33706415
Alignment:
Q  180 tatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  33706455 tatactatatataaagaaaactatctctttcagcacttttg 33706415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 37980534 - 37980578
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| |||||||||||||||||||||||||| || |||||    
T  37980534 tatctatactatatataaagaaaactatctctttcagcatttttg 37980578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 44176833 - 44176793
Alignment:
Q  180 tatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  44176833 tatactatatataaagaaaactatctctttcagcacttttg 44176793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 44183515 - 44183475
Alignment:
Q  180 tatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  44183515 tatactatatataaagaaaactatctctttcagcacttttg 44183475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 35378830 - 35378873
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacactttt 219  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||    
T  35378830 tatctatactatatatatagaaaattatctctttcaacactttt 35378873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 49428538 - 49428503
Alignment:
Q  186 atatataaagaaaactatctctttcaacacttttga 221  Q
    |||||||||||||||||||||||||| |||||||||    
T  49428538 atatataaagaaaactatctctttcagcacttttga 49428503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 22102172 - 22102217
Alignment:
Q  175 ttatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||| |||| ||||||||||||||||||| |||||| ||||||||    
T  22102172 ttatcaatactatatataaagaaaactatccctttcagcacttttg 22102217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 18722475 - 18722439
Alignment:
Q  175 ttatctatacaatatataaagaaaactatctctttca 211  Q
    |||||||||||||||||||||||||||| | ||||||    
T  18722475 ttatctatacaatatataaagaaaactacccctttca 18722439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 39904255 - 39904215
Alignment:
Q  179 ctatacaatatataaagaaaactatctctttcaacactttt 219  Q
    |||||| |||||||||||||||||  |||||||||||||||    
T  39904255 ctatactatatataaagaaaactacatctttcaacactttt 39904215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 25 - 178
Target Start/End: Complemental strand, 23039 - 22886
Alignment:
Q  25 gaattttatcaaagctaaaacattgtggtccaatcccgtttgctatttggatgtaggcgaaacattgggtctttaccatgctattcaatgggtgcgagaa 124  Q
    |||||||||||||||||||||||||||||| | ||||||||||| || ||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  23039 gaattttatcaaagctaaaacattgtggtcgattcccgtttgctcttcggatgtaggcgaagcattgggtctttaccatgctatgcaatgggtgcgagaa 22940  T
Q  125 ttacaacattcgaatgtagattttgatttggatgccaagaaagtcgtggattat 178  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| |||||||||    
T  22939 ttacaactttcgaatgtagattttgagttggatgccaagaaagttgtggattat 22886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 178
Target Start/End: Original strand, 44587405 - 44587571
Alignment:
Q  12 gagatgaatatgggaattttatcaaagctaaaacattgtggtccaatcccgtttgctatttggatgtaggcgaaacattgggtctttaccatgctattca 111  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||| |||||||||||||||||| ||||||    
T  44587405 gagatgaatacaggaattttatcaaagctaaaacattgtggtcgaatcccgtttgctcttcggatgtaggcgaagcattgggtctttaccatgatattca 44587504  T
Q  112 atgggtgcgagaattacaacattcgaatgtagattttgatttggatgccaagaaagtcgtggattat 178  Q
    |||||||||||||||||||| ||| || |||||||||||  |||| ||||||||||| |||||||||    
T  44587505 atgggtgcgagaattacaactttcaaacgtagattttgagatggacgccaagaaagttgtggattat 44587571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 37402039 - 37401995
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||    
T  37402039 tatctatactatatataaagaaaactatctctttcagcacttttg 37401995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 8512393 - 8512346
Alignment:
Q  174 attatctatacaatatataaagaaaactatctctttcaacacttttga 221  Q
    ||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  8512393 attatctatactatatataaagaaaactacctctttcaactcttttga 8512346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 8516141 - 8516094
Alignment:
Q  174 attatctatacaatatataaagaaaactatctctttcaacacttttga 221  Q
    ||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  8516141 attatctatactatatataaagaaaactacctctttcaactcttttga 8516094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 8518220 - 8518173
Alignment:
Q  174 attatctatacaatatataaagaaaactatctctttcaacacttttga 221  Q
    ||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  8518220 attatctatactatatataaagaaaactacctctttcaactcttttga 8518173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 38804929 - 38804886
Alignment:
Q  177 atctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    |||||||| ||||||||||||||||||| |||||||||||||||    
T  38804929 atctatactatatataaagaaaactatccctttcaacacttttg 38804886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 25722556 - 25722598
Alignment:
Q  178 tctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||| |||||||||||||||||||||||||| ||||||||    
T  25722556 tctatactatatataaagaaaactatctctttcagcacttttg 25722598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 415418 - 415462
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||||    
T  415418 tatctatactatatataaagaaaactatatctttcaccacttttg 415462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 1658153 - 1658193
Alignment:
Q  180 tatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  1658153 tatactatatataaagaaaactatctctttcagcacttttg 1658193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 6336100 - 6336140
Alignment:
Q  180 tatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  6336100 tatactatatataaagaaaactatctctttcagcacttttg 6336140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 14031579 - 14031539
Alignment:
Q  180 tatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  14031579 tatactatatataaagaaaactatctctttcagcacttttg 14031539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 36802121 - 36802161
Alignment:
Q  180 tatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  36802121 tatactatatataaagaaaactatctctttcagcacttttg 36802161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 20286832 - 20286788
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| ||||||||||||||| |||||||||| | ||||||    
T  20286832 tatctatactatatataaagaaaacaatctctttcagctcttttg 20286788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 21073461 - 21073417
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| ||||||||||||||| |||||||||| | ||||||    
T  21073461 tatctatactatatataaagaaaacaatctctttcagctcttttg 21073417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 40324199 - 40324155
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||    
T  40324199 tatctatactatatataaagaaaactatctctttcagcacttttg 40324155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 21956498 - 21956532
Alignment:
Q  186 atatataaagaaaactatctctttcaacacttttg 220  Q
    |||||||||||||||||||||||||||||||||||    
T  21956498 atatataaagaaaactatctctttcaacacttttg 21956532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 36214011 - 36214054
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacactttt 219  Q
    ||||||||  |||||||||||||||||||||||||| |||||||    
T  36214011 tatctatattatatataaagaaaactatctctttcagcactttt 36214054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 19901696 - 19901656
Alignment:
Q  180 tatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||| ||||||||||||||||||| |||||| ||||||||    
T  19901696 tatactatatataaagaaaactatcactttcatcacttttg 19901656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 25048236 - 25048196
Alignment:
Q  175 ttatctatacaatatataaagaaaactatctctttcaacac 215  Q
    |||||||||| ||||||||||||||||| | ||||||||||    
T  25048236 ttatctatactatatataaagaaaactacccctttcaacac 25048196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 10727149 - 10727195
Alignment:
Q  175 ttatctatacaatatataaagaaaactatctctttcaacacttttga 221  Q
    |||||||||| ||||||||||||||||| |||||||| |||||||||    
T  10727149 ttatctatactatatataaagaaaactacctctttcagcacttttga 10727195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 10940918 - 10940964
Alignment:
Q  175 ttatctatacaatatataaagaaaactatctctttcaacacttttga 221  Q
    |||||||||| ||||||||||||||||| |||||||| |||||||||    
T  10940918 ttatctatactatatataaagaaaactacctctttcagcacttttga 10940964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 22160601 - 22160641
Alignment:
Q  180 tatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  22160601 tatactatatataaagaaaactatctctttcagcacttttg 22160641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 23316150 - 23316190
Alignment:
Q  180 tatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  23316150 tatactatatataaagaaaactatctctttcagcacttttg 23316190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 25921222 - 25921266
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| |||||||||||||||||| ||||||| ||||||||    
T  25921222 tatctatactatatataaagaaaactatttctttcagcacttttg 25921266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 27866484 - 27866439
Alignment:
Q  175 ttatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    |||||||||| ||||||||||||||||||| |||| | ||||||||    
T  27866484 ttatctatactatatataaagaaaactatcccttttagcacttttg 27866439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 11333061 - 11333105
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| ||||||||||||||||| | |||||| ||||||||    
T  11333061 tatctatactatatataaagaaaactacccctttcagcacttttg 11333105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 12214886 - 12214842
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| || |||||||||||||| | |||||||||||||||    
T  12214886 tatctatactatgtataaagaaaactacccctttcaacacttttg 12214842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 37144100 - 37144056
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| ||||||||||||||||| | |||||| ||||||||    
T  37144100 tatctatactatatataaagaaaactacccctttcagcacttttg 37144056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 50996293 - 50996337
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||| ||| |||||||||||||||||| ||||||| ||||||||    
T  50996293 tatctctacgatatataaagaaaactatatctttcagcacttttg 50996337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 82070 - 82110
Alignment:
Q  180 tatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||| |||||||||||||||||||||||||| ||||||||    
T  82070 tatactatatataaagaaaactatctctttcagcacttttg 82110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 27263655 - 27263611
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| |||||||||||||||||||||||||| || |||||    
T  27263655 tatctatactatatataaagaaaactatctctttcagcaattttg 27263611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 28394483 - 28394439
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| |||||||||||||||||||||||| | ||||||||    
T  28394483 tatctatactatatataaagaaaactatctcttttagcacttttg 28394439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 41879617 - 41879578
Alignment:
Q  180 tatacaatatataaagaaaactatctctttcaacactttt 219  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  41879617 tatactatatataaagaaaactatctctttcagcactttt 41879578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 43369889 - 43369932
Alignment:
Q  177 atctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    |||||||| |||||||||||||||||  ||||||||||||||||    
T  43369889 atctatactatatataaagaaaactacttctttcaacacttttg 43369932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 28766048 - 28766093
Alignment:
Q  175 ttatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    |||||||||| |||| ||||||||||||  ||||||||||||||||    
T  28766048 ttatctatactatatgtaaagaaaactacttctttcaacacttttg 28766093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 42207590 - 42207635
Alignment:
Q  175 ttatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    |||||||||| |||||| ||||||||||||||||||| | ||||||    
T  42207590 ttatctatactatatattaagaaaactatctctttcagctcttttg 42207635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 35271879 - 35271923
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| ||||||||||||||||| || ||||| ||||||||    
T  35271879 tatctatactatatataaagaaaactacctttttcagcacttttg 35271923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 30144180 - 30144135
Alignment:
Q  175 ttatctatacaatatataaagaaaactatctctttcaacacttttga 221  Q
    |||||||||| |||||||||||||| |||| ||||||||||||||||    
T  30144180 ttatctatactatatataaagaaaattatc-ctttcaacacttttga 30144135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 30146924 - 30146879
Alignment:
Q  175 ttatctatacaatatataaagaaaactatctctttcaacacttttga 221  Q
    |||||||||| |||||||||||||| |||| ||||||||||||||||    
T  30146924 ttatctatactatatataaagaaaattatc-ctttcaacacttttga 30146879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 12928525 - 12928566
Alignment:
Q  137 aatgtagattttgatttggatgccaagaaagtcgtggattat 178  Q
    ||||| |||||||| ||||||||||||||||| |||||||||    
T  12928525 aatgtggattttgaattggatgccaagaaagttgtggattat 12928566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 50946515 - 50946470
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttga 221  Q
    ||||||||| |||||||||||||||||  ||||||| |||||||||    
T  50946515 tatctatactatatataaagaaaactacatctttcagcacttttga 50946470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 8007193 - 8007237
Alignment:
Q  176 tatctatacaatatataaagaaaactatctctttcaacacttttg 220  Q
    ||||||||| ||| ||||||||||||||| |||||| ||||||||    
T  8007193 tatctatactatacataaagaaaactatccctttcagcacttttg 8007237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 254365 - 254409
Alignment:
Q  177 atctatacaatatataaagaaaactatctctttcaacacttttga 221  Q
    |||||||| ||||||||||||||||| | |||||| |||||||||    
T  254365 atctatactatatataaagaaaactacccctttcagcacttttga 254409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University