View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_180 (Length: 237)
Name: NF20665_low_180
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_180 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 34777155 - 34776945
Alignment:
| Q |
12 |
aagaacaaatttgggaaattaatttgtaacaggaagtgataaatactattaacttgactctctgaatcgaaaattattaattcggaatttataacattgc |
111 |
Q |
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| T |
34777155 |
aagaacaaatttgggaaattaatttgtaacaggaagtgataaatactattaacttgactctctgaatcgaaacttattaattcggaatttataactttgc |
34777056 |
T |
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| Q |
112 |
agcaacttcaggatcaaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttc |
211 |
Q |
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| T |
34777055 |
agcaacttcaggatcaaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttc |
34776956 |
T |
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| Q |
212 |
ccattcttgct |
222 |
Q |
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||||||||||| |
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| T |
34776955 |
ccattcttgct |
34776945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 34785206 - 34785111
Alignment:
| Q |
127 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgct |
222 |
Q |
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| T |
34785206 |
aaggataaacttcaacgagagacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgct |
34785111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 11467270 - 11467362
Alignment:
| Q |
127 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattctt |
219 |
Q |
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| T |
11467270 |
aaggataaacttctataagagacttgaagccacatattggagtaatcttgtagctactgaaacctgcatcatatatgagtttcttccattctt |
11467362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 11487927 - 11487837
Alignment:
| Q |
129 |
ggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattctt |
219 |
Q |
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| T |
11487927 |
ggataaacttctatgagtgacttgaagccacatattggagtaatcttgtagctgctgaagccagcgtcatagatgagtttcttccattctt |
11487837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 219
Target Start/End: Complemental strand, 11524603 - 11524511
Alignment:
| Q |
127 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattctt |
219 |
Q |
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| T |
11524603 |
aaggataaacttctataagagacttgaagccacatattggagtaatcttgtagctgctgaagccagcgtcatagatgagtttcttccattctt |
11524511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 11508386 - 11508296
Alignment:
| Q |
129 |
ggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattctt |
219 |
Q |
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||||| ||||||||||| |||||||| || | || || ||||| || |||||||| |||||||| || |||||||||| |||||||||| |
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| T |
11508386 |
ggatatacttcgatgagagacttgaaaccgcatataggtgtaatcttatagctgctgaaacctgcgtcgaatatgagtttctcccattctt |
11508296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 219
Target Start/End: Original strand, 11441502 - 11441594
Alignment:
| Q |
127 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattctt |
219 |
Q |
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| T |
11441502 |
aaggataaacttcgatgatagatttgaagccgcatataggtgtaatcttatagctgctgaagcctgcgtcgaatatgagtttctcccattctt |
11441594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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