View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_182 (Length: 237)

Name: NF20665_low_182
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_182
NF20665_low_182
[»] chr1 (1 HSPs)
chr1 (1-170)||(32877000-32877169)
[»] chr3 (3 HSPs)
chr3 (5-99)||(20000621-20000715)
chr3 (6-106)||(8820477-8820577)
chr3 (7-47)||(47437626-47437666)
[»] chr8 (1 HSPs)
chr8 (22-113)||(26568623-26568714)
[»] chr5 (1 HSPs)
chr5 (6-76)||(28076093-28076163)
[»] chr2 (1 HSPs)
chr2 (6-58)||(19038061-19038113)
[»] scaffold0001 (1 HSPs)
scaffold0001 (6-87)||(510075-510156)
[»] chr7 (1 HSPs)
chr7 (6-73)||(18573682-18573749)


Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 32877000 - 32877169
Alignment:
Q  1 tttggatcttgaacaaggtatttttcatctaaatcttatttagagtgatcttgaaatttcacctaaaacattttactaaacagctcatctatcgtaatta 100  Q
    |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  32877000 tttggatcttaaacaaggtatttttcatttaagtcttatttagagtgatcttgaaatttcacctaaaacattttactgaacaactcatctatcgtaatta 32877099  T
Q  101 atttgtttttacaagcatgnnnnnnnttagagattaactccctaactcgttttacggactctttaatgga 170  Q
    |||||||||||||| ||||       |||||||||||||||| | |||||||||||||||||||||||||    
T  32877100 atttgtttttacaaacatgaaaaaaattagagattaactcccgatctcgttttacggactctttaatgga 32877169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 20000621 - 20000715
Alignment:
Q  5 gatcttgaacaaggtatttttcatctaaatcttatttagagtgatcttgaaatttcacctaaaacattttactaaacagctcatctatcgtaatt 99  Q
    |||||| ||||  ||||||| ||||||| ||||||| |||||| |||||||||| ||||||| |||||| ||  |||||||||||||| ||||||    
T  20000621 gatcttaaacagtgtattttacatctaagtcttattcagagtgctcttgaaattccacctaagacatttcaccgaacagctcatctattgtaatt 20000715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 8820577 - 8820477
Alignment:
Q  6 atcttgaacaaggtatttttcatctaaatcttatttagagtgatcttgaaatttcacctaaaacattttactaaacagctcatctatcgtaattaatttg 105  Q
    ||||||||||| ||||||||||||||| ||||||| |||||| ||||| |||||||| ||  ||||| |||| | ||||||| || | |||||||| |||    
T  8820577 atcttgaacaatgtatttttcatctaagtcttattcagagtgctcttggaatttcacataggacattctactgagcagctcacctgttgtaattaacttg 8820478  T
Q  106 t 106  Q
    |    
T  8820477 t 8820477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 47437666 - 47437626
Alignment:
Q  7 tcttgaacaaggtatttttcatctaaatcttatttagagtg 47  Q
    |||||||||| |||| |||||||||| ||||||||||||||    
T  47437666 tcttgaacaatgtatctttcatctaagtcttatttagagtg 47437626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 26568623 - 26568714
Alignment:
Q  22 ttttcatctaaatcttatttagagtgatcttgaaatttcacctaaaacattttactaaacagctcatctatcgtaattaatttgtttttaca 113  Q
    ||||||||||| |||||||||||||| ||||  |||| | |||| ||||||| ||| |||||||||||| | |||||||| |||| ||||||    
T  26568623 ttttcatctaagtcttatttagagtgctcttagaattcctcctagaacatttcactcaacagctcatctgttgtaattaacttgtgtttaca 26568714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 28076093 - 28076163
Alignment:
Q  6 atcttgaacaaggtatttttcatctaaatcttatttagagtgatcttgaaatttcacctaaaacattttac 76  Q
    ||||| ||||| ||||||| ||||||||||||||| |||||| ||||||||||||| |||| | |||||||    
T  28076093 atcttaaacaatgtattttacatctaaatcttattcagagtgctcttgaaatttcatctaagatattttac 28076163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 19038113 - 19038061
Alignment:
Q  6 atcttgaacaaggtatttttcatctaaatcttatttagagtgatcttgaaatt 58  Q
    ||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||    
T  19038113 atcttgaacaatgtatttttcatctaagtcttattcagagtgctcttgaaatt 19038061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 510075 - 510156
Alignment:
Q  6 atcttgaacaaggtatttttcatctaaatcttatttagagtgatcttgaaatttcacctaaaacattttactaaacagctca 87  Q
    ||||||||||| ||||||||||||||| ||||||| | |||| ||||| |||| |||||   | |||||||||| |||||||    
T  510075 atcttgaacaatgtatttttcatctaagtcttattcaaagtgctcttggaattccaccttggatattttactaagcagctca 510156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 18573682 - 18573749
Alignment:
Q  6 atcttgaacaaggtatttttcatctaaatcttatttagagtgatcttgaaatttcacctaaaacattt 73  Q
    ||||||||||| ||||||||||||||| ||||||| | |||| ||||| ||||  |||||| ||||||    
T  18573682 atcttgaacaatgtatttttcatctaagtcttattcaaagtgctcttggaattctacctaagacattt 18573749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University