View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_185 (Length: 236)

Name: NF20665_low_185
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_185
NF20665_low_185
[»] chr4 (8 HSPs)
chr4 (4-236)||(26646291-26646523)
chr4 (97-230)||(13683421-13683555)
chr4 (97-230)||(22187897-22188031)
chr4 (97-198)||(26646620-26646721)
chr4 (117-218)||(33078057-33078158)
chr4 (16-101)||(33078305-33078390)
chr4 (97-230)||(13689748-13689867)
chr4 (16-101)||(24409774-24409859)
[»] chr8 (7 HSPs)
chr8 (99-230)||(36991690-36991822)
chr8 (16-101)||(34592692-34592777)
chr8 (16-101)||(36996592-36996677)
chr8 (101-230)||(36996850-36996968)
chr8 (16-101)||(37006425-37006510)
chr8 (169-218)||(34592496-34592545)
chr8 (187-230)||(37006690-37006733)
[»] chr7 (1 HSPs)
chr7 (97-147)||(8596620-8596671)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 26646523 - 26646291
Alignment:
Q  4 ggagaagcatagggtaaacttgatttttgctgtaaatagatgggtttttcctattttgttaactacttgatagaaactgtttgtggctgcagcaaaatta 103  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26646523 ggagaagcaaaaggtaaacttgatttttgctgtaaatagatcggtttttcttattttgttaactacttgatagaaactgtttgtggctgcagcaaaatta 26646424  T
Q  104 gttaataataaaagtgtgatacaatagtgttgctaggcttttggcttgatatacagtagactgttcaggctgatcatattctaattatttatttaatgga 203  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26646423 gttaataataaaagtgtgatacattagtgttgctaggcttttggcttgatatacagtagactgttcaggctgatcatattctaattatttatttaatgga 26646324  T
Q  204 tgcaggaataaaattgaggtgaacttttctctc 236  Q
    ||||||||||||||||||||||||||| |||||    
T  26646323 tgcaggaataaaattgaggtgaactttactctc 26646291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 13683421 - 13683555
Alignment:
Q  97 aaaattagttaataataaaa-gtgtgatacaatagtgttgctaggcttttggcttgatatacagtagactgttcaggctgatcatattctaattatttat 195  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  13683421 aaaattagttaataataaaaagtgtgatacaatagtgttgctaggcttttggcttgatacccagtagactgtgcaggctgatcatattctaattatttat 13683520  T
Q  196 ttaatggatgcaggaataaaattgaggtgaacttt 230  Q
    |||||||||||||||||||||||||||||||||||    
T  13683521 ttaatggatgcaggaataaaattgaggtgaacttt 13683555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 97 - 230
Target Start/End: Complemental strand, 22188031 - 22187897
Alignment:
Q  97 aaaattagttaataataaaa-gtgtgatacaatagtgttgctaggcttttggcttgatatacagtagactgttcaggctgatcatattctaattatttat 195  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||    
T  22188031 aaaactagttaataataaaaagtgtgatacaatagtgttgctaggcttttggcttgatatccagtagactgtgcaggctgatcatattctaattatctat 22187932  T
Q  196 ttaatggatgcaggaataaaattgaggtgaacttt 230  Q
    |||||||||||||||||||||||||||| ||||||    
T  22187931 ttaatggatgcaggaataaaattgaggtaaacttt 22187897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 26646721 - 26646620
Alignment:
Q  97 aaaattagttaataataaaagtgtgatacaatagtgttgctaggcttttggcttgatatacagtagactgttcaggctgatcatattctaattatttatt 196  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||    
T  26646721 aaaattagttaatagtaaaagtgtgatacaatagtgttgttaggcttttggcttgatatccagtagaccgtgcaggctgatcatattctaattatttatt 26646622  T
Q  197 ta 198  Q
    ||    
T  26646621 ta 26646620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 33078057 - 33078158
Alignment:
Q  117 gtgtgatacaatagtgttgctaggcttttggcttgatatacagtagactgttcaggctgatcatattctaattatttatttaatggatgcaggaataaaa 216  Q
    ||||||| ||||||||||||||||||||||||||| |||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33078057 gtgtgatgcaatagtgttgctaggcttttggcttgttatctagtagactgtgcaggctgatcatattctaattatttatttaatggatgcaggaataaaa 33078156  T
Q  217 tt 218  Q
    ||    
T  33078157 tt 33078158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 33078305 - 33078390
Alignment:
Q  16 ggtaaacttgatttttgctgtaaatagatgggtttttcctattttgttaactacttgatagaaactgtttgtggctgcagcaaaat 101  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  33078305 ggtaaacttgattttggctgtaaatagatgggtttttcttattttgttaactacttgatagaaactgtctgtggctgcagcaaaat 33078390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 13689748 - 13689867
Alignment:
Q  97 aaaattagttaataataaaa-gtgtgatacaatagtgttgctaggcttttggcttgatatacagtagactgttcaggctgatcatattctaattatttat 195  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||               | ||| |||||||||||||||||||||||||||    
T  13689748 aaaattagttaataataaaaagtgtgatacaatagtgttgctaggcttttgg---------------aatgtgcaggctgatcatattctaattatttat 13689832  T
Q  196 ttaatggatgcaggaataaaattgaggtgaacttt 230  Q
    ||||||||||||||||||||||| |||||||||||    
T  13689833 ttaatggatgcaggaataaaattaaggtgaacttt 13689867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 24409859 - 24409774
Alignment:
Q  16 ggtaaacttgatttttgctgtaaatagatgggtttttcctattttgttaactacttgatagaaactgtttgtggctgcagcaaaat 101  Q
    ||||| ||||| ||| ||||||||| |||||||||||| || |||||||||| |||  ||||||||||||||||||||||||||||    
T  24409859 ggtaatcttgaatttggctgtaaatggatgggtttttcttactttgttaactgcttactagaaactgtttgtggctgcagcaaaat 24409774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 99 - 230
Target Start/End: Complemental strand, 36991822 - 36991690
Alignment:
Q  99 aattagttaataataaaa-gtgtgatacaatagtgttgctaggcttttggcttgatatacagtagactgttcaggctgatcatattctaattatttattt 197  Q
    ||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  36991822 aattacttaataataaaaagtgtgatgcaacagtgttgctaggcttttggcttgatatccagtagactgtgcaggctgatcatattctaattatttattt 36991723  T
Q  198 aatggatgcaggaataaaattgaggtgaacttt 230  Q
    |||||||||||| | |||||| | |||||||||    
T  36991722 aatggatgcaggcaaaaaattaaagtgaacttt 36991690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 34592692 - 34592777
Alignment:
Q  16 ggtaaacttgatttttgctgtaaatagatgggtttttcctattttgttaactacttgatagaaactgtttgtggctgcagcaaaat 101  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  34592692 ggtaaacttgattttggctgtaaatagatgggtttttcttattttgttaactacttgatagaaactgtttgtggctgcagaaaaat 34592777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 36996677 - 36996592
Alignment:
Q  16 ggtaaacttgatttttgctgtaaatagatgggtttttcctattttgttaactacttgatagaaactgtttgtggctgcagcaaaat 101  Q
    ||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||  ||||||||||||||||||||||| ||||    
T  36996677 ggtaaacttgattttggctgtaaatagatgggtttttcttattttcttaactacttactagaaactgtttgtggctgcagctaaat 36996592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 101 - 230
Target Start/End: Complemental strand, 36996968 - 36996850
Alignment:
Q  101 ttagttaataataaaa-gtgtgatacaatagtgttgctaggcttttggcttgatatacagtagactgttcaggctgatcatattctaattatttatttaa 199  Q
    |||||||||||||||| ||||||||||||||||| | ||||||||| ||||||||| |||            ||||||||||||||||||||||||||||    
T  36996968 ttagttaataataaaaagtgtgatacaatagtgtcggtaggctttttgcttgatatccag------------gctgatcatattctaattatttatttaa 36996881  T
Q  200 tggatgcaggaataaaattgaggtgaacttt 230  Q
    |||||||||||||||||||||||| ||||||    
T  36996880 tggatgcaggaataaaattgaggtaaacttt 36996850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 37006510 - 37006425
Alignment:
Q  16 ggtaaacttgatttttgctgtaaatagatgggtttttcctattttgttaactacttgatagaaactgtttgtggctgcagcaaaat 101  Q
    |||||| |||||||| |||||||||||||||||||||| |||||||||| ||||||  ||||||||||||||||||||||||||||    
T  37006510 ggtaaatttgattttggctgtaaatagatgggtttttcttattttgttagctacttactagaaactgtttgtggctgcagcaaaat 37006425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 34592496 - 34592545
Alignment:
Q  169 caggctgatcatattctaattatttatttaatggatgcaggaataaaatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34592496 caggctgatcatattctaattatttatttaatggatgcaggcataaaatt 34592545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 37006733 - 37006690
Alignment:
Q  187 attatttatttaatggatgcaggaataaaattgaggtgaacttt 230  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  37006733 attatttatttaatggatgcaggaataaaattgaggtaaacttt 37006690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 8596671 - 8596620
Alignment:
Q  97 aaaattagttaataataaaa-gtgtgatacaatagtgttgctaggcttttgg 147  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||||||||||    
T  8596671 aaaattagtttataataaaaagtgtgatacaacagtgttgctaggcttttgg 8596620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University