View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_19 (Length: 526)
Name: NF20665_low_19
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 53042823 - 53043338
Alignment:
| Q |
1 |
gtctgcaaagggaaacatgttgtgtatgtcaaagaggcaagtttgatattattcccctgttattgattcattaaggtttgagacttgcacattattagta |
100 |
Q |
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| T |
53042823 |
gtctgcaaagggaaacatgttgtgtatgtcaaagaggcaagtttgatattattcccctgttattgattcattgaggtttgagacttgcacattattagta |
53042922 |
T |
|
| Q |
101 |
tagacaatcacacatatataaacgctagtttctaccttttgattaaatatttatattggttataggttccttttgctcgatcttcactcaaccatgatga |
200 |
Q |
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| T |
53042923 |
tagacaatcacacatatataaacgctagtttctaccttttgattaaatatttatattggttataggttccttttgctcgatcttcactcaaccatgatga |
53043022 |
T |
|
| Q |
201 |
tatttttattctggatactgagtcaaaaatcttccaatttaatggttccaattcatctattcaagaaagggctaaagcattggaagttgttcaatatatt |
300 |
Q |
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| T |
53043023 |
tatttttattcttgatactgagtcaaaaatcttccaatttaatggttccaattcatctattcaagaaagggctaaagcattggaagttgttcaatatatt |
53043122 |
T |
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| Q |
301 |
aaggatacctaccatgatgggaaatgtgaagtggcttctattggtaagtttactattatatttggatgttctaaaggtcattgttgtgtatcggatgttt |
400 |
Q |
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| T |
53043123 |
aaggatacctaccatgatgggaaatgtgaagtggcttctattggtaagtttactattatatttggatgttctaaaggtcattgttgtgtatcggatgttt |
53043222 |
T |
|
| Q |
401 |
acatttgaatttccatgaagaggatggaaggttgatggctgactctgaatctggagaattctggggtttgtttggtggctttgctcctcttccgcgtaaa |
500 |
Q |
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| T |
53043223 |
acatttgaatttccatgaagaggatggaaggttgatggctgactctgaatctggagaattctggggtttgtttggtggctttgctcctcttccgcgtaaa |
53043322 |
T |
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| Q |
501 |
acagtcagtgatgatg |
516 |
Q |
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| T |
53043323 |
acagtcagtgatgatg |
53043338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 159 - 349
Target Start/End: Complemental strand, 15964905 - 15964715
Alignment:
| Q |
159 |
gttataggttccttttgctcgatcttcactcaaccatgatgatatttttattctggatactgagtcaaaaatcttccaatttaatggttccaattcatct |
258 |
Q |
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| T |
15964905 |
gttataggttccttttgctcgatcttcactaaaccatgatgatatttttgttcttgacaccgagtcaaaaatcttccaatttaatggttccaattcatct |
15964806 |
T |
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| Q |
259 |
attcaagaaagggctaaagcattggaagttgttcaatatattaaggatacctaccatgatgggaaatgtgaagtggcttctattggtaagt |
349 |
Q |
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| T |
15964805 |
attcaagaaagagctaaagctttggaggttgtacagtatattaaggatacctaccatgaggggaaatgcgagatagctgctattggtaagt |
15964715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 405 - 512
Target Start/End: Complemental strand, 15964655 - 15964548
Alignment:
| Q |
405 |
ttgaatttccatgaagaggatggaaggttgatggctgactctgaatctggagaattctggggtttgtttggtggctttgctcctcttccgcgtaaaacag |
504 |
Q |
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| T |
15964655 |
ttgaacttccaagcagaggatggaaagttaatggctgatcctgaaactggggaattctggggtttctttggcggatttgctcctcttccacgaaaagcag |
15964556 |
T |
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| Q |
505 |
tcagtgat |
512 |
Q |
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| T |
15964555 |
ccagtgat |
15964548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 15965063 - 15965023
Alignment:
| Q |
4 |
tgcaaagggaaacatgttgtgtatgtcaaagaggcaagttt |
44 |
Q |
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| T |
15965063 |
tgcagagggaaacatgttgtacatgtcaaagaggcaagttt |
15965023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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