View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_194 (Length: 228)
Name: NF20665_low_194
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_194 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 46701820 - 46702041
Alignment:
| Q |
6 |
acttcttaacaaaatcattcactatactctttttaatatatagtagtttgctgcattgtgatataataaatggagatattagtgaaaaagaagggtaatt |
105 |
Q |
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| T |
46701820 |
acttcttaacaaaatctttcactatactctttttaatatatagtagtttgctgcattgtgatataataaatggagatattagtgaaaaaaaagggtaaat |
46701919 |
T |
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| Q |
106 |
aatactccattagtaattgaaaatggttaataatatgactctaacgaaatatgccaaacttgacacttaatgttagaaggatagactagaagaactaatt |
205 |
Q |
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| T |
46701920 |
aatactccattagtaa-tgaaaatggttaataatatgactctaacgaaatatgccaaacttgacacttaatgttagaaggatagattagaagaactaatt |
46702018 |
T |
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| Q |
206 |
attctatgatatgttaagatacc |
228 |
Q |
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| T |
46702019 |
attctatgatatgttaagatacc |
46702041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 71 - 228
Target Start/End: Original strand, 46129066 - 46129222
Alignment:
| Q |
71 |
ataaatggagatattagtgaaaaagaagggtaattaatactccattagtaattgaaaatggttaataatatgactctaacgaaatatgccaaacttgaca |
170 |
Q |
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| T |
46129066 |
ataaatggagatattagtgaaaaagaagggcaattaatactccattagtaattgaaaatggttaataatatgactctaacgaaatatgctaaacttgaca |
46129165 |
T |
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| Q |
171 |
ctt-aatgttagaaggatagactagaagaactaattattctatgatatgttaagatacc |
228 |
Q |
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| T |
46129166 |
cttaaatgttagaaggatagagtagaagaactaattattccatg--atgttaagatacc |
46129222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 46123035 - 46123231
Alignment:
| Q |
30 |
tactctttttaatatata--gtagtttgctgcattgtgatataataaatggagatattagtgaaaaagaagggtaattaatactccattagtaattgaaa |
127 |
Q |
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| T |
46123035 |
tactctttttaatatatatagttgttaggtgaattgtgatgtaataaattgacatattggtgaaaaa--agagtaattaatgctccattagtaatttaaa |
46123132 |
T |
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| Q |
128 |
atggttaataatatgactctaacgaaatatgccaaacttgacacttaatgttagaaggatagactagaagaactaattattctatgatatgttaagatac |
227 |
Q |
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| T |
46123133 |
atggcagataatatgacacaaacgaattattctaaacttgaaattaaatg--agatggagggagtaaaagaactaactagtctatgatatgttaagatac |
46123230 |
T |
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