View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_197 (Length: 226)
Name: NF20665_low_197
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_197 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 13487354 - 13487571
Alignment:
| Q |
7 |
gtttcatggtacataaatacaaaagtgattttatacacataaaattaattctaatatgtgatgtctaccgaatatgtttctttagaattgattgtataat |
106 |
Q |
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| T |
13487354 |
gtttcatggtacataaatacaaaagtgattttatacacataaaattaattctaatatgtgatgtctaccgaatatgtttctttagaattgattgtataat |
13487453 |
T |
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| Q |
107 |
ttgaaacttttaactctaaactacattaaagtttactgttcaacccatctactatattaatttaaacataaatcatatcacaatcatctcatttttaact |
206 |
Q |
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| T |
13487454 |
ttgaaacttttaactctaaactacattaaagtttactgttcaacccatctac--tattaatttaaacataaatcatatcacaatcatctcatttttaact |
13487551 |
T |
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| Q |
207 |
aaaattattttaacaaaatc |
226 |
Q |
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| T |
13487552 |
aaaattattttaacaaaatc |
13487571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 13482116 - 13482168
Alignment:
| Q |
174 |
ataaatcatatcacaatcatctcatttttaactaaaattattttaacaaaatc |
226 |
Q |
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| T |
13482116 |
ataaatcacatcacattcaactcattttgaattaaaattatttttacaaaatc |
13482168 |
T |
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