View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_198 (Length: 225)
Name: NF20665_low_198
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_198 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 41234381 - 41234590
Alignment:
| Q |
6 |
aaaaaacaca-gtattatttctgccactctaaccgcgtaacgagagtcgtattcataacaactatatctatctatacgcaccttcctcacatatgctgag |
104 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41234381 |
aaaaaacacaagtattatttctgtcactctaaccgcgtaacgagagtcgtattcataacaactatatctatctatacgcaccttcctcacatatgctgag |
41234480 |
T |
|
| Q |
105 |
aacctatctataatctatataatctataagtgtgtaatgctctcaaattctcattattaatttgtacaatatatactaagcccgttccataaaaaatctc |
204 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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|
| T |
41234481 |
aacctatctataatctatataatctataagtgtgtaatgctctcaaattctcattattaatttgtaca--atatactaagccagttccataaaaaatctc |
41234578 |
T |
|
| Q |
205 |
aactatattctt |
216 |
Q |
| |
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|||||||||||| |
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|
| T |
41234579 |
aactatattctt |
41234590 |
T |
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