View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_2 (Length: 718)
Name: NF20665_low_2
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_2 |
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| [»] scaffold0662 (1 HSPs) |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 660; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 18 - 710
Target Start/End: Complemental strand, 3034604 - 3033912
Alignment:
| Q |
18 |
catattcagtttttgttgaaaataaaatcaagcctttaccagtttcaaccctccctccaccaccacgtcttgcttatttaatctccggctccgccggaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3034604 |
catattcagtttttgttgaaaataaaatcaagcctttaccagtttcaaccctccctccaccaccacgtcttgcttatttaatctccggctccgccggaga |
3034505 |
T |
|
| Q |
118 |
cggtggttctgtcaaaagggtgcttcttgctatgtatcatccacataaccgttatgttgtgcatcttgatcttgaaagttctgcaaaagaacgtgcggat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3034504 |
cggtggttctgtcaaaagggtgcttcttgctatgtatcatccacataaccgttatgttgttcatcttgatcttgaaagttctgcaaaagaacgtgcggat |
3034405 |
T |
|
| Q |
218 |
ctgtttgagtttgtgatgaatcatgagttgtttaagagatttgagaatgttaagatgattactaaggcgaatcttattacttatagaggtcctactatgg |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3034404 |
ctgtttgagtttgtgatgaatcatgagttgtttaagagatttgagaatgttaagatgattactaaggcgaatcttattacttatagaggtcctactatgg |
3034305 |
T |
|
| Q |
318 |
ttgctaatactcttcatgctgctgctattttgttgaaggaatgtggtgattgggattggtttatcaatcttagtgcttctgattatccacttgttactca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3034304 |
ttgctaatactcttcatgctgctgctattttgttgaaggaatgtggtgattgggattggtttatcaatcttagtgcttctgattatccacttgttactca |
3034205 |
T |
|
| Q |
418 |
agatggtttgtgnnnnnnnccttcaactttgtgtttaagttttagtttaatttgttgaaatttagacaggtttaatgttattgatgttggttgtggagat |
517 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3034204 |
agatggtttgtgtttttttccttcaactttgtgtttaagttttagtttaatttgttgaaatttagacagatttaatgttattgatgttggttgtggagat |
3034105 |
T |
|
| Q |
518 |
tagtagaatgatatcttaggttgaggattgaaatttaatattttgtatgttttttatgtttgaggattgaaatttagacagatttatgatgtttggtttt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3034104 |
tagtagaatgatatcttaggttgaggattgaaatttaatattttgtatgttttttatgtttgaggattgaaatttagacagatttatgatgtttggtttt |
3034005 |
T |
|
| Q |
618 |
gaggattgattgctatgtttgtggttgtggtgattagtagaatgaaatcttagaatgaggattgaggtttagaattttgtatgttgatgatgt |
710 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3034004 |
gaggattgattgctatgtttgtggttgtggtgattagtagaatgaaatcttagaatgaggattgaggtttagaattttgtatgttgataatgt |
3033912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 606 - 702
Target Start/End: Complemental strand, 3033915 - 3033820
Alignment:
| Q |
606 |
atgtttggttttgaggattgattgctatgtttgtggttgtggtgattagtagaatgaaatcttagaatgaggattgaggtttagaattttgtatgtt |
702 |
Q |
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||||||||||||||| |||||||||| | ||||||||| |||||||||||||| |||| |||||| ||||||||||| |||| ||||||||||||| |
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| T |
3033915 |
atgtttggttttgagaattgattgctgtttttgtggttttggtgattagtagagtgaagtcttaggatgaggattgaagttt-taattttgtatgtt |
3033820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 505 - 572
Target Start/End: Complemental strand, 3033712 - 3033645
Alignment:
| Q |
505 |
tggttgtggagattagtagaatgatatcttaggttgaggattgaaatttaatattttgtatgtttttt |
572 |
Q |
| |
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||||| |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||||||| |
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| T |
3033712 |
tggttttggagatttgtagaatgaaatcttaggttgaggattgttatttaagattctgtatgtttttt |
3033645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 449 - 572
Target Start/End: Complemental strand, 3033623 - 3033490
Alignment:
| Q |
449 |
tgtttaagttttagtttaatttgttgaaatttagacaggtttaatgttattgatgt----------tggttgtggagattagtagaatgatatcttaggt |
538 |
Q |
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|||||||| ||||||| ||||||||||||| |||||| ||||||||||||||||| ||| ||||| |||||||| | || |||||| | |
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| T |
3033623 |
tgtttaaggtttagttgaatttgttgaaatggagacagatttaatgttattgatgtcgcgaaaatgtggctgtggtgattagtaagaagaaatcttatat |
3033524 |
T |
|
| Q |
539 |
tgaggattgaaatttaatattttgtatgtttttt |
572 |
Q |
| |
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|||||||||||||| || |||||||||||||||| |
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| T |
3033523 |
tgaggattgaaattaaagattttgtatgtttttt |
3033490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 424
Target Start/End: Complemental strand, 9538180 - 9538124
Alignment:
| Q |
368 |
tgggattggtttatcaatcttagtgcttctgattatccacttgttactcaagatggt |
424 |
Q |
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|||||||||||||| ||||||||||||||||||||||| | ||||| ||||||||| |
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| T |
9538180 |
tgggattggtttattaatcttagtgcttctgattatcctttggttacacaagatggt |
9538124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 505 - 575
Target Start/End: Complemental strand, 3033882 - 3033813
Alignment:
| Q |
505 |
tggttgtggagattagtagaatgatatcttaggttgaggattgaaatttaatattttgtatgttttttatg |
575 |
Q |
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||||| ||| |||||||||| ||| ||||||| ||||||||||| ||| | ||||||||||||||||||| |
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| T |
3033882 |
tggttttggtgattagtagagtgaagtcttaggatgaggattgaagtttta-attttgtatgttttttatg |
3033813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 263 - 428
Target Start/End: Original strand, 4637 - 4802
Alignment:
| Q |
263 |
aatgttaagatgattactaaggcgaatcttattacttatagaggtcctactatggttgctaatactcttcatgctgctgctattttgttgaaggaatgtg |
362 |
Q |
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||||||| ||||||| |||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || ||| || |
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| T |
4637 |
aatgttaggatgattgttaaggctaatttggttacttatagaggtcctactatggttactaatactcttcatgctgctgcacttttgtttaaagaagctg |
4736 |
T |
|
| Q |
363 |
gtgattgggattggtttatcaatcttagtgcttctgattatccacttg-ttactcaagatggtttgt |
428 |
Q |
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| ||||||||||||||||| ||||||||||||||||||||||| |||| |||| ||||||||||||| |
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| T |
4737 |
gggattgggattggtttattaatcttagtgcttctgattatcc-cttgcttacacaagatggtttgt |
4802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 6e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 263 - 428
Target Start/End: Original strand, 47025758 - 47025923
Alignment:
| Q |
263 |
aatgttaagatgattactaaggcgaatcttattacttatagaggtcctactatggttgctaatactcttcatgctgctgctattttgttgaaggaatgtg |
362 |
Q |
| |
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||||||| ||||||| |||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| || ||| || |
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| T |
47025758 |
aatgttaggatgattgttaaggctaatttggttacttatagaggtcctactatggttactaatactcttcatgctgctgcacttttgtttaaagaagctg |
47025857 |
T |
|
| Q |
363 |
gtgattgggattggtttatcaatcttagtgcttctgattatccacttg-ttactcaagatggtttgt |
428 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||| |||| |||| ||||||||||||| |
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| T |
47025858 |
gggattgggattggtttattaatcttagtgcttctgattatcc-cttgcttacacaagatggtttgt |
47025923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 402
Target Start/End: Original strand, 7421918 - 7421959
Alignment:
| Q |
361 |
tggtgattgggattggtttatcaatcttagtgcttctgatta |
402 |
Q |
| |
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||||||||||||||||||| | |||||||||||||||||||| |
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| T |
7421918 |
tggtgattgggattggtttgttaatcttagtgcttctgatta |
7421959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 575
Target Start/End: Complemental strand, 29710907 - 29710870
Alignment:
| Q |
538 |
ttgaggattgaaatttaatattttgtatgttttttatg |
575 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| |
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| T |
29710907 |
ttgagcattgaaatttaagattttgtatgttttttatg |
29710870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 314 - 425
Target Start/End: Original strand, 33230899 - 33231010
Alignment:
| Q |
314 |
atggttgctaatactcttcatgctgctgctattttgttgaaggaatgtggtgattgggattggtttatcaatcttagtgcttctgattatccacttgtta |
413 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | ||| | || ||||||||||||||||| ||||||||||||||||||||||| ||||| | |
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| T |
33230899 |
atggttgctaatactcttcatgcttgtgctattttgctcaagagaagtaaagattgggattggtttattaatcttagtgcttctgattatcctcttgtca |
33230998 |
T |
|
| Q |
414 |
ctcaagatggtt |
425 |
Q |
| |
|
|||||||||||| |
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|
| T |
33230999 |
ctcaagatggtt |
33231010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 366 - 424
Target Start/End: Original strand, 33717773 - 33717831
Alignment:
| Q |
366 |
attgggattggtttatcaatcttagtgcttctgattatccacttgttactcaagatggt |
424 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| | ||||| ||||||||| |
|
|
| T |
33717773 |
attgggattggtttattaatcttagtgcttctgattatccattggttacacaagatggt |
33717831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 16985 - 17041
Alignment:
| Q |
189 |
ttgaaagttctgcaaaagaacgtgcggatctgtttgagtttgtgatgaatcatgagt |
245 |
Q |
| |
|
|||||| ||||||||||||| |||| ||||||||||||||||| ||||||||||||| |
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|
| T |
16985 |
ttgaaacttctgcaaaagaatgtgcagatctgtttgagtttgtaatgaatcatgagt |
17041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 575
Target Start/End: Complemental strand, 6579260 - 6579223
Alignment:
| Q |
538 |
ttgaggattgaaatttaatattttgtatgttttttatg |
575 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||| |
|
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| T |
6579260 |
ttgagcattgaaatttaagattttgtatgttttttatg |
6579223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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