View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_201 (Length: 222)

Name: NF20665_low_201
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_201
NF20665_low_201
[»] chr2 (40 HSPs)
chr2 (53-222)||(44426164-44426333)
chr2 (53-222)||(19974689-19974859)
chr2 (53-189)||(2940701-2940837)
chr2 (53-222)||(31076672-31076842)
chr2 (53-189)||(34788824-34788960)
chr2 (53-222)||(36067577-36067746)
chr2 (53-189)||(22962561-22962698)
chr2 (53-189)||(32525213-32525350)
chr2 (53-189)||(2940060-2940197)
chr2 (53-189)||(31076120-31076257)
chr2 (98-189)||(42158413-42158504)
chr2 (107-222)||(2940608-2940723)
chr2 (53-189)||(32525794-32525930)
chr2 (53-189)||(36067059-36067196)
chr2 (53-189)||(44425626-44425762)
chr2 (53-189)||(38816017-38816151)
chr2 (53-220)||(40831279-40831443)
chr2 (61-184)||(39318136-39318259)
chr2 (53-189)||(34789231-34789366)
chr2 (53-189)||(19057962-19058098)
chr2 (53-189)||(19975271-19975407)
chr2 (54-189)||(42158872-42159007)
chr2 (53-142)||(22961773-22961863)
chr2 (79-189)||(39317589-39317699)
chr2 (59-189)||(11823557-11823683)
chr2 (107-189)||(32130382-32130462)
chr2 (76-132)||(38815489-38815545)
chr2 (107-189)||(1858496-1858577)
chr2 (123-189)||(39318191-39318256)
chr2 (64-132)||(1858954-1859022)
chr2 (61-189)||(1858957-1859083)
chr2 (77-189)||(42952398-42952509)
chr2 (64-131)||(1858512-1858579)
chr2 (123-189)||(22961784-22961850)
chr2 (167-222)||(38815549-38815604)
chr2 (97-142)||(38815539-38815584)
chr2 (64-132)||(44425696-44425765)
chr2 (64-131)||(38816015-38816082)
chr2 (64-131)||(39317633-39317701)
chr2 (137-189)||(44272948-44273000)
[»] chr3 (15 HSPs)
chr3 (53-222)||(33222011-33222181)
chr3 (53-222)||(38853055-38853222)
chr3 (53-222)||(38929015-38929185)
chr3 (61-189)||(23615775-23615903)
chr3 (53-189)||(38929512-38929648)
chr3 (53-189)||(38852516-38852652)
chr3 (53-189)||(13935172-13935309)
chr3 (107-189)||(13935762-13935844)
chr3 (53-189)||(34020250-34020386)
chr3 (53-219)||(50681199-50681363)
chr3 (76-222)||(29252755-29252899)
chr3 (53-189)||(33222585-33222723)
chr3 (72-189)||(50681738-50681856)
chr3 (64-132)||(29252785-29252854)
chr3 (64-132)||(13935243-13935312)
[»] chr8 (31 HSPs)
chr8 (53-222)||(36180950-36181116)
chr8 (53-222)||(38781770-38781938)
chr8 (59-222)||(764391-764554)
chr8 (53-189)||(37707332-37707468)
chr8 (53-189)||(38781234-38781371)
chr8 (53-189)||(28967794-28967931)
chr8 (53-189)||(28936955-28937092)
chr8 (53-189)||(28990425-28990563)
chr8 (59-219)||(764930-765090)
chr8 (59-189)||(22201769-22201899)
chr8 (101-189)||(9513672-9513760)
chr8 (53-132)||(28937573-28937653)
chr8 (53-132)||(28991040-28991120)
chr8 (76-189)||(9513162-9513275)
chr8 (59-132)||(28967233-28967305)
chr8 (53-132)||(14036666-14036746)
chr8 (123-189)||(28937576-28937642)
chr8 (123-189)||(28991043-28991109)
chr8 (123-189)||(14036677-14036743)
chr8 (53-129)||(22202381-22202454)
chr8 (123-189)||(28967238-28967302)
chr8 (167-222)||(28937514-28937569)
chr8 (167-222)||(28967309-28967364)
chr8 (167-222)||(28990981-28991036)
chr8 (64-132)||(22201834-22201902)
chr8 (64-132)||(28937026-28937095)
chr8 (97-142)||(28937534-28937579)
chr8 (97-142)||(28967299-28967344)
chr8 (97-142)||(28991001-28991046)
chr8 (61-189)||(32825053-32825182)
chr8 (152-188)||(17609338-17609373)
[»] chr5 (29 HSPs)
chr5 (59-222)||(13360289-13360452)
chr5 (53-222)||(42501673-42501842)
chr5 (53-189)||(42865978-42866112)
chr5 (53-222)||(39599897-39600069)
chr5 (53-222)||(35894665-35894832)
chr5 (53-189)||(43109428-43109565)
chr5 (53-189)||(42257266-42257402)
chr5 (53-219)||(13359772-13359938)
chr5 (53-189)||(35894117-35894254)
chr5 (53-189)||(28864154-28864290)
chr5 (53-189)||(39599346-39599482)
chr5 (53-189)||(42501125-42501262)
chr5 (53-142)||(42258104-42258194)
chr5 (53-142)||(43110263-43110353)
chr5 (54-189)||(42866549-42866684)
chr5 (53-189)||(1628840-1628975)
chr5 (53-189)||(12216132-12216266)
chr5 (61-222)||(57136-57294)
chr5 (61-189)||(10433462-10433589)
chr5 (97-189)||(1629409-1629501)
chr5 (53-189)||(10432961-10433095)
chr5 (59-132)||(28863286-28863358)
chr5 (75-189)||(24402407-24402519)
chr5 (137-183)||(12215662-12215708)
chr5 (123-189)||(43110276-43110342)
chr5 (64-132)||(1628910-1628978)
chr5 (138-189)||(57704-57755)
chr5 (64-132)||(35894188-35894257)
chr5 (64-132)||(42501196-42501265)
[»] chr4 (23 HSPs)
chr4 (59-222)||(34267747-34267909)
chr4 (53-189)||(45753299-45753435)
chr4 (53-189)||(34268293-34268429)
chr4 (53-189)||(51928335-51928470)
chr4 (53-189)||(50772762-50772897)
chr4 (53-189)||(38739231-38739368)
chr4 (122-189)||(40919806-40919872)
chr4 (53-189)||(41551202-41551339)
chr4 (122-222)||(38739779-38739879)
chr4 (53-113)||(38739859-38739920)
chr4 (53-132)||(45752778-45752858)
chr4 (153-222)||(40834215-40834283)
chr4 (53-132)||(41550671-41550755)
chr4 (123-189)||(45752789-45752855)
chr4 (64-132)||(38739302-38739371)
chr4 (64-132)||(50772831-50772900)
chr4 (125-189)||(40834732-40834795)
chr4 (137-222)||(41550700-41550785)
chr4 (61-189)||(35576723-35576852)
chr4 (167-222)||(45752862-45752917)
chr4 (97-142)||(45752852-45752897)
chr4 (53-99)||(17603685-17603728)
chr4 (153-189)||(32554752-32554788)
[»] chr7 (21 HSPs)
chr7 (53-219)||(1963462-1963628)
chr7 (53-222)||(47378508-47378677)
chr7 (53-222)||(8294428-8294596)
chr7 (53-222)||(42941992-42942160)
chr7 (59-221)||(2093924-2094085)
chr7 (71-189)||(31902549-31902666)
chr7 (53-189)||(8295588-8295723)
chr7 (53-189)||(28882318-28882455)
chr7 (76-188)||(37399388-37399500)
chr7 (53-189)||(42941443-42941580)
chr7 (71-189)||(1964040-1964159)
chr7 (53-132)||(28883175-28883255)
chr7 (54-189)||(31902038-31902171)
chr7 (79-189)||(2094482-2094592)
chr7 (97-189)||(47379082-47379174)
chr7 (137-189)||(37399447-37399498)
chr7 (76-174)||(42791810-42791907)
chr7 (123-189)||(28883178-28883244)
chr7 (64-132)||(2094479-2094548)
chr7 (64-128)||(37399388-37399453)
chr7 (64-132)||(42941514-42941583)
[»] chr1 (23 HSPs)
chr1 (53-222)||(5564193-5564362)
chr1 (61-219)||(6505173-6505331)
chr1 (53-222)||(6811037-6811206)
chr1 (97-222)||(52214463-52214588)
chr1 (53-189)||(6810499-6810634)
chr1 (53-189)||(37596673-37596808)
chr1 (71-189)||(26617454-26617573)
chr1 (53-189)||(6504666-6504802)
chr1 (61-189)||(51247127-51247254)
chr1 (53-189)||(52213914-52214049)
chr1 (76-189)||(37596951-37597064)
chr1 (97-219)||(5564740-5564862)
chr1 (76-189)||(30456076-30456188)
chr1 (53-132)||(26616908-26616984)
chr1 (77-132)||(51247124-51247180)
chr1 (64-113)||(7708682-7708732)
chr1 (64-132)||(5564767-5564836)
chr1 (53-173)||(7708682-7708800)
chr1 (64-132)||(37596742-37596811)
chr1 (61-132)||(14922051-14922123)
chr1 (61-132)||(14922490-14922562)
chr1 (61-132)||(32473807-32473879)
chr1 (64-132)||(37596948-37597016)
[»] chr6 (21 HSPs)
chr6 (53-222)||(29361604-29361773)
chr6 (53-222)||(17335677-17335845)
chr6 (53-189)||(31066352-31066486)
chr6 (53-189)||(17192383-17192520)
chr6 (53-189)||(17335132-17335268)
chr6 (53-189)||(31065797-31065931)
chr6 (101-222)||(24814338-24814460)
chr6 (59-189)||(32754853-32754982)
chr6 (53-176)||(15272872-15272997)
chr6 (53-132)||(6181131-6181211)
chr6 (97-189)||(6180606-6180698)
chr6 (59-132)||(17191853-17191926)
chr6 (59-99)||(15273781-15273821)
chr6 (137-189)||(15272898-15272950)
chr6 (97-189)||(29362161-29362252)
chr6 (76-132)||(35051795-35051851)
chr6 (138-189)||(24814432-24814483)
chr6 (123-189)||(6181134-6181200)
chr6 (64-132)||(6180632-6180701)
chr6 (138-178)||(18051609-18051649)
chr6 (64-132)||(32754850-32754918)
[»] scaffold0341 (2 HSPs)
scaffold0341 (71-219)||(6851-6999)
scaffold0341 (53-189)||(6349-6485)
[»] scaffold0025 (1 HSPs)
scaffold0025 (63-222)||(22277-22435)
[»] scaffold0045 (1 HSPs)
scaffold0045 (61-189)||(75242-75371)
[»] scaffold0508 (2 HSPs)
scaffold0508 (71-189)||(364-482)
scaffold0508 (137-214)||(286-361)


Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 44426333 - 44426164
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| || |||||||||||||||    
T  44426333 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccccctattttaaaactcggaattttaccccccctatttttattgattc 44426234  T
Q  152 tggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||    
T  44426233 tggattttgcctcccctattttaaaactcggaatttta-cccccctattttatgtttttcaggattttgcc 44426164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 19974689 - 19974859
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||  | |||||||||||||||    
T  19974689 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccccctattttaaaactcggaattttacccctcctatttttattgattc 19974788  T
Q  152 tggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    |||||||||||| |||||||||||||||||||||||||       |||||||| |||||||||||||||||    
T  19974789 tggattttgccttccctattttaaaactcggaattttaccccccctattttatgtttttcaggattttgcc 19974859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 2940837 - 2940701
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||   ||| ||||||||| ||| |||||||||||| |  ||||||||||| ||||    
T  2940837 ggcttaaatgcaattttacccctcctattttgattgaatctgaattttatcccactattttaaaactcggaattttaccccctctatttttattggttct 2940738  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||||||||||||||||||||||||||||||    
T  2940737 ggattttgcctcccctattttaaaactcggaatttta 2940701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 31076842 - 31076672
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| | | |||||||||||| |  |||||||||||||||    
T  31076842 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccccctattttaaaattcggaattttaccccctctatttttattgattc 31076743  T
Q  152 tggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    ||||||||||||||||||||||| |||| | |||||||       |||||||| |||||||||||||||||    
T  31076742 tggattttgcctcccctattttagaacttgaaattttaccccccctattttatgtttttcaggattttgcc 31076672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 34788824 - 34788960
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||| ||| |||||||||||| |  ||||||||||||||||    
T  34788824 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccccctattttaaaactcggaattttaccccctctatttttattgattct 34788923  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||||||||||||||| |||| |||||||||    
T  34788924 ggattttgcctcccctattttagaacttggaatttta 34788960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 36067746 - 36067577
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctc-tattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||| |||||||||||||||  || ||| |||||||| ||| |||||||||||| |  |||||||||||||||    
T  36067746 ggcttaaatgcaattttaccccccctattttaattgaatctgaattttacctctcctattttaaaactcggaattttaccccctctatttttattgattc 36067647  T
Q  152 tggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    ||||||||||||||||||||||| |||| |||||||||       |||||||| |||||||||||||||||    
T  36067646 tggattttgcctcccctattttagaacttggaatttta-cccccctattttatgtttttcaggattttgcc 36067577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 22962698 - 22962561
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| |  |||||| ||||| ||    
T  22962698 ggcttaaatgcaattttnccccccctattttgattgaatctgaattttaccccccctattttaaaacttggaattttaccccctctattttgattgaatc 22962599  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| ||| ||||||||||||||||||||||    
T  22962598 gggattttgccccccttattttaaaactcggaatttta 22962561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 32525213 - 32525350
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||| |||  ||||||||||||||||||||||| |||||||||||||||| | | ||||||||||||    ||||||||||| |||    
T  32525213 ggcttaaatgcaattttatcccctctattttgattgaatctgaattttaccccctctattttaaaattcggaattttaccccttctatttttattggttc 32525312  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||||||||||||||||||||| |||||||||    
T  32525313 tggattttgcctcccctattttaaaacttggaatttta 32525350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 2940060 - 2940197
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||| | | |||||||||||| |  || ||| ||||| ||    
T  2940060 ggcttaaatgcaattttaccccctctattttgattgaatctgaattttaccccctctattttaaaattcggaattttaccccctctaatttgattgaatc 2940159  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||||||| ||||||||||||||||||||||    
T  2940160 gggattttgcctcccttattttaaaactcggaatttta 2940197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 31076120 - 31076257
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctc-tattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||  |||||| |||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  31076120 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccctcctattttaaaactcggaattttaccccctctattttgattgaatc 31076219  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| ||| ||||||||||||||||||||||    
T  31076220 gggattttgccccccttattttaaaactcggaatttta 31076257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 42158413 - 42158504
Alignment:
Q  98 ttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||| ||||||||| ||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42158413 ttaccccccctattttaaaactcggaattttaccccccctatttttattgattctggattttgcctcccctattttaaaactcggaatttta 42158504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 2940723 - 2940608
Alignment:
Q  107 ctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttannnnnnntattttatat 206  Q
    ||||||||| ||| |||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||| |    
T  2940723 ctattttaaaactcggaattttaccccctctatttttattgattctggattttgcctcccctattttaaaactcggaattttaccccccctattttatgt 2940624  T
Q  207 ttttcaggattttgcc 222  Q
    ||||||||||||||||    
T  2940623 ttttcaggattttgcc 2940608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 32525930 - 32525794
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||| |||||||||||||||| |  |||||| ||||| ||    
T  32525930 ggcttaaatgcaattttacccctc-tattttgattgaatctgaattttatcccccctattttaaaacttggaattttaccccctctattttgattgaatc 32525832  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     ||||||||||  || ||||||||||||||||||||||    
T  32525831 gggattttgccctccatattttaaaactcggaatttta 32525794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 36067059 - 36067196
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||| ||||||||||  | |||||||||||||||||||||| ||||| |||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  36067059 ggcttaaatgtaattttaccctccatattttgattgaatctgaattttaccccttctattttaaaactcggaattttaccccctctattttgattgaatc 36067158  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| ||| ||||||||||||||||||||||    
T  36067159 gggattttgccccccttattttaaaactcggaatttta 36067196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 44425626 - 44425762
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||  |||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  44425626 ggcttaaatgcaattttaccc-tcctattttgattgaatctgaattttaccccccttattttaaaactcggaattttaccccctctattttgattgaatc 44425724  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     | |||||||| ||| ||||||||||||||||||||||    
T  44425725 ggaattttgccccccttattttaaaactcggaatttta 44425762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 38816151 - 38816017
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||| ||| |||||||||||| |  |||||| ||||| ||     
T  38816151 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttacccccctattttaaaactcggaattttaccccctctattttgattgaatcg 38816053  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    ||||||| || ||| ||||||||||||||||||||||    
T  38816052 ggattttacc-cccttattttaaaactcggaatttta 38816017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 53 - 220
Target Start/End: Complemental strand, 40831443 - 40831279
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||| |||||||| ||||||||||||| ||| |||| |||||||||| |||||||| |||| ||||||||||  || |||||| ||||||||    
T  40831443 ggcttaaatgcagttttaccc-tcctattttgattaaatttgaattttaccccct-tattttaaaacttagaattttacctcccctattttgattgattc 40831346  T
Q  152 tggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttg 220  Q
    || |||||||  ||||||||||||||||||||||||||       ||||||| |||| |||||||||||    
T  40831345 tgaattttgc--cccctattttaaaactcggaattttaccctctctattttacatttatcaggattttg 40831279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 39318259 - 39318136
Alignment:
Q  61 tgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttg 160  Q
    |||||||||| ||| | |||||||||||||| || ||||  |||| ||||||||| ||| |||||||||||| | ||||||| || |||||| |||||||    
T  39318259 tgcaattttatcccccttattttgattgaatttggattttacccccctattttaaaactcggaattttaccccctttattttgatcgattctagattttg 39318160  T
Q  161 cctcccctattttaaaactcggaa 184  Q
    |||||||||||| |||||||||||    
T  39318159 cctcccctatttaaaaactcggaa 39318136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 34789366 - 34789231
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctc-tattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||| ||  | ||||||||||||||||||||||  |||||| |||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  34789366 ggcttaaatgcaattttatcctccatattttgattgaatctgaattttacccctcctattttaaaactcggaattttaccctc--tattttgattgaatc 34789269  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| ||| ||||||||||||||||||||||    
T  34789268 gggattttgccccccttattttaaaactcggaatttta 34789231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 19057962 - 19058098
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||| ||||||| | |||||||||||||||| || |||| || ||||||||||||| |||  |||||||| || ||| ||||| ||||||||    
T  19057962 ggcttaaatgcagttttacctcccctattttgattgaatttggattttactccctctattttaaaactaagaattttatccccct-attttgattgattc 19058060  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
    || |||||||| ||| ||||||||||||||||||||||    
T  19058061 tgaattttgccccccttattttaaaactcggaatttta 19058098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 19975407 - 19975271
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||  || | ||||||||| ||| |||||||||||  |  |||||| ||||| ||     
T  19975407 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacctccctattttaaaactcggaattttacctcctctattttgattgaatcg 19975308  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    | |||||||| ||  |||||||||||||| |||||||    
T  19975307 gaattttgccccctttattttaaaactcgaaatttta 19975271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 42159007 - 42158872
Alignment:
Q  54 gcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctg 153  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||  |||| |||||| || ||| |||||||||||  |  |||||| ||||| || |    
T  42159007 gcttaaatgcaattttaccccccctattttgattgaatctgaattttacccccctatttcaaaactcggaattttacctcctctattttgattgaatcgg 42158908  T
Q  154 gattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||| ||  |||||||||||||| |||||||    
T  42158907 aattttgccccctttattttaaaactcgaaatttta 42158872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 53 - 142
Target Start/End: Original strand, 22961773 - 22961863
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttt 142  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |||||||||    
T  22961773 ggcttaaatgcaattttacccccccgattttgattgaatctgaatttcaccccccctattttaaaactcggaattttaccccccttatttt 22961863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 39317589 - 39317699
Alignment:
Q  79 attttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaac 178  Q
    ||||||||||||| |||||||  |||| ||||||||| |||||||||||||||| |  |||||| |||||||||||||||| || ||| |||||||||||    
T  39317589 attttgattgaatttgaattttgcccccctattttaaaacttggaattttaccccctctattttgattgattctggattttaccccccttattttaaaac 39317688  T
Q  179 tcggaatttta 189  Q
    | | |||||||    
T  39317689 ttgtaatttta 39317699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 11823557 - 11823683
Alignment:
Q  59 aatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattt 158  Q
    |||||| ||||||| |||||||||||||||||| |  |||||||||  ||||||||||||| ||||||||| || |   ||||| ||||| | |||||||    
T  11823557 aatgcagttttacctctcctattttgattgaat-tagatttacccc--ctattttaatactcggaattttatcccctcaattttgattgaatttggattt 11823653  T
Q  159 tgcctcccctattttaaaactcggaatttta 189  Q
    |||| ||| ||||||||||||||||||||||    
T  11823654 tgcc-cccttattttaaaactcggaatttta 11823683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 32130382 - 32130462
Alignment:
Q  107 ctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    ||||||||| ||| |||||||||||| |  |||||| ||||||||| |||||||||||||||||||||||||| |||||||||    
T  32130382 ctattttaaaactcggaattttaccccc--tattttgattgattctagattttgcctcccctattttaaaacttggaatttta 32130462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 38815489 - 38815545
Alignment:
Q  76 cctattttgattgaatctgaatttaccccctctattttaatacttggaattttaccc 132  Q
    |||||||||||||||| |||||||  |||| ||||||||| ||||||||||||||||    
T  38815489 cctattttgattgaatttgaattttgcccccctattttaaaacttggaattttaccc 38815545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 1858496 - 1858577
Alignment:
Q  107 ctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    ||||||||| ||| |||||||||||| |  |||||| ||||| | ||||||||||| ||  ||||||||||||||||||||||    
T  1858496 ctattttaaaactcggaattttaccccctctattttgattgaatttggattttgcc-cctatattttaaaactcggaatttta 1858577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 39318256 - 39318191
Alignment:
Q  123 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    ||||||| || ||||||||| ||||| | |||||||| || ||||||||||||||||||||||||||    
T  39318256 aattttatcccccttattttgattgaatttggattttacc-cccctattttaaaactcggaatttta 39318191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 1859022 - 1858954
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttaccc 132  Q
    ||||||||| || ||||||||||||| |||| ||||  |||| ||||||||| |||| |||||||||||    
T  1859022 aattttacctcttctattttgattgattctggattttacccccctattttaaaactttgaattttaccc 1858954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 1859083 - 1858957
Alignment:
Q  61 tgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttg 160  Q
    |||| |||||||||  ||||||||||||||| |  ||||   ||| ||||||||| ||| |||||||||||     |||||| ||||||||||||||||     
T  1859083 tgcagttttacccccactattttgattgaatttagattttgtccc-ctattttaaaactcggaattttacctcttctattttgattgattctggatttta 1858985  T
Q  161 cctcccctattttaaaactcggaatttta 189  Q
    || ||||||||||||||||  ||||||||    
T  1858984 cc-cccctattttaaaactttgaatttta 1858957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 42952398 - 42952509
Alignment:
Q  77 ctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaa 176  Q
    ||||||||||||||| || ||||  |||  |||| |||| ||| ||||||||| || ||| ||||| ||||||||| ||||||| ||  |  ||||||||    
T  42952398 ctattttgattgaatttggattttgccctcctatcttaaaactcggaattttatccccct-attttgattgattctagattttgactatcgcattttaaa 42952496  T
Q  177 actcggaatttta 189  Q
    |||||||||||||    
T  42952497 actcggaatttta 42952509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 1858512 - 1858579
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacc 131  Q
    |||||||||||  ||||||||||||||| || ||||  ||||| |||||||| ||| |||||||||||    
T  1858512 aattttaccccctctattttgattgaatttggattttgcccctatattttaaaactcggaattttacc 1858579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 22961784 - 22961850
Alignment:
Q  123 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||| ||  ||||| ||||| |||| ||||  || ||||||||||||||||||||||||||    
T  22961784 aattttacccccccgattttgattgaatctgaatttcaccccccctattttaaaactcggaatttta 22961850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 38815549 - 38815604
Alignment:
Q  167 ctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    |||||||||||||||||||||||       |||||||| |||||||||||||||||    
T  38815549 ctattttaaaactcggaattttaccccccctattttatgtttttcaggattttgcc 38815604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 38815539 - 38815584
Alignment:
Q  97 tttaccccctctattttaatacttggaattttacccgccttatttt 142  Q
    ||||||||||||||||||| ||| |||||||||||| || ||||||    
T  38815539 tttaccccctctattttaaaactcggaattttaccccccctatttt 38815584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 44425696 - 44425765
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaatttaccccctct-attttaatacttggaattttaccc 132  Q
    |||||||||||  |||||||||||||||| ||||||  |||| || ||||||| ||| ||||||||||||    
T  44425696 aattttaccccctctattttgattgaatcggaattttgccccccttattttaaaactcggaattttaccc 44425765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 38816082 - 38816015
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacc 131  Q
    |||||||||||  |||||||||||||||| | |||| ||||||| |||||||| ||| |||||||||||    
T  38816082 aattttaccccctctattttgattgaatcgggattttaccccct-tattttaaaactcggaattttacc 38816015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 39317633 - 39317701
Alignment:
Q  64 aattttacccctcctattttgattgaatct-gaatttaccccctctattttaatacttggaattttacc 131  Q
    |||||||||||  ||||||||||||| ||| || |||||||||  |||||||| ||||| |||||||||    
T  39317633 aattttaccccctctattttgattgattctggattttaccccccttattttaaaacttgtaattttacc 39317701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 44272948 - 44273000
Alignment:
Q  137 tatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||| | ||| |||| ||||| |||||| ||||||||||||||||||||||    
T  44272948 tattttgactgaatctgaattttacctcccttattttaaaactcggaatttta 44273000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 33222011 - 33222181
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctc-tattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||  |||||| |||||||| ||| |||||||||||| | ||||||||||||||||    
T  33222011 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccctcctattttaaaactcggaattttaccccctttatttttattgattc 33222110  T
Q  152 tggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||| ||||    
T  33222111 tggattttgcctcccctattttaaaactcggaattttaccccccttattttatgtttttcaggattctgcc 33222181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 38853222 - 38853055
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||| ||| |||||||||||| || ||||||||||||||||    
T  38853222 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttacccc-ctattttaaaactcggaattttaccccccctatttttattgattct 38853125  T
Q  153 ggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    ||||||||||| |||||||||||||||||||||||||       |||||||| |||||||||||||||||    
T  38853124 ggattttgccttccctattttaaaactcggaattttaccccccctattttatgtttttcaggattttgcc 38853055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 38929015 - 38929185
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||| |||||  ||||||||||||||| ||||||| |||||| ||||||||| |||  ||||||||||| |  ||||||||||||||     
T  38929015 ggcttaaatgcaatttcaccccctctattttgattgaatatgaattttaccccccctattttaaaactcagaattttaccccctctatttttattgatta 38929114  T
Q  152 tggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    |||||||||||||||||||||||||| |||||||||||       |||||||| |||||||||||||||||    
T  38929115 tggattttgcctcccctattttaaaattcggaattttaccccccctattttatgtttttcaggattttgcc 38929185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 23615775 - 23615903
Alignment:
Q  61 tgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttg 160  Q
    |||||||||||||| |||||||||||||||| || ||||  |||| ||||||||| |||||||||||||||| || ||| || ||||||| ||||||||     
T  23615775 tgcaattttaccccccctattttgattgaatttggatttcgcccccctattttaaaacttggaattttaccccccctatattgattgattttggattttt 23615874  T
Q  161 cctcccctattttaaaactcggaatttta 189  Q
    ||||||||| |||||| ||||||||||||    
T  23615875 cctcccctagtttaaatctcggaatttta 23615903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 38929648 - 38929512
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||  ||||| |||||||| | | |||||||||||| |  |||||||||||| ||     
T  38929648 ggcttaaatgcaattttaccccccttattttgattgaatctgaattttacccctttattttaaaattcggaattttaccccctctatttttattgaatcg 38929549  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||| ||| ||| ||||||||||||||||||||||    
T  38929548 ggatttcgccccccttattttaaaactcggaatttta 38929512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 38852516 - 38852652
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||| ||| |||||||||||| |  |||||| ||||| ||     
T  38852516 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccccctattttaaaactcggaattttaccccctctattttgattgaatcg 38852615  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    | |||||||| ||  |||||||||||||| |||||||    
T  38852616 gaattttgccccctttattttaaaactcgaaatttta 38852652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 13935172 - 13935309
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||| ||||||||||||| ||||||||||| |||||| |  ||||||||| | ||||||||||||||    |||||| ||||| ||    
T  13935172 ggcttaaatgcaattttatccctcctattttggttgaatctgaattttaccactcctattttaaaatttggaattttaccccttctattttgattgaatc 13935271  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||| | | | ||||||||||||||||||||||    
T  13935272 aggattttgtccctcttattttaaaactcggaatttta 13935309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 13935844 - 13935762
Alignment:
Q  107 ctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    ||||||||| | || |||||||| || |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13935844 ctattttaaaatttagaattttatcccctctatttttattgattctggattttgcctcctctattttaaaactcggaatttta 13935762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 34020386 - 34020250
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccc-cctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||| ||||| ||| |||||||||||||||| || ||||  || |||||||||||| ||| | |||||||||  |  |||||| ||||| ||    
T  34020386 ggcttaaatgcagttttatccc-cctattttgattgaatttggattttgcctcctctattttaaaactcgaaattttacctcctctattttgattgaatc 34020288  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
    ||||||||||| |||  |||||||||||||||||||||    
T  34020287 tggattttgcccccctaattttaaaactcggaatttta 34020250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 50681199 - 50681363
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||| ||||| |||||||||||||||||||| || ||||  |||| ||||||||| ||| ||||| ||| || |  |||||| ||||| |||    
T  50681199 ggcttaaatgcagttttatccctcctattttgattgaatttggattttacccc-ctattttaaaactcggaatattatcccctctattttgattgaatct 50681297  T
Q  153 ggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggatttt 219  Q
    ||||||| || |||||  |||||||||||||||||||       |||||||  ||||||||||||||    
T  50681298 ggatttttcc-ccccttatttaaaactcggaattttaccccctatattttacgtttttcaggatttt 50681363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 222
Target Start/End: Complemental strand, 29252899 - 29252755
Alignment:
Q  76 cctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaa 175  Q
    ||||| |||||||||| || |||| ||||||  ||||||| ||| ||||||||||||     ||||| ||||| |||| |||||||| ||  ||||||||    
T  29252899 cctatattgattgaatttggattttccccct--attttaaaactcggaattttaccccgtcaattttgattgaatctgaattttgccccctttattttaa 29252802  T
Q  176 aactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    ||||||||||||||       | ||||||||||||||||||||||||    
T  29252801 aactcggaattttaccccatatgttttatatttttcaggattttgcc 29252755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 33222723 - 33222585
Alignment:
Q  53 ggcttgaatgcaattttacccctcc-tattttgattgaatctgaatttaccccctc-tattttaatacttggaattttacccgccttatttttattgatt 150  Q
    ||||| |||||||||||||||| || ||||||| || |||||||||||  |||||| |||||||| ||| |||||||| ||| |   ||||| ||||| |    
T  33222723 ggcttaaatgcaattttacccccccctattttgtttaaatctgaattttacccctcctattttaaaactcggaatttttccccctcgattttgattgaat 33222624  T
Q  151 ctggattttgcctcccctattttaaaactcggaatttta 189  Q
    | | |||||||| ||| ||||||||||||||||| ||||    
T  33222623 cggaattttgccccccttattttaaaactcggaaattta 33222585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 50681856 - 50681738
Alignment:
Q  72 ccctcctattttgattgaatctgaatttaccccctct-attttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctat 170  Q
    |||||||||||||||||||| || ||||  |  |||| ||||||| | ||||||||||||||  | |||||| ||||||| ||||||||| || ||||||    
T  50681856 ccctcctattttgattgaatttggattttgcttctcttattttaaaatttggaattttacccttcgtattttgattgattttggattttgtcttccctat 50681757  T
Q  171 tttaaaactcggaatttta 189  Q
    ||||||||| | |||||||    
T  50681756 tttaaaacttgaaatttta 50681738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 29252854 - 29252785
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttaccc 132  Q
    |||||||||||  | |||||||||||||||||| ||| |||||| |||||||| ||| ||||||||||||    
T  29252854 aattttaccccgtcaattttgattgaatctgaattttgccccctttattttaaaactcggaattttaccc 29252785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 13935243 - 13935312
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaatttaccccctct-attttaatacttggaattttaccc 132  Q
    |||||||||||| |||||||||||||||| | ||||   |||||| ||||||| ||| ||||||||||||    
T  13935243 aattttaccccttctattttgattgaatcaggattttgtccctcttattttaaaactcggaattttaccc 13935312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 36180950 - 36181116
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||| ||| |||||||||||| || |||||||||||||| |    
T  36180950 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttacccccctattttaaaactcggaattttaccccccctatttttattgattat 36181048  T
Q  153 ggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    |||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||    
T  36181049 ggattttgcctcccctattttaaaactcggaatttta--ccccctattttatgtttttcaggattttgcc 36181116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 38781938 - 38781770
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| ||||||||||||||  | ||||||||||||||||||||||| ||||||  |||||||| ||| |||||||||||| |  |||||||||||||||    
T  38781938 ggcttaaatgcaattttacc--ttctattttgattgaatctgaattttaccccccttattttaaaactcggaattttaccccctctatttttattgattc 38781841  T
Q  152 tggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    |||||||||||||||||||||||||||||| |||||||       |||||||| |||||||||||||||||    
T  38781840 tggattttgcctcccctattttaaaactcgaaattttaccccccctattttatgtttttcaggattttgcc 38781770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 764391 - 764554
Alignment:
Q  59 aatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttacccgccttatttttattgattctggatt 157  Q
    |||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| | | |||||||||||| |  |||||||||||||||||||||    
T  764391 aatgcaattttaccccccctattttgattgaatctgaattttatcccctctattttaaaattcggaattttaccccctctatttttattgattctggatt 764490  T
Q  158 ttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    ||  ||| ||||||||||||||||||||||||       |||||||| |||||||||||||||||    
T  764491 tt-tctctcctattttaaaactcggaattttaccccctctattttatgtttttcaggattttgcc 764554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 37707332 - 37707468
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||| | ||||||||| ||| |||||||||||| | ||||||| ||||| ||    
T  37707332 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttaccctccctattttaaaactcggaattttaccccctttattttgattgaatc 37707430  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||||||| ||||||||||||||||||||||    
T  37707431 gggattttgcctcccttattttaaaactcggaatttta 37707468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 38781234 - 38781371
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  38781234 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccccctattttaaaactcggaattttaccccctctattttgattgaatc 38781333  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| ||| ||||||||||||||||||||||    
T  38781334 gggattttgccccccatattttaaaactcggaatttta 38781371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 28967931 - 28967794
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| | | |||||||||||| |  |||||| ||||| ||    
T  28967931 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccccctattttaaaattcggaattttaccccctctattttgattgaatc 28967832  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| ||| ||||||||||||||||||||||    
T  28967831 gggattttgccccccttattttaaaactcggaatttta 28967794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 28936955 - 28937092
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| | | |||||||||||| |  |||||| ||||| ||    
T  28936955 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccccctattttaaaattcggaattttaccccctctattttgattgaatc 28937054  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| ||| |||||||||||| |||||||||    
T  28937055 gggattttgccccccttattttaaaacttggaatttta 28937092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 28990425 - 28990563
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattta--ccccctctattttaatacttggaattttacccgccttatttttattgatt 150  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||   ||||| ||||||||| | | |||||||||||| |  |||||| ||||| |    
T  28990425 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccccccctattttaaaattcggaattttaccccctctattttgattgaat 28990524  T
Q  151 ctggattttgcctcccctattttaaaactcggaatttta 189  Q
    | |||||||||| ||| ||||||||||||||||||||||    
T  28990525 cgggattttgccccccttattttaaaactcggaatttta 28990563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 59 - 219
Target Start/End: Complemental strand, 765090 - 764930
Alignment:
Q  59 aatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattt 158  Q
    |||||||||||| ||  | ||||||||||||||||||||||  |||| ||||||||| | | |||||||||||| |  |||||| ||||| || ||||||    
T  765090 aatgcaattttatcctccttattttgattgaatctgaattttacccccctattttaaaattcggaattttaccccctctattttgattgaatcgggattt 764991  T
Q  159 tgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggatttt 219  Q
    |||| ||| |||||||||| |||||||||||       |||||||| |||||||| |||||    
T  764990 tgccccccttattttaaaattcggaattttaccccctctattttatgtttttcagaatttt 764930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 22201769 - 22201899
Alignment:
Q  59 aatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttacccgccttatttttattgattctggatt 157  Q
    ||||||||||||||||  |||||||||||||||||||| ||||| ||| ||||||||| | | |||||||||||| |  |||||| ||||| || |||||    
T  22201769 aatgcaattttaccccctctattttgattgaatctgaattttactccccctattttaaaattcggaattttaccccctctattttgattgaatcgggatt 22201868  T
Q  158 ttgcctcccctattttaaaactcggaatttta 189  Q
    || || ||| ||||||||||||||||||||||    
T  22201869 ttacc-cccttattttaaaactcggaatttta 22201899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 9513760 - 9513672
Alignment:
Q  101 ccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||| |||||||| ||| ||||||| ||||  | |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  9513760 ccccctatattttaaaactcggaatttaaccccacctattttgattgattctggattttgtctcccctattttaaaactcggaatttta 9513672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 28937653 - 28937573
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttaccc 132  Q
    ||||| ||||||||||||||||  |||||||||||||||||||| ||| ||||| ||||||||| ||| ||||||||||||    
T  28937653 ggcttaaatgcaattttaccccctctattttgattgaatctgaattttgccccccctattttaaaactcggaattttaccc 28937573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 28991120 - 28991040
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttaccc 132  Q
    ||||| ||||||||||||||||  |||||||||||||||||||| ||| ||||| ||||||||| ||| ||||||||||||    
T  28991120 ggcttaaatgcaattttaccccctctattttgattgaatctgaattttgccccccctattttaaaactcggaattttaccc 28991040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 9513162 - 9513275
Alignment:
Q  76 cctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaa 175  Q
    |||||||||||||||| || ||||   |||  |||||||| ||| |||||||||||| |  |||||| ||||| | ||||||||||| ||| ||||||||    
T  9513162 cctattttgattgaatttggattttgtccccttattttaaaactcggaattttaccccctctattttgattgaatttggattttgccccccttattttaa 9513261  T
Q  176 aactcggaatttta 189  Q
    ||||| ||||||||    
T  9513262 aactcagaatttta 9513275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 28967233 - 28967305
Alignment:
Q  59 aatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttaccc 132  Q
    ||||||||||||||||  |||||||||||||||||||||||  |||| ||||||||| ||| ||||||||||||    
T  28967233 aatgcaattttaccccctctattttgattgaatctgaattttgcccc-ctattttaaaactcggaattttaccc 28967305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 14036666 - 14036746
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctc-tattttaatacttggaattttaccc 132  Q
    ||||| |||||||||||||||| ||||||||||||||||| | ||||  |||||| |||||||| ||| ||||||||||||    
T  14036666 ggcttaaatgcaattttaccccccctattttgattgaatcgggattttgcccctcttattttaaaactcggaattttaccc 14036746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 28937642 - 28937576
Alignment:
Q  123 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||| |  |||||| ||||| |||| |||||||| ||||||||||||||||||||||||||    
T  28937642 aattttaccccctctattttgattgaatctgaattttgccccccctattttaaaactcggaatttta 28937576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 28991109 - 28991043
Alignment:
Q  123 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||| |  |||||| ||||| |||| |||||||| ||||||||||||||||||||||||||    
T  28991109 aattttaccccctctattttgattgaatctgaattttgccccccctattttaaaactcggaatttta 28991043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 14036677 - 14036743
Alignment:
Q  123 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||| || |||||| ||||| || |||||||||| | | ||||||||||||||||||||||    
T  14036677 aattttaccccccctattttgattgaatcgggattttgcccctcttattttaaaactcggaatttta 14036743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 22202454 - 22202381
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaatttta 129  Q
    ||||| ||||||||||||||||  ||| |||||||||||||||||||  |||| ||||||||| ||| |||||||||    
T  22202454 ggcttaaatgcaattttacccc--ctactttgattgaatctgaattttacccc-ctattttaaaactcggaatttta 22202381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 28967238 - 28967302
Alignment:
Q  123 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||| |  |||||| ||||| |||| ||||||||  |||||||||||||||||||||||||    
T  28967238 aattttaccccctctattttgattgaatctgaattttgcc--ccctattttaaaactcggaatttta 28967302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 28937569 - 28937514
Alignment:
Q  167 ctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    |||||||||||||||||||||||       |||||||| |||||||||||||||||    
T  28937569 ctattttaaaactcggaattttaccccccctattttatgtttttcaggattttgcc 28937514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 28967309 - 28967364
Alignment:
Q  167 ctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    |||||||||||||||||||||||       |||||||| |||||||||||||||||    
T  28967309 ctattttaaaactcggaattttaccccccctattttatgtttttcaggattttgcc 28967364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 28991036 - 28990981
Alignment:
Q  167 ctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    |||||||||||||||||||||||       |||||||| |||||||||||||||||    
T  28991036 ctattttaaaactcggaattttaccccccctattttatgtttttcaggattttgcc 28990981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 22201834 - 22201902
Alignment:
Q  64 aattttacccctcctattttgattgaatc-tgaatttaccccctctattttaatacttggaattttaccc 132  Q
    |||||||||||  ||||||||||||||||  || |||||||||| |||||||| ||| ||||||||||||    
T  22201834 aattttaccccctctattttgattgaatcgggattttaccccct-tattttaaaactcggaattttaccc 22201902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 28937026 - 28937095
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaatttaccccctct-attttaatacttggaattttaccc 132  Q
    |||||||||||  |||||||||||||||| | ||||  |||| || ||||||| ||||||||||||||||    
T  28937026 aattttaccccctctattttgattgaatcgggattttgccccccttattttaaaacttggaattttaccc 28937095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 28937579 - 28937534
Alignment:
Q  97 tttaccccctctattttaatacttggaattttacccgccttatttt 142  Q
    ||||||||||||||||||| ||| |||||||||||| || ||||||    
T  28937579 tttaccccctctattttaaaactcggaattttaccccccctatttt 28937534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 28967299 - 28967344
Alignment:
Q  97 tttaccccctctattttaatacttggaattttacccgccttatttt 142  Q
    ||||||||||||||||||| ||| |||||||||||| || ||||||    
T  28967299 tttaccccctctattttaaaactcggaattttaccccccctatttt 28967344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 28991046 - 28991001
Alignment:
Q  97 tttaccccctctattttaatacttggaattttacccgccttatttt 142  Q
    ||||||||||||||||||| ||| |||||||||||| || ||||||    
T  28991046 tttaccccctctattttaaaactcggaattttaccccccctatttt 28991001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 32825053 - 32825182
Alignment:
Q  61 tgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattctggatttt 159  Q
    |||| |||| |||| | ||||||||  ||||| |||||| |||||||||||||||| ||| |||||||||||| ||  ||||    |  ||||| |||||    
T  32825053 tgcagttttgccccccgtattttgacagaatcggaattttaccccctctattttaaaactcggaattttacccccccaatttaatgtttttctgaatttt 32825152  T
Q  160 gcctcccctattttaaaactcggaatttta 189  Q
    | | |||||||||||||| || ||||||||    
T  32825153 ggcccccctattttaaaaatctgaatttta 32825182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 17609373 - 17609338
Alignment:
Q  152 tggattttgcctcccctattttaaaactcggaatttt 188  Q
    ||||||||||| |||||||||||||||||||||||||    
T  17609373 tggattttgcc-cccctattttaaaactcggaatttt 17609338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 59 - 222
Target Start/End: Complemental strand, 13360452 - 13360289
Alignment:
Q  59 aatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattctggatt 157  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||| |  |||||||||||||||||||||    
T  13360452 aatgcaattttacccc-cctattttgattgaatctgaattttacctcctctattttaaaactcggaattttaccccctctatttttattgattctggatt 13360354  T
Q  158 ttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    || |||||||||||||||||||||||||||||       |||||||| |||||||||||||||||    
T  13360353 tttcctcccctattttaaaactcggaattttaccccctctattttatgtttttcaggattttgcc 13360289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 42501842 - 42501673
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||| | ||||||||| ||| |||||||||||| |  |||||||||||||||    
T  42501842 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttacccgccctattttaaaactcggaattttaccccctctatttttattgattc 42501744  T
Q  152 tggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    ||||||||||||||||||||||| |||| |||||||||       |||||||| |||||||||||||||||    
T  42501743 tggattttgcctcccctattttagaacttggaattttaccccccctattttatgtttttcaggattttgcc 42501673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 42865978 - 42866112
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||  |||| ||||||||| |||||||||||||||| |  ||||||||||||||||    
T  42865978 ggcttaaatgcaattttaccccgc-tattttgattgaatctgaattttacccc-ctattttaaaacttggaattttaccccctctatttttattgattct 42866075  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||||||||||||||||||||||||||||||    
T  42866076 ggattttgcctcccctattttaaaactcggaatttta 42866112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 39600069 - 39599897
Alignment:
Q  53 ggcttgaatgcaatttta---cccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattga 148  Q
    ||||| ||||||||||||   |||||| |||||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |  ||||||||||||    
T  39600069 ggcttaaatgcaattttaacccccctcatattttgattgaatctgaattttaccccccctattttaaaactcggaattttaccccctctatttttattga 39599970  T
Q  149 ttctggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    ||||||||||||||||||||||||||||||| |||||||||        |||||||||||||||||||||||||    
T  39599969 ttctggattttgcctcccctattttaaaacttggaattttaccctccc-attttatatttttcaggattttgcc 39599897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 35894832 - 35894665
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||| ||| |||||||||||| |  ||||||||||||||||    
T  35894832 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttacccccctattttaaaactcggaattttaccccctctatttttattgattct 35894734  T
Q  153 ggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    |||||||||||||||| ||||| |||| |||||||||       |||||||| |||||||||||||||||    
T  35894733 ggattttgcctcccctgttttagaacttggaatttta-cccccctattttatgtttttcaggattttgcc 35894665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 43109428 - 43109565
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| ||| || ||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  43109428 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacctcccctattttaaaactcggaattttaccccctctattttgattgaatc 43109527  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||||||| ||||||||||||||||||||||    
T  43109528 gggattttgcctcccttattttaaaactcggaatttta 43109565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 42257266 - 42257402
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||| ||| |||||||||||| |  |||||| ||||| ||     
T  42257266 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccccctattttaaaactcggaattttaccccctctattttgattgaatcg 42257365  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  42257366 ggattttgccccccttattttaaaactcggaatttta 42257402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 13359772 - 13359938
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| | |||| ||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  13359772 ggcttaaatgcaattttacccc-cctattttgattgaatctgaatttcatcccccctattttaaaactcggaattttaccccctctattttgattgaatc 13359870  T
Q  152 tggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggatttt 219  Q
     |||||||||| ||| ||||||||||||||||||||||       |||||||| |||||||| |||||    
T  13359871 gggattttgccccccttattttaaaactcggaattttaccccctctattttatgtttttcagaatttt 13359938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 35894117 - 35894254
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctc-tattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||| ||| ||||||||||||||||||||||||  |||||| |||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  35894117 ggcttaaatgcaattttatcccccctattttgattgaatctgaattttacccctcctattttaaaactcggaattttaccccctctattttgattgaatc 35894216  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| ||| |||||||||||| |||||||||    
T  35894217 gggattttgccccccttattttaaaacttggaatttta 35894254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 28864290 - 28864154
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||||||||| |||||||||||| |||||||||||||||  ||| || ||||||  ||| |||||||||||| |  |||||| ||||| ||     
T  28864290 ggcttaaatgcaattttatccctcctattttaattgaatctgaattttacccttccattttagaactcggaattttaccccctctattttgattgaatcg 28864191  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  28864190 ggattttgccccccttattttaaaactcggaatttta 28864154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 39599346 - 39599482
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||||||||||| ||||||| | |||| ||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  39599346 ggcttaaatgcaattttacccc-cctattttgattgaatttgaattttatcccccctattttaaaactcggaattttaccccctctattttgattgaatc 39599444  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     ||||||| || ||| ||||||||||||||||||||||    
T  39599445 gggatttttccccccttattttaaaactcggaatttta 39599482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 42501125 - 42501262
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| | |||||||||||||||||||||| ||||| | |||||||| | | |||||||||||| |  |||||| ||||| ||    
T  42501125 ggcttaaatgcaattttaccccccatattttgattgaatctgaattttaccccttttattttaaaattcggaattttaccccctctattttgattgaatc 42501224  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     | |||||||| ||| ||||||||||||||||||||||    
T  42501225 ggaattttgccccccttattttaaaactcggaatttta 42501262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 42258194 - 42258104
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttt 142  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| | |||||||||| |||||||||    
T  42258194 ggcttaaatgcaattttacccctcctattttgattgaatctgaatttcaccccccctattttaaaactcgaaattttaccccccttatttt 42258104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 43110353 - 43110263
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttt 142  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |||||||||    
T  43110353 ggcttaaatgcaattttaccccccctattttgattgaatctgaatttcaccccccctattttaaaactcggaattttaccccccttatttt 43110263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 42866684 - 42866549
Alignment:
Q  54 gcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    |||| ||||||||||||||| | ||||||||||||||||||||||| ||||||  |||||||| |||  ||||||||||| |  |||||| ||||| ||     
T  42866684 gcttaaatgcaattttaccc-tgctattttgattgaatctgaattttaccccccttattttaaaactcagaattttaccccctatattttgattgaatcg 42866586  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||| | ||| ||||||||||||||||||||||    
T  42866585 ggattttgtcccccttattttaaaactcggaatttta 42866549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 1628840 - 1628975
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| ||||| ||||||||| ||||||||||||||||| |||| ||||||||  ||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  1628840 ggcttaaatgcgattttaccc-tcctattttgattgaatatgaattttacccctcctattttaaaactcggaattttaccccctctattttgattgaatc 1628938  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     | |||||||| ||| ||||||||||||||||||||||    
T  1628939 ggaattttgcc-cccttattttaaaactcggaatttta 1628975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 12216266 - 12216132
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||||||||||| | | |||||||||||||| || ||||  |||| ||||||||| |||||||||||||||| |  |||||| ||||| |||    
T  12216266 ggcttaaatgcaattttaccac-cttattttgattgaatttggattttgcccc-ctattttaaaacttggaattttaccccctctattttgattgaatct 12216169  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    ||||||| || ||  |||||||||||||| |||||||    
T  12216168 ggattttaccccctttattttaaaactcgaaatttta 12216132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 222
Target Start/End: Original strand, 57136 - 57294
Alignment:
Q  61 tgcaattttacccctcctattttgattgaatctgaatttacccc-ctctattttaatacttggaattttacccgccttatttttattgattctggatttt 159  Q
    |||| ||||||||| |||||||||||||||| || ||||  ||| | ||||||||| |||  ||||||||||| |  |||||| ||||||| ||||||||    
T  57136 tgcagttttacccc-cctattttgattgaatttggattttgcccaccctattttaaaactgagaattttaccccc--tattttgattgattatggatttt 57232  T
Q  160 gcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    | |||| ||||||||||||||||| |||||       |||||||| |||||||||||||||||    
T  57233 gtctcctctattttaaaactcggattttta-cccccttattttatgtttttcaggattttgcc 57294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 10433589 - 10433462
Alignment:
Q  61 tgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccg-ccttatttttattgattctggatttt 159  Q
    |||| ||||||||| ||| |||||||||||| || ||||  |||| ||||||||| | ||||||||| ||||  ||||||||| ||||||| ||| ||||    
T  10433589 tgcagttttaccccccctgttttgattgaatttggattttgcccc-ctattttaaaatttggaatttgacccctccttattttgattgattttgggtttt 10433491  T
Q  160 gcctcccctattttaaaactcggaatttta 189  Q
    |||||||| |||||||||| ||||||||||    
T  10433490 gcctcccc-attttaaaacccggaatttta 10433462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 1629501 - 1629409
Alignment:
Q  97 tttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||| || ||||||||| |||||||||||||||| |  |||||| ||||| |  |||||||||| ||| ||||||||||||||||||||||    
T  1629501 tttacctcccctattttaaaacttggaattttaccccctctattttgattgaattgggattttgccccccttattttaaaactcggaatttta 1629409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 10432961 - 10433095
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttac-cccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| ||| |||||||||||||  |||||||||||||| || ||||   |||| ||||||||| ||| ||||||| || | | ||||||| ||||| ||    
T  10432961 ggcttaaatacaattttacccct--tattttgattgaatttggattttttcccccctattttaaaactcggaatttcactccctttattttgattgaatc 10433058  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
    |  |||||||| ||| ||||||||||||||||||||||    
T  10433059 taaattttgcc-cccttattttaaaactcggaatttta 10433095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 28863286 - 28863358
Alignment:
Q  59 aatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttaccc 132  Q
    |||||||||||||||| |||||||||||||||| |||||||  |||| ||||||||| | | ||||||||||||    
T  28863286 aatgcaattttacccc-cctattttgattgaatttgaatttttcccccctattttaaaattcggaattttaccc 28863358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 24402407 - 24402519
Alignment:
Q  75 tcctattttgattgaatct-gaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctatttt 173  Q
    ||||||||||||||||||| || ||||||||| ||||||||| ||| || |||||||||  | |||||| || |  | ||||||||||| | ||||||||    
T  24402407 tcctattttgattgaatctagattttaccccc-ctattttaaaactcggtattttaccc--catattttgatcgtatttggattttgcccctcctatttt 24402503  T
Q  174 aaaactcggaatttta 189  Q
    |||| |||||||||||    
T  24402504 aaaattcggaatttta 24402519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 183
Target Start/End: Original strand, 12215662 - 12215708
Alignment:
Q  137 tatttttattgattctggattttgcctcccctattttaaaactcgga 183  Q
    |||||| ||||||||| ||||||||||||||||| ||||||||||||    
T  12215662 tattttcattgattcttgattttgcctcccctatgttaaaactcgga 12215708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 43110342 - 43110276
Alignment:
Q  123 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||| || |||||| ||||| |||| ||||  || ||||||||||||||||||||||||||    
T  43110342 aattttaccccccctattttgattgaatctgaatttcaccccccctattttaaaactcggaatttta 43110276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 1628910 - 1628978
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttaccc 132  Q
    |||||||||||  |||||||||||||||| ||||||  ||||  |||||||| ||| ||||||||||||    
T  1628910 aattttaccccctctattttgattgaatcggaattttgcccccttattttaaaactcggaattttaccc 1628978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 57755 - 57704
Alignment:
Q  138 atttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    ||||| ||||| | ||||||||||| | ||||||||||||||||||||||||    
T  57755 attttgattgaatttggattttgccccacctattttaaaactcggaatttta 57704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 35894188 - 35894257
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaatttaccccctct-attttaatacttggaattttaccc 132  Q
    |||||||||||  |||||||||||||||| | ||||  |||| || ||||||| ||||||||||||||||    
T  35894188 aattttaccccctctattttgattgaatcgggattttgccccccttattttaaaacttggaattttaccc 35894257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 42501196 - 42501265
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaatttaccccctct-attttaatacttggaattttaccc 132  Q
    |||||||||||  |||||||||||||||| ||||||  |||| || ||||||| ||| ||||||||||||    
T  42501196 aattttaccccctctattttgattgaatcggaattttgccccccttattttaaaactcggaattttaccc 42501265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 34267747 - 34267909
Alignment:
Q  59 aatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattt 158  Q
    |||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||| ||| |||||||||||| |  ||||||||||||||||||||||    
T  34267747 aatgcaattttacccc-cctattttgattgaatctgaattttacccccctattttaaaactcggaattttaccccctctatttttattgattctggattt 34267845  T
Q  159 tgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    | |||||||||||||||||||||||||||||       |||||||| |||||||||||||||||    
T  34267846 ttcctcccctattttaaaactcggaattttaccccctctattttatgtttttcaggattttgcc 34267909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 45753435 - 45753299
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||  |||||||||||||| ||| ||||||||| || |  |||||| ||||| ||     
T  45753435 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccctctattttaaaactcggaattttatcccctctattttgattgaatcg 45753336  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||| ||  ||||||||||||||||||||||    
T  45753335 ggattttgccccctttattttaaaactcggaatttta 45753299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 34268429 - 34268293
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| |  |||||| ||||| |     
T  34268429 ggcttaaatgcaattttaccc-tcctattttgattgaatctgaatttcaccccccctattttaaaactcggaattttaccccctctattttgattgaatt 34268331  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| ||| ||||||||||||||||||||||    
T  34268330 gggattttgccccccttattttaaaactcggaatttta 34268293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 51928470 - 51928335
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||  |||  ||||||||| ||| |||||||||||| |  |||||| ||||| |||    
T  51928470 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttaccctcctattttaaaactcggaattttaccccctctattttgattgaatct 51928372  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||||||  ||||||||||||| ||||||||    
T  51928371 ggattttgcctcctttattttaaaactcagaatttta 51928335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 50772762 - 50772897
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||| |||||||| ||||||||||||||||| |||||||  |||| ||||||||| ||| |||||||||||| |  |||||| || || |||    
T  50772762 ggcttaaatgcagttttaccc-tcctattttgattgaatttgaattttgcccccctattttaaaactcggaattttaccccctctattttgatagaatct 50772860  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    | |||||||| | | ||||||||||||||||||||||    
T  50772861 gaattttgcccctcttattttaaaactcggaatttta 50772897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 38739231 - 38739368
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||| | | ||||||||||||||||||| ||||||||  ||||||||| ||| ||||||||||||    |||||| ||||| ||    
T  38739231 ggcttaaatgcaattttacctcccatattttgattgaatctgaattttacccctcctattttaaaactcggaattttaccccttctattttgattgaatc 38739330  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     | |||||||| ||  ||||||||||||||||||||||    
T  38739331 ggaattttgccccctttattttaaaactcggaatttta 38739368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 40919806 - 40919872
Alignment:
Q  122 gaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    ||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40919806 gaattttacccccct-atttttattgattctggattttgccttccctattttaaaactcggaatttta 40919872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 41551339 - 41551202
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| | |  ||||||||||| |   ||||| ||||| ||    
T  41551339 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccccctattttaaaattcagaattttaccccctcaattttgattgaatc 41551240  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     | |||||||| |   |||||||||||||| |||||||    
T  41551239 ggaattttgccccatttattttaaaactcgaaatttta 41551202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 38739879 - 38739779
Alignment:
Q  122 gaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgc 221  Q
    ||||||||||| |  |||||||||||||||| ||||||||||||||||||||| || | |||||||||       |||||||| ||||||||||||||||    
T  38739879 gaattttaccccctctatttttattgattctagattttgcctcccctattttagaatttggaattttaccccccctattttatgtttttcaggattttgc 38739780  T
Q  222 c 222  Q
    |    
T  38739779 c 38739779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 38739920 - 38739859
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctatttt 113  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  38739920 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccccctctatttt 38739859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 45752778 - 45752858
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttaccc 132  Q
    ||||| ||||||||||||||||  |||||||||||||||||||| ||| ||||| ||||||||| ||| ||||||||||||    
T  45752778 ggcttaaatgcaattttaccccctctattttgattgaatctgaattttgccccccctattttaaaactcggaattttaccc 45752858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 40834215 - 40834283
Alignment:
Q  153 ggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    |||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||    
T  40834215 ggattttgcctcccctattttaaaactcggaatttta-cccccttattttatgtttttcaggattttgcc 40834283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 41550671 - 41550755
Alignment:
Q  53 ggcttgaatgcaattttac----ccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttaccc 132  Q
    ||||| |||||||||||||    ||| ||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||||    
T  41550671 ggcttaaatgcaattttacaccccccccctattttgattgaatctgaattttaccccccctattttaaaatttggaattttaccc 41550755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 45752789 - 45752855
Alignment:
Q  123 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||| |  |||||| ||||| |||| |||||||| ||||||||||||||||||||||||||    
T  45752789 aattttaccccctctattttgattgaatctgaattttgccccccctattttaaaactcggaatttta 45752855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 38739302 - 38739371
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaattta-ccccctctattttaatacttggaattttaccc 132  Q
    |||||||||||| |||||||||||||||| ||||||  |||||| |||||||| ||| ||||||||||||    
T  38739302 aattttaccccttctattttgattgaatcggaattttgccccctttattttaaaactcggaattttaccc 38739371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 50772831 - 50772900
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaatttaccccctct-attttaatacttggaattttaccc 132  Q
    |||||||||||  |||||||||| ||||||||||||  ||||||| ||||||| ||| ||||||||||||    
T  50772831 aattttaccccctctattttgatagaatctgaattttgcccctcttattttaaaactcggaattttaccc 50772900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 40834795 - 40834732
Alignment:
Q  125 ttttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||| ||||||||| ||||| | ||||||||| ||||| |||||||||| |||||||||||    
T  40834795 ttttaccc-ccttattttgattgaatttggattttgtctcccgtattttaaaattcggaatttta 40834732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 41550700 - 41550785
Alignment:
Q  137 tatttttattgattctggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    |||||| ||||| |||| ||||| || |||||||||||||| | |||||||||       |||||||| |||||||||||||||||    
T  41550700 tattttgattgaatctgaattttaccccccctattttaaaatttggaattttacccctcctattttatgtttttcaggattttgcc 41550785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 35576723 - 35576852
Alignment:
Q  61 tgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttat-tgattctggattt 158  Q
    |||| |||| |||| | ||||||||  ||||| |||||| |||||||||||||||| ||| |||||||||||| ||| | ||| || |  ||||| ||||    
T  35576723 tgcagttttgccccccgtattttgacagaatcggaattttaccccctctattttaaaactcggaattttaccc-cctcaatttaatgtttttctgaattt 35576821  T
Q  159 tgcctcccctattttaaaactcggaatttta 189  Q
    || | |||||||||||||| || ||||||||    
T  35576822 tggcccccctattttaaaaatctgaatttta 35576852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 45752862 - 45752917
Alignment:
Q  167 ctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    |||||||||||||||||||||||       |||||||| |||||||||||||||||    
T  45752862 ctattttaaaactcggaattttaccccccctattttatgtttttcaggattttgcc 45752917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 45752852 - 45752897
Alignment:
Q  97 tttaccccctctattttaatacttggaattttacccgccttatttt 142  Q
    ||||||||||||||||||| ||| |||||||||||| || ||||||    
T  45752852 tttaccccctctattttaaaactcggaattttaccccccctatttt 45752897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 17603728 - 17603685
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt 99  Q
    ||||| |||||||||||||||||   |||||||||||||||||||||    
T  17603728 ggcttaaatgcaattttacccct---attttgattgaatctgaattt 17603685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 32554752 - 32554788
Alignment:
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    ||||||| || ||||||||||||||||||||||||||    
T  32554752 ggattttaccacccctattttaaaactcggaatttta 32554788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 53 - 219
Target Start/End: Original strand, 1963462 - 1963628
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||  |||| |||||| || |||   |||||||||| || ||||||||||||||||    
T  1963462 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccccctatttaaaaactcaaaattttaccccccctatttttattgattct 1963561  T
Q  153 ggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggatttt 219  Q
    |||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||    
T  1963562 ggattttgcctcccctattttaaaactcggaattttaccccccctattttatgtttttcaggatttt 1963628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 47378508 - 47378677
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| ||||||||||||  || |||||||||||||||||||||||| | |||||||||||||| ||| |||||||||||  |  |||||||||||||||    
T  47378508 ggcttaaatgcaattttagtccccctattttgattgaatctgaattttatcccctctattttaaaactcggaattttacctcctctatttttattgattc 47378607  T
Q  152 tggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||    
T  47378608 tggattttgcctcccctattttaaaactcggaatttta-cccccctattttatgtttttcaggattttgcc 47378677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 8294428 - 8294596
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||| ||||| |||||||||||||||| ||||||| |||||| ||||||||| ||| ||||||||||||  || |||||||||||||     
T  8294428 ggcttaaatgcaatttaacccc-cctattttgattgaatttgaattttaccccccctattttaaaactcggaattttacccctct-atttttattgatta 8294525  T
Q  152 tggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    |||||||| |||||||||||||||||||||||||||||       |||||||| |||||||||||||||||    
T  8294526 tggatttttcctcccctattttaaaactcggaattttaccccctctattttatgtttttcaggattttgcc 8294596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 42942160 - 42941992
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| ||||||||||||| || ||||||||||||||||||||||||  |||| ||||||||| ||| |||||||||||| |  ||||||||||||||||    
T  42942160 ggcttaaatgcaattttactcc-cctattttgattgaatctgaattttacccccctattttaaaactcggaattttaccccctctatttttattgattct 42942062  T
Q  153 ggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    | |||||||||||||||||||| || | | |||||||       |||||||| |||||||||||||||||    
T  42942061 gaattttgcctcccctattttagaatttgaaattttaccctccctattttatgtttttcaggattttgcc 42941992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 221
Target Start/End: Original strand, 2093924 - 2094085
Alignment:
Q  59 aatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatactt-ggaattttacccgccttatttttattgattctggat 156  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||  |||||||| ||||   |||||||||| |  ||||||||||||||||||||    
T  2093924 aatgcaattttacccc-cctattttgattgaatctgaattttaccccccttattttaa-acttcaaaattttaccccctctatttttattgattctggat 2094021  T
Q  157 tttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgc 221  Q
    |||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||||    
T  2094022 tttgcctcccctattttaaaactcggaatttta-cccccctattttatgtttttcaggattttgc 2094085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 189
Target Start/End: Complemental strand, 31902666 - 31902549
Alignment:
Q  71 cccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctat 170  Q
    |||| |||||||||||||||||| |||||  ||| |||||||||| |||||||||||||||| |  ||||||||||| ||||||||||||||||||||||    
T  31902666 ccccccctattttgattgaatctcaattttaccc-tctattttaaaacttggaattttaccccctctatttttattggttctggattttgcctcccctat 31902568  T
Q  171 tttaaaactcggaatttta 189  Q
    |||||||||||||||||||    
T  31902567 tttaaaactcggaatttta 31902549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 8295723 - 8295588
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  8295723 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttaccccct-tattttaaaactcggaattttaccccctctattttgattgaatc 8295626  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| ||| |||||||||||||| |||||||    
T  8295625 aggattttgccccccttattttaaaactcgaaatttta 8295588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 28882318 - 28882455
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| ||||||| | ||||||||| ||| |||||||||||| |  |||||| ||||| |     
T  28882318 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttaccctccctattttaaaactcggaattttaccccctctattttgattgaatt 28882417  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| ||| |||||||||||||| |||||||    
T  28882418 gggattttgccccccttattttaaaactcgaaatttta 28882455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 188
Target Start/End: Complemental strand, 37399500 - 37399388
Alignment:
Q  76 cctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaa 175  Q
    |||||||||||||||| || ||||  |||| ||||||||| ||| |||||||||||| || |||||| |||||||||||||||| |||| ||||||||||    
T  37399500 cctattttgattgaatttggattttgcccccctattttaaaactcggaattttaccccccctattttgattgattctggattttccctctcctattttaa 37399401  T
Q  176 aactcggaatttt 188  Q
    |||||||||||||    
T  37399400 aactcggaatttt 37399388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 42941443 - 42941580
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctct-attttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| | ||||||||||||||||||||||  || |||| ||||||| | |||||||||||||| |  |||||| ||||| ||    
T  42941443 ggcttaaatgcaattttaccccccatattttgattgaatctgaattttacctctcttattttaaaatttggaattttaccccctctattttgattgaatc 42941542  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     | |||||||| ||| ||||||||||||||||||||||    
T  42941543 ggaattttgccccccttattttaaaactcggaatttta 42941580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 71 - 189
Target Start/End: Complemental strand, 1964159 - 1964040
Alignment:
Q  71 cccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctccccta 169  Q
    |||| |||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||| |  |||||| ||||| || | |||||||| ||| ||    
T  1964159 ccccccctattttgattgaatctgaattttaccccccctattttaaaacttggaattttaccccctctattttgattgaatcagaattttgcccccctta 1964060  T
Q  170 ttttaaaactcggaatttta 189  Q
    |||| |||||||||||||||    
T  1964059 ttttgaaactcggaatttta 1964040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 28883255 - 28883175
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttaccc 132  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| |||  |||||||||||    
T  28883255 ggcttaaatgcaattttaccccccctattttgattgaatctgaatttcaccccccctattttaaaactcagaattttaccc 28883175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 31902038 - 31902171
Alignment:
Q  54 gcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctg 153  Q
    |||| ||||||||||||||||| ||||||||||||||| |||||||  || | ||||||||| | |||||||||||||| |  |||||| ||||| || |    
T  31902038 gcttaaatgcaattttaccccttctattttgattgaatatgaattttacctc-ctattttaaaatttggaattttaccccctctattttgattgaatcgg 31902136  T
Q  154 gattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||| || ||| ||||||||| |||| |||||||    
T  31902137 gattttacc-cccttattttaaatctcgaaatttta 31902171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 79 - 189
Target Start/End: Complemental strand, 2094592 - 2094482
Alignment:
Q  79 attttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaac 178  Q
    |||||||||||||||||||||  || | ||||||||| |||  |||||||||||    |||||| ||||| || |||||||||| ||| |||||||||||    
T  2094592 attttgattgaatctgaattttacctccctattttaaaactctgaattttaccccttctattttgattgaatcgggattttgccccccttattttaaaac 2094493  T
Q  179 tcggaatttta 189  Q
    |||||||||||    
T  2094492 tcggaatttta 2094482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 47379174 - 47379082
Alignment:
Q  97 tttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||| |||| ||||||||| ||| |||||||||||| |  |||||| ||||| || ||||||||||  || ||||||||||||||||||||||    
T  47379174 tttatcccccctattttaaaactcggaattttaccccctctattttgattgaatcgggattttgccctccatattttaaaactcggaatttta 47379082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 37399498 - 37399447
Alignment:
Q  137 tatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||| ||||| | ||||||||||| ||||||||||||||||||||||||||    
T  37399498 tattttgattgaatttggattttgcc-cccctattttaaaactcggaatttta 37399447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 42791810 - 42791907
Alignment:
Q  76 cctattttgattgaatctgaatttaccccctct-attttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctatttta 174  Q
    |||||||||||||||| |||||||  | ||||| ||||| | |||  |||||||||||  |||||||| ||||| ||||||||||| | |||||||||||    
T  42791810 cctattttgattgaatttgaattttacacctcttattttgaaactcagaattttaccc--cttattttaattgaatctggattttgtcccccctatttta 42791907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 28883244 - 28883178
Alignment:
Q  123 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||| || |||||| ||||| |||| ||||  || ||||||||||||||||| ||||||||    
T  28883244 aattttaccccccctattttgattgaatctgaatttcaccccccctattttaaaactcagaatttta 28883178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 2094548 - 2094479
Alignment:
Q  64 aattttacccctcctattttgattgaatc-tgaatttaccccctctattttaatacttggaattttaccc 132  Q
    |||||||||||| ||||||||||||||||  || ||| |||||  |||||||| ||| ||||||||||||    
T  2094548 aattttaccccttctattttgattgaatcgggattttgccccccttattttaaaactcggaattttaccc 2094479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 37399453 - 37399388
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaatttaccccct-ctattttaatacttggaatttt 128  Q
    ||||||||||| |||||||||||||| |||| |||| ||| || ||||||||| ||| ||||||||    
T  37399453 aattttaccccccctattttgattgattctggattttccctctcctattttaaaactcggaatttt 37399388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 42941514 - 42941583
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaatttaccccctct-attttaatacttggaattttaccc 132  Q
    |||||||||||  |||||||||||||||| ||||||  |||| || ||||||| ||| ||||||||||||    
T  42941514 aattttaccccctctattttgattgaatcggaattttgccccccttattttaaaactcggaattttaccc 42941583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 5564193 - 5564362
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| ||||||||||||||||  ||||||||||||||| ||||||| |||||| ||||||||| |||  ||||||||||| ||| ||||||||||||||    
T  5564193 ggcttaaatgcaattttaccccctctattttgattgaatttgaattttaccccccctattttaaaactcagaattttacccccct-atttttattgattc 5564291  T
Q  152 tggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||    
T  5564292 tggattttgcctcccctattttaaaactcggaattttaccccccctattttatgtttttcaggattttgcc 5564362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 61 - 219
Target Start/End: Complemental strand, 6505331 - 6505173
Alignment:
Q  61 tgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttg 160  Q
    |||| ||||||||| |||||||||||||| | |||||||  |||| ||||||||| ||| |||||||||||| |  ||||||||||||||||||||||||    
T  6505331 tgcagttttaccccccctattttgattgattttgaattttgcccccctattttaaaactcggaattttaccccctctatttttattgattctggattttg 6505232  T
Q  161 cctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggatttt 219  Q
    |||||||||||||||||||||||| ||||       |||||||| ||||||||||||||    
T  6505231 cctcccctattttaaaactcggaactttaccccccctattttatgtttttcaggatttt 6505173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 6811206 - 6811037
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||| |||| || |||||||| ||| ||||||||||||    |||||||||||||||    
T  6811206 ggcttaaatgcaattttatccctcctattttgattgaatctgaattttaccctct-tattttaaaactcggaattttaccctttctatttttattgattc 6811108  T
Q  152 tggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    ||||||||| || |||||||||||||||| ||||||||       |||||||| |||||||||||||||||    
T  6811107 tggattttgtcttccctattttaaaactcagaattttaccccccctattttatgtttttcaggattttgcc 6811037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 52214588 - 52214463
Alignment:
Q  97 tttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttannnnnnn 196  Q
    ||||||||| ||||||||| ||| |||||||||||| |  ||||||||||||||||||||||| |||||||||||||||||||||||||||||           
T  52214588 tttaccccccctattttaaaactcggaattttaccccctctatttttattgattctggatttttcctcccctattttaaaactcggaattttaccccctc 52214489  T
Q  197 tattttatatttttcaggattttgcc 222  Q
    |||||||| |||||||||||||||||    
T  52214488 tattttatgtttttcaggattttgcc 52214463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 6810499 - 6810634
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||  |||| ||||||||| ||| |||||||||| | |  |||||| ||||| ||     
T  6810499 ggcttaaatgcaattttaccc-tcctattttgattgaatctgaattttacccccctattttaaaactcggaattttactccctctattttaattgaatcg 6810597  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  6810598 ggattttgccccccttattttaaaactcggaatttta 6810634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 37596673 - 37596808
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| ||||||||||||||||  ||||||||||||||| |||||||  |||| ||||||||| |||||||||||||||| |  |||||| ||||| ||     
T  37596673 ggcttaaatgcaattttaccccctctattttgattgaatttgaatttcacccc-ctattttaaaacttggaattttaccccctctattttgattgaatcg 37596771  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||| | | ||||||||||||||||||||||    
T  37596772 ggattttgcccctcttattttaaaactcggaatttta 37596808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 189
Target Start/End: Complemental strand, 26617573 - 26617454
Alignment:
Q  71 cccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctccccta 169  Q
    |||| |||||||||||||||||||||||| |||||||||||||||| | | |||||||||||| |  |||||| ||||| || |||||||||| ||| ||    
T  26617573 ccccccctattttgattgaatctgaattttaccccctctattttaaaattcggaattttaccccctctattttgattgaatcgggattttgcccccctta 26617474  T
Q  170 ttttaaaactcggaatttta 189  Q
    ||||||||||||||||||||    
T  26617473 ttttaaaactcggaatttta 26617454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 6504666 - 6504802
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| | || | ||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  6504666 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttatcctccctattttaaaactcggaattttaccccctctattttgattgaatc 6504764  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| ||  ||||||||||||||||||||||    
T  6504765 gggattttgcccccgttattttaaaactcggaatttta 6504802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 51247254 - 51247127
Alignment:
Q  61 tgcaattttacccctcctattttgattgaatctgaattta-ccccctctattttaatacttggaattttacccgccttatttttattgattctggatttt 159  Q
    |||| ||||| ||| |||||||||||||||| || ||||  ||||||||||||||| ||| | |||||||||| |  |||||| |||||||||| |||||    
T  51247254 tgcagttttatcccccctattttgattgaatttggattttgccccctctattttaaaactcgaaattttaccctc--tattttgattgattctgaatttt 51247157  T
Q  160 gcctcccctattttaaaactcggaatttta 189  Q
    |||||| ||||||||||||| |||||||||    
T  51247156 gcctcctctattttaaaacttggaatttta 51247127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 52213914 - 52214049
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| ||||||||||||||  ||||||||||||||| | ||||||| ||| || ||||||||| |||||||||||||||| |  |||||| ||||| |     
T  52213914 ggcttaaatgcaattttacc--tcctattttgattgactttgaattttacctcccctattttaaaacttggaattttaccccctctattttgattgaatt 52214011  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| ||| |||||||||||| |||||||||    
T  52214012 gggattttgccccccttattttaaaacttggaatttta 52214049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 37597064 - 37596951
Alignment:
Q  76 cctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctatttta 174  Q
    |||||||| ||||||||||||||| |||||| ||||||||| |||||||||||||||| |  |||||| | ||| || | |||||||| ||| |||||||    
T  37597064 cctattttaattgaatctgaattttaccccccctattttaaaacttggaattttaccccctctattttgactgaatcggaattttgcc-cccttatttta 37596966  T
Q  175 aaactcggaatttta 189  Q
    |||||||||||||||    
T  37596965 aaactcggaatttta 37596951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 219
Target Start/End: Complemental strand, 5564862 - 5564740
Alignment:
Q  97 tttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaattttannnnnnn 196  Q
    ||||||||| ||||||||| ||| |||||||||||| |  |||||| ||||| || | |||||||| ||| ||||||||||||||||||||||           
T  5564862 tttaccccccctattttaaaactcggaattttaccccctctattttgattgaatcggaattttgccccccttattttaaaactcggaattttaccccctc 5564763  T
Q  197 tattttatatttttcaggatttt 219  Q
    |||||||| |||||||| |||||    
T  5564762 tattttatgtttttcagaatttt 5564740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 30456076 - 30456188
Alignment:
Q  76 cctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattc-tggattttgcctcccctatttta 174  Q
    |||||||||||||||| || ||||  |||||||||||||| ||| |||||||  ||| || |||||| | |||||| |  |||||||||| |||||||||    
T  30456076 cctattttgattgaatttggattttgcccctctattttaaaactcggaattt--ccctccctattttgactgattcttttattttgcctctcctatttta 30456173  T
Q  175 aaactcggaatttta 189  Q
    |||||| ||||||||    
T  30456174 aaactcagaatttta 30456188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 26616908 - 26616984
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttaccc 132  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||  |||| |||| |||| ||| ||||||||||||    
T  26616908 ggcttaaatgcaattttacccc--ctattttgattgaatctgaattttgcccc-ctatgttaaaactcggaattttaccc 26616984  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 51247180 - 51247124
Alignment:
Q  77 ctattttgattgaatctgaatttaccc-cctctattttaatacttggaattttaccc 132  Q
    ||||||||||||| |||||||||  || |||||||||||| ||||||||||||||||    
T  51247180 ctattttgattgattctgaattttgcctcctctattttaaaacttggaattttaccc 51247124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 7708732 - 7708682
Alignment:
Q  64 aattttacccctcctattttgattgaatct-gaatttaccccctctatttt 113  Q
    |||||||||||||||||||||||||||| | || ||||||||| |||||||    
T  7708732 aattttacccctcctattttgattgaatttggattttaccccccctatttt 7708682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 5564836 - 5564767
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttaccc 132  Q
    |||||||||||  |||||||||||||||| ||| ||| |||||  |||||||| ||| ||||||||||||    
T  5564836 aattttaccccctctattttgattgaatcggaattttgccccccttattttaaaactcggaattttaccc 5564767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 7708800 - 7708682
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||||| |||||||  |||| |||||||||||| ||  |||   ||| ||||||||| ||| ||||||||||||  | |||||| ||||| | |    
T  7708800 ggcttaaatgcagttttacc--tcctgttttgattgaatttgggttttgtccccctattttaaaactcggaattttacccctcctattttgattgaattt 7708703  T
Q  153 ggattttgcctcccctatttt 173  Q
    ||||||| || ||||||||||    
T  7708702 ggattttaccccccctatttt 7708682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 37596742 - 37596811
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaatttaccccctct-attttaatacttggaattttaccc 132  Q
    |||||||||||  |||||||||||||||| | ||||  ||||||| ||||||| ||| ||||||||||||    
T  37596742 aattttaccccctctattttgattgaatcgggattttgcccctcttattttaaaactcggaattttaccc 37596811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 14922051 - 14922123
Alignment:
Q  61 tgcaattttacccctcctattttgattgaatctgaatttaccccctct-attttaatacttggaattttaccc 132  Q
    |||| |||| |||| | |||||||| |||||| ||||||  ||||||| ||||||| ||||||||||||||||    
T  14922051 tgcagttttgccccccgtattttgactgaatcggaattttacccctcttattttaaaacttggaattttaccc 14922123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 14922562 - 14922490
Alignment:
Q  61 tgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttaccc 132  Q
    |||| |||| |||| ||||||||||  ||||| |||||| |||||| ||||||||| ||| ||||||||||||    
T  14922562 tgcagtttttccccccctattttgacagaatcggaattttaccccccctattttaaaactcggaattttaccc 14922490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 32473879 - 32473807
Alignment:
Q  61 tgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttaccc 132  Q
    |||| |||| |||| |||||||||| ||||||  ||||| |||||| ||||||||| ||| ||||||||||||    
T  32473879 tgcagttttcccccccctattttgactgaatcgaaattttaccccccctattttaaaactcggaattttaccc 32473807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 37597016 - 37596948
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttaccc 132  Q
    |||||||||||  ||||||||| |||||| ||||||  ||||  |||||||| ||| ||||||||||||    
T  37597016 aattttaccccctctattttgactgaatcggaattttgcccccttattttaaaactcggaattttaccc 37596948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 29361604 - 29361773
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| ||| |||||||||||| | ||||||||||||||||    
T  29361604 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttaccccccctattttaaaactcggaattttaccctctttatttttattgattc 29361702  T
Q  152 tggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    ||||| || ||| ||||||||||||||| |||||||||       |||||||| |||||||||||||||||    
T  29361703 tggatatttccttccctattttaaaacttggaattttaccccctctattttatgtttttcaggattttgcc 29361773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 17335845 - 17335677
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| ||| |||||||||||| |||||||||||||||||||||||| | |||| ||||||||| |||  ||||||||||  |  |||||||||||||||    
T  17335845 ggcttaaatacaattttacccc-cctattttgattgaatctgaattttatcccccctattttaaaactcagaattttacctcctctatttttattgattc 17335747  T
Q  152 tggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
    ||||||||||||||||||||||| |||| |||||||||       |||||||| |||||||||||||||||    
T  17335746 tggattttgcctcccctattttagaacttggaatttta-cccccctattttatgtttttcaggattttgcc 17335677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 31066486 - 31066352
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||   || |||||| ||||| ||    
T  31066486 ggcttaaatgcaattttaccccccctattttgattgaatctgaattttacccccactattttaaaactcggaattttac---ccctattttgattgaatc 31066390  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| | | ||||||||||||||||||||||    
T  31066389 gggattttgcccctcttattttaaaactcggaatttta 31066352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 17192520 - 17192383
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||| |||  ||||||||  ||| |||||||||||| |  |||||| ||||| ||    
T  17192520 ggcttaaatgcaattttacccctcctattttgattgaatctgaattttatccctcctattttagaactcggaattttaccccctctattttgattgaatc 17192421  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| ||| ||||||||||||| ||||||||    
T  17192420 gggattttgccccccttattttaaaactcagaatttta 17192383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 17335132 - 17335268
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctc-tattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||| |||||||||||||||  |||||| |||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  17335132 ggcttaaatgcaattttacccc-cctattttaattgaatctgaattttacccctcctattttaaaactcggaattttaccccctctattttgattgaatc 17335230  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| ||| ||||||||||||| ||||||||    
T  17335231 gggattttgccccccttattttaaaactcagaatttta 17335268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 31065797 - 31065931
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattct 152  Q
    ||||| |||| ||||| ||||| | |||||||||||||| |||||||   ||| ||||||||| | || ||||||||||| |  ||||||||||||||||    
T  31065797 ggcttaaatgtaatttcacccc-cttattttgattgaatttgaattttatccc-ctattttaaaatttagaattttaccccctctatttttattgattct 31065894  T
Q  153 ggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||| |||||||||||||||| |||||||||||    
T  31065895 ggattttgtctcccctattttaaaattcggaatttta 31065931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 24814460 - 24814338
Alignment:
Q  101 ccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta-nnnnnnntat 199  Q
    ||||| ||||||||| ||| |||||||||| | |  |||||||||||||||||||||||||||| ||||||||||||||||||| ||||        |||    
T  24814460 ccccccctattttaaaactcggaattttactccctctatttttattgattctggattttgcctctcctattttaaaactcggaactttacccccccctat 24814361  T
Q  200 tttatatttttcaggattttgcc 222  Q
    ||||| |||||||||||||||||    
T  24814360 tttatgtttttcaggattttgcc 24814338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 32754982 - 32754853
Alignment:
Q  59 aatgcaattttacccctcctattttgattgaatctgaattta-ccccctctattttaatacttggaattttacccgccttatttttattgattctggatt 157  Q
    |||||| ||||||||| | |||||||||||||| || ||||  ||||||||||||||| ||| |||||||||||| |  |||||| ||||| ||||||||    
T  32754982 aatgcagttttacccc-cttattttgattgaatttggatttttccccctctattttaaaactcggaattttaccccctctattttgattgaatctggatt 32754884  T
Q  158 ttgcctcccctattttaaaactcggaatttta 189  Q
    || ||| ||  |||||||||||||||||||||    
T  32754883 ttccct-cctaattttaaaactcggaatttta 32754853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 176
Target Start/End: Original strand, 15272872 - 15272997
Alignment:
Q  53 ggcttgaatgcaattttac-ccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgatt 150  Q
    ||||| ||||||||||||| ||| |||||||| ||||||||||||||| |||||| ||||||||| ||| |||||||||||| |  |||||| ||||| |    
T  15272872 ggcttaaatgcaattttacacccccctattttaattgaatctgaattttaccccccctattttaaaactcggaattttaccctctctattttgattgaat 15272971  T
Q  151 ctggattttgcctcccctattttaaa 176  Q
    | |||||| | | ||| |||||||||    
T  15272972 cgggatttcggcccccttattttaaa 15272997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 6181211 - 6181131
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttaccc 132  Q
    ||||| |||||||||||| ||| | ||||||||||||||||||| |||||||| |||||||||| ||| ||||||||||||    
T  6181211 ggcttaaatgcaattttatcccccttattttgattgaatctgaattttaccccttctattttaaaactcggaattttaccc 6181131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 6180606 - 6180698
Alignment:
Q  97 tttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||||||  |||||||| ||| |||||||||||| |  |||||| ||||| || |||||||||| | | ||||||||||||||||||||||    
T  6180606 tttaccccccatattttaaaactcggaattttaccccctctattttgattgaatcgggattttgcccctcttattttaaaactcggaatttta 6180698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 132
Target Start/End: Original strand, 17191853 - 17191926
Alignment:
Q  59 aatgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttaccc 132  Q
    |||||||||||||||| ||||||||||||||||||||| ||| |||  |||||||||| ||| ||||||||||||    
T  17191853 aatgcaattttacccc-cctattttgattgaatctgaattttgccctttctattttaaaactcggaattttaccc 17191926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 15273821 - 15273781
Alignment:
Q  59 aatgcaattttacccctcctattttgattgaatctgaattt 99  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  15273821 aatgcaattttaccccccctattttgattgaatctgaattt 15273781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 15272898 - 15272950
Alignment:
Q  137 tatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    |||||| ||||| |||| ||||| || ||||||||||||||||||||||||||    
T  15272898 tattttaattgaatctgaattttaccccccctattttaaaactcggaatttta 15272950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 29362252 - 29362161
Alignment:
Q  97 tttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    ||||||||| ||||||||| ||| |||||||||||| |  |||||| ||||| || ||||||| || ||  |||||||||| |||||||||||    
T  29362252 tttaccccc-ctattttaaaactcggaattttaccccctctattttgattgaatcgggattttacccccgttattttaaaattcggaatttta 29362161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 35051795 - 35051851
Alignment:
Q  76 cctattttgattgaatctgaatttaccccctctattttaatacttggaattttaccc 132  Q
    |||||||||| |||||| ||||||  |||| ||||||||| ||||||||||||||||    
T  35051795 cctattttgactgaatcggaattttacccccctattttaaaacttggaattttaccc 35051851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 24814483 - 24814432
Alignment:
Q  138 atttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    ||||| ||||||| | |||||| || ||||||||||||||||||||||||||    
T  24814483 attttgattgattttagatttttccccccctattttaaaactcggaatttta 24814432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 6181200 - 6181134
Alignment:
Q  123 aattttacccgccttatttttattgattctggattttgcctcccctattttaaaactcggaatttta 189  Q
    ||||||| || ||||||||| ||||| |||| ||||| || |  |||||||||||||||||||||||    
T  6181200 aattttatcccccttattttgattgaatctgaattttaccccttctattttaaaactcggaatttta 6181134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 6180632 - 6180701
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaatttaccccctc-tattttaatacttggaattttaccc 132  Q
    |||||||||||  |||||||||||||||| | ||||  |||||| |||||||| ||| ||||||||||||    
T  6180632 aattttaccccctctattttgattgaatcgggattttgcccctcttattttaaaactcggaattttaccc 6180701  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 18051609 - 18051649
Alignment:
Q  138 atttttattgattctggattttgcctcccctattttaaaac 178  Q
    ||||| ||||||||| ||||||||||||| |||||||||||    
T  18051609 attttgattgattcttgattttgcctcccttattttaaaac 18051649  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 32754918 - 32754850
Alignment:
Q  64 aattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttaccc 132  Q
    |||||||||||  |||||||||||||||||| |||| ||| |   ||||||| ||| ||||||||||||    
T  32754918 aattttaccccctctattttgattgaatctggattttccctcctaattttaaaactcggaattttaccc 32754850  T

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Target: scaffold0341 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 71 - 219
Target Start/End: Complemental strand, 6999 - 6851
Alignment:
Q  71 cccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctcccctat 170  Q
    |||| |||||||||||||| | |||||||  |||| ||||||||| ||| |||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  6999 ccccccctattttgattgattttgaattttgcccccctattttaaaactcggaattttaccccctctatttttattgattctggattttgcctcccctat 6900  T
Q  171 tttaaaactcggaattttannnnnnntattttatatttttcaggatttt 219  Q
    |||||||||||||| ||||       |||||||| ||||||||||||||    
T  6899 tttaaaactcggaactttaccccccctattttatgtttttcaggatttt 6851  T

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Target: scaffold0341; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 6349 - 6485
Alignment:
Q  53 ggcttgaatgcaattttacccctcctattttgattgaatctgaattt-accccctctattttaatacttggaattttacccgccttatttttattgattc 151  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| | || | ||||||||| ||| |||||||||||| |  |||||| ||||| ||    
T  6349 ggcttaaatgcaattttacccc-cctattttgattgaatctgaattttatcctccctattttaaaactcggaattttaccccctctattttgattgaatc 6447  T
Q  152 tggattttgcctcccctattttaaaactcggaatttta 189  Q
     |||||||||| ||  ||||||||||||||||||||||    
T  6448 gggattttgcccccgttattttaaaactcggaatttta 6485  T

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Target: scaffold0025 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 22277 - 22435
Alignment:
Q  63 caattttacccctcctattttgattgaatctgaatttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcc 162  Q
    ||||||||||||||||||||||||| ||| |||||||  |||| | ||||||| ||| |||||||||| | | ||||||| ||| | |||||||||| ||    
T  22277 caattttacccctcctattttgattcaatttgaattttgccccccaattttaaaactcggaattttactcccattattttgatttaatctggattttacc 22376  T
Q  163 tcccctattttaaaactcggaattttannnnnnntattttatatttttcaggattttgcc 222  Q
     ||  ||||||||||||||||||||||       ||||||| ||||||||||||||||||    
T  22377 -ccattattttaaaactcggaattttacccaccctattttacatttttcaggattttgcc 22435  T

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Target: scaffold0045 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 75242 - 75371
Alignment:
Q  61 tgcaattttacccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttacccgccttatttttattgattctggatttt 159  Q
    |||||||||||| |||||||||||||||||| |||| |||| |||  ||||||||| | ||||||||||||   |  |||||| ||||| || |||||||    
T  75242 tgcaattttacctctcctattttgattgaatttgaattttatccctcctattttaaaatttggaattttacttcctctattttgattgaatcgggatttt 75341  T
Q  160 gcctcccctattttaaaactcggaatttta 189  Q
    |||  || ||||||||||||||||||||||    
T  75342 gccctccttattttaaaactcggaatttta 75371  T

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Target: scaffold0508 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 189
Target Start/End: Complemental strand, 482 - 364
Alignment:
Q  71 cccctcctattttgattgaatctgaa-tttaccccctctattttaatacttggaattttacccgccttatttttattgattctggattttgcctccccta 169  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| | | | |||||||||||| |  |||||| ||||| |  ||||||| || ||| ||    
T  482 ccccccctattttgattgaatctgaattttaccccctctatttttaaattcggaattttaccccctctattttgattgaattgggattttacc-ccctta 384  T
Q  170 ttttaaaactcggaatttta 189  Q
    ||||||||||||||||||||    
T  383 ttttaaaactcggaatttta 364  T

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Target: scaffold0508; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 286 - 361
Alignment:
Q  137 tatttttattgattctggattttgcctcccctattttaaaactcggaattttannnnnnntattttatatttttcagg 214  Q
    |||||| ||||||| ||||||||||||||  ||||||||||||||||||||||       ||||||||||||||||||    
T  286 tattttgattgattttggattttgcctcc--tattttaaaactcggaattttaccccctctattttatatttttcagg 361  T

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