View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_203 (Length: 212)
Name: NF20665_low_203
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_203 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 46897556 - 46897356
Alignment:
| Q |
3 |
ttaaatgactgagccgctagtggaaggtaaataagaaactactatactcttagacaggtttggatgttgagtttgaagtaagtaaacctgacctgtgcta |
102 |
Q |
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| T |
46897556 |
ttaaatgactgagccgctagtggaaggtaaataagaaactactatactcttagacaggtttggatgttgagtttgaagtaagtaaacctgacctatgcta |
46897457 |
T |
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| Q |
103 |
aaaaagttttttaactggtcgtgggttttcatc----tgcaccacccacccaagtgctttgttttgagatattctcttccttcttgtgactattaatcat |
198 |
Q |
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| T |
46897456 |
aaaaagttttttaactggtcgtgggttttcatctgcatgcaccacccacccaagtgctttgttttgagatattctcttccttcttgtgagtattaatcat |
46897357 |
T |
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| Q |
199 |
g |
199 |
Q |
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| T |
46897356 |
g |
46897356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 41829684 - 41829637
Alignment:
| Q |
144 |
ccacccaagtgctttgttttgagatattctcttccttcttgtgactat |
191 |
Q |
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| T |
41829684 |
ccacccaagtgctttatttttagatattctcttcctttttctgactat |
41829637 |
T |
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