View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_204 (Length: 206)

Name: NF20665_low_204
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_204
NF20665_low_204
[»] chr7 (3 HSPs)
chr7 (31-144)||(25010630-25010743)
chr7 (33-77)||(15892348-15892392)
chr7 (32-72)||(41255691-41255731)
[»] chr2 (3 HSPs)
chr2 (32-139)||(10926044-10926151)
chr2 (35-140)||(26264706-26264812)
chr2 (33-77)||(30213851-30213895)
[»] chr3 (3 HSPs)
chr3 (32-103)||(5158449-5158520)
chr3 (65-118)||(13424649-13424702)
chr3 (33-144)||(25478829-25478940)
[»] chr1 (3 HSPs)
chr1 (32-140)||(10549638-10549750)
chr1 (32-77)||(45909073-45909118)
chr1 (37-98)||(25369724-25369785)
[»] chr5 (3 HSPs)
chr5 (32-140)||(31059277-31059385)
chr5 (32-77)||(25762097-25762142)
chr5 (32-77)||(34832145-34832190)
[»] chr8 (2 HSPs)
chr8 (32-77)||(756293-756338)
chr8 (32-77)||(23255113-23255158)
[»] chr6 (1 HSPs)
chr6 (79-139)||(33873987-33874047)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 7e-51; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 25010743 - 25010630
Alignment:
Q  31 ggtttggatgaaattcatactcactggaagaggttgtggttcgagtatgaaggtgatcctaaggatagaaagacatacatctctcttttactagaatgag 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  25010743 ggtttggatgaaattcatactcactggaagaggttgtggttcgagtataaaggtgatcctaaggatagaaagagagacatctctcttttactagaatgag 25010644  T
Q  131 atttgcttcaagta 144  Q
    ||||||||||||||    
T  25010643 atttgcttcaagta 25010630  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 15892348 - 15892392
Alignment:
Q  33 tttggatgaaattcatactcactggaagaggttgtggttcgagta 77  Q
    ||||||||||||||| ||||| |||||||||||| ||||||||||    
T  15892348 tttggatgaaattcacactcattggaagaggttgaggttcgagta 15892392  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 41255731 - 41255691
Alignment:
Q  32 gtttggatgaaattcatactcactggaagaggttgtggttc 72  Q
    |||||||||||||||| || ||||||||||||||| |||||    
T  41255731 gtttggatgaaattcacacccactggaagaggttgaggttc 41255691  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 10926044 - 10926151
Alignment:
Q  32 gtttggatgaaattcatactcactggaagaggttgtggttcgagtatgaaggtgatcctaaggatagaaagacatacatctctcttttactagaatgaga 131  Q
    ||||||||||||| || ||| | |||||||||||| ||||||||||||| ||||||||||| ||||  |||||| |||||||||| ||||||||||||||    
T  10926044 gtttggatgaaatccacacttattggaagaggttgaggttcgagtatgagggtgatcctaacgataagaagacaaacatctctctgttactagaatgaga 10926143  T
Q  132 tttgcttc 139  Q
    ||||||||    
T  10926144 tttgcttc 10926151  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 26264706 - 26264812
Alignment:
Q  35 tggatgaaattcatactcactggaagaggttgtggttcgagtatgaaggtgatcctaaggatagaaagacatacatctctct-tttactagaatgagatt 133  Q
    |||||||||| || ||||||||||||| |||| ||||  ||||||| ||||||||||||||||| ||| ||||||||||||| ||||| | |||| ||||    
T  26264706 tggatgaaatccacactcactggaagaagttgcggttatagtatgagggtgatcctaaggataggaaggcatacatctctctatttaccataatgggatt 26264805  T
Q  134 tgcttca 140  Q
    || ||||    
T  26264806 tgtttca 26264812  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 30213851 - 30213895
Alignment:
Q  33 tttggatgaaattcatactcactggaagaggttgtggttcgagta 77  Q
    ||||||||||||||| || ||||||||||||||| ||||||||||    
T  30213851 tttggatgaaattcacacccactggaagaggttgaggttcgagta 30213895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 5158520 - 5158449
Alignment:
Q  32 gtttggatgaaattcatactcactggaagaggttgtggttcgagtatgaaggtgatcctaaggatagaaaga 103  Q
    |||||||||||||||| |||||| ||||||| |||| |||||| ||||||||||||||||||||||| ||||    
T  5158520 gtttggatgaaattcacactcaccggaagagattgttgttcgaatatgaaggtgatcctaaggatagcaaga 5158449  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 13424702 - 13424649
Alignment:
Q  65 tgtggttcgagtatgaaggtgatcctaaggatagaaagacatacatctctcttt 118  Q
    |||| ||||||||||||||||||||||| |||||| || ||||||| |||||||    
T  13424702 tgtgattcgagtatgaaggtgatcctaatgatagagaggcatacatatctcttt 13424649  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 25478940 - 25478829
Alignment:
Q  33 tttggatgaaattcatactcactggaagaggttgtggttcgagtatgaaggtgatcctaaggatagaaagacatacatctctcttttactagaatgagat 132  Q
    ||||||| |||| || ||||||  ||| |||||| ||||||||||||| |||||| | |||||||| |||    |||||||||| ||||  ||||| |||    
T  25478940 tttggattaaatccacactcaccagaacaggttgaggttcgagtatgagggtgatacgaaggataggaaggacgacatctctctgttaccggaatgggat 25478841  T
Q  133 ttgcttcaagta 144  Q
    ||| ||||||||    
T  25478840 ttgtttcaagta 25478829  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 10549638 - 10549750
Alignment:
Q  32 gtttggatgaaattcatactcactggaagaggttgtggttcgagtatgaaggtg----atcctaaggatagaaagacatacatctctcttttactagaat 127  Q
    ||||||||||||| || ||||||||||||| |||| ||||||||||||| ||||    ||   |||||||| |||  | |||||||||| |||| |||||    
T  10549638 gtttggatgaaatccacactcactggaagatgttgaggttcgagtatgagggtgatatatatgaaggataggaaggaagacatctctctgttaccagaat 10549737  T
Q  128 gagatttgcttca 140  Q
    |||||||||||||    
T  10549738 gagatttgcttca 10549750  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 45909118 - 45909073
Alignment:
Q  32 gtttggatgaaattcatactcactggaagaggttgtggttcgagta 77  Q
    |||||||||||||||| || ||||||||||||||| ||||||||||    
T  45909118 gtttggatgaaattcacacccactggaagaggttgaggttcgagta 45909073  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 25369785 - 25369724
Alignment:
Q  37 gatgaaattcatactcactggaagaggttgtggttcgagtatgaaggtgatcctaaggatag 98  Q
    ||||||||||| |||||||  |||||||||| ||||||  |||| |||| ||||||||||||    
T  25369785 gatgaaattcaaactcactaaaagaggttgtagttcgataatgatggtggtcctaaggatag 25369724  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 31059385 - 31059277
Alignment:
Q  32 gtttggatgaaattcatactcactggaagaggttgtggttcgagtatgaaggtgatcctaaggatagaaagacatacatctctcttttactagaatgaga 131  Q
    |||||||||| || || ||||||| || ||||||| |||||||||| || ||||||| ||||||||  ||| || |||||||| | |||| | ||| |||    
T  31059385 gtttggatgacatccacactcactagatgaggttgaggttcgagtaagagggtgatcttaaggataagaaggcagacatctctatgttaccataataaga 31059286  T
Q  132 tttgcttca 140  Q
    |||||||||    
T  31059285 tttgcttca 31059277  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 25762097 - 25762142
Alignment:
Q  32 gtttggatgaaattcatactcactggaagaggttgtggttcgagta 77  Q
    |||||||||||||||| || ||||||||||||||| ||||||||||    
T  25762097 gtttggatgaaattcacacccactggaagaggttgaggttcgagta 25762142  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 34832190 - 34832145
Alignment:
Q  32 gtttggatgaaattcatactcactggaagaggttgtggttcgagta 77  Q
    |||||||||||||||| || |||| |||||||||| ||||||||||    
T  34832190 gtttggatgaaattcacacccacttgaagaggttgaggttcgagta 34832145  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 756293 - 756338
Alignment:
Q  32 gtttggatgaaattcatactcactggaagaggttgtggttcgagta 77  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||||    
T  756293 gtttcgatgaaattcacactcactggaagaggttgaggttcgagta 756338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 23255113 - 23255158
Alignment:
Q  32 gtttggatgaaattcatactcactggaagaggttgtggttcgagta 77  Q
    ||||||| |||||||| || ||||||||||||||| ||||||||||    
T  23255113 gtttggaagaaattcacacccactggaagaggttgaggttcgagta 23255158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 33874047 - 33873987
Alignment:
Q  79 gaaggtgatcctaaggatagaaagacatacatctctcttttactagaatgagatttgcttc 139  Q
    ||||||||||||||||||| |||  || |||||| |||||||  |||||| ||||||||||    
T  33874047 gaaggtgatcctaaggataaaaaagcaaacatctttcttttatcagaatgggatttgcttc 33873987  T

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