View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_205 (Length: 205)
Name: NF20665_low_205
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_205 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 56 - 205
Target Start/End: Complemental strand, 37032581 - 37032432
Alignment:
| Q |
56 |
tatgctctctcatatcgaagacgttgactacttctatattctttgaatgtccattttcatttttcattttggataataatggcttattatccaacagtta |
155 |
Q |
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| T |
37032581 |
tatgctctctcatatcgaagacgttgactacttctatattctttgaatgtccattttcatttttcattttggataataatggcttattatccaacagtta |
37032482 |
T |
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| Q |
156 |
ttgatggcttgctgcacatttaagtaacaaatttaagcatcgtttccttt |
205 |
Q |
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| T |
37032481 |
ttgatggcttgctgcacatttaagtaacaaatttaagcatcgtttccttt |
37032432 |
T |
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Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 37032612 - 37032675
Alignment:
| Q |
1 |
agttgaattgtctttattaataaattcacgtatacgtagttatggtatctaaacctatgctctc |
64 |
Q |
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| T |
37032612 |
agttgaattgtctttattaataaattcacgtatacgtagttatggtatctaaacctatgatctc |
37032675 |
T |
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