View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_21 (Length: 520)

Name: NF20665_low_21
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_21
NF20665_low_21
[»] chr8 (3 HSPs)
chr8 (1-507)||(2033094-2033600)
chr8 (343-507)||(2054341-2054504)
chr8 (454-507)||(1950385-1950438)
[»] scaffold0515 (1 HSPs)
scaffold0515 (1-71)||(10097-10167)
[»] scaffold0152 (2 HSPs)
scaffold0152 (1-71)||(27717-27787)
scaffold0152 (1-71)||(36493-36563)
[»] scaffold0055 (6 HSPs)
scaffold0055 (15-71)||(17958-18014)
scaffold0055 (15-71)||(20672-20728)
scaffold0055 (15-71)||(23911-23967)
scaffold0055 (15-71)||(37144-37200)
scaffold0055 (15-71)||(44993-45049)
scaffold0055 (15-71)||(57718-57774)
[»] scaffold0052 (6 HSPs)
scaffold0052 (15-71)||(8900-8956)
scaffold0052 (15-71)||(12102-12158)
scaffold0052 (15-71)||(16563-16619)
scaffold0052 (15-71)||(20915-20971)
scaffold0052 (15-71)||(39857-39913)
scaffold0052 (15-71)||(55322-55378)
[»] chr2 (1 HSPs)
chr2 (327-371)||(42408445-42408489)


Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 2033600 - 2033094
Alignment:
Q  1 aaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgttaagttgttacttcgaatagtccnnnnnn 100  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||          
T  2033600 aaatacgctgcgaagtattgtaagtcgtagaatggccttactgccacgattcactgaaatttagtccttgttaagttgttacttcgactagtccaaaaaa 2033501  T
Q  101 nnnnnngtggctaagtattggagacgatttcgacacattaacgctaaaagttgaaaatatcgtataaatgaatgtaaccacgtgtatgagtgtcgtgtca 200  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2033500 aaaaaagtggctaagtattggagacgatttcgacacattaacgctaaaagttgaaaatatggtataaatgaatgtaaccacgtgtatgagtgtcgtgtca 2033401  T
Q  201 gagaccgacgacacttttaacaatctagagaactaatgaagagaacaaaataacaaacgcgattaaagtttcattagaatgagcaaaatcttcaaaatac 300  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2033400 gagaccgacaacactcttaaccatctagagaactaatgaagagaacaaaataacaaacgcgattaaagtttcattagaatgagcaaaatcttcaaaatac 2033301  T
Q  301 aaatgttactctcaaaatataaagtgaaatataaatagacgtaactacccttatctcaattataacaaaagaaccattacatattatttaaacagacaca 400  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2033300 aaatgttactctcaaaatatatagtgaaatataaatagacgtaactacccttatctcaattataacaaaagaaccattacatattatttaaacagacaca 2033201  T
Q  401 aacacatgtcagacactcaacgcgcatccaatctgaaatttcagtgctacaaatgataataaccaaatttcaaggagcaaataaattttacacatatgca 500  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2033200 aacacatgttagacactcaacgcgcatccaatctgaaatttcggtgctacaaatgataatgaccaaatttcaaggagcaaataaattttacacatatgca 2033101  T
Q  501 taaacat 507  Q
    |||||||    
T  2033100 taaacat 2033094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 343 - 507
Target Start/End: Complemental strand, 2054504 - 2054341
Alignment:
Q  343 aactacccttatctcaattataacaaaagaaccattacatattatttaaacagacacaaacacatgtcagacactcaacgcgcatccaatctgaaatttc 442  Q
    ||||||||||| |  ||||||||||||||  |||||||||||||||||| ||||||||||||  ||| | ||||||||||||||||||||||||||||||    
T  2054504 aactacccttagccgaattataacaaaaggcccattacatattatttaa-cagacacaaacatgtgtaatacactcaacgcgcatccaatctgaaatttc 2054406  T
Q  443 agtgctacaaatgataataaccaaatttcaaggagcaaataaattttacacatatgcataaacat 507  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||| || | |||||||||    
T  2054405 agtgctacaaatgataataacaaaatatcaaggagcaaataaattttacagatgtacataaacat 2054341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 454 - 507
Target Start/End: Original strand, 1950385 - 1950438
Alignment:
Q  454 tgataataaccaaatttcaaggagcaaataaattttacacatatgcataaacat 507  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  1950385 tgataataaccaaatttcaaggagcaaataaattttacacatatacatatacat 1950438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 10097 - 10167
Alignment:
Q  1 aaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 71  Q
    ||||||||  ||| ||||||||||| | ||||||||||| |||||||||| |||||| |||||| ||||||    
T  10097 aaatacgcgacgaggtattgtaagtggcagagtggccttgctgccacgatccactgagatttagcccttgt 10167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27717 - 27787
Alignment:
Q  1 aaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 71  Q
    ||||||||  ||| ||||||||||| | ||||||||||| |||||||||| |||||| |||||| ||||||    
T  27717 aaatacgcgacgaggtattgtaagtggcagagtggccttgctgccacgatccactgagatttagcccttgt 27787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 36493 - 36563
Alignment:
Q  1 aaatacgcagcgaagtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 71  Q
    ||||||||  ||| ||||||||||| | ||||||||||| |||||||||| |||||| |||||| ||||||    
T  36493 aaatacgcgacgaggtattgtaagtggcagagtggccttgctgccacgatccactgagatttagcccttgt 36563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 29; Significance: 0.0000007; HSPs: 6)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 17958 - 18014
Alignment:
Q  15 gtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 71  Q
    ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  17958 gtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 18014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 20728 - 20672
Alignment:
Q  15 gtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 71  Q
    ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  20728 gtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 20672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 23967 - 23911
Alignment:
Q  15 gtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 71  Q
    ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  23967 gtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 23911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 37200 - 37144
Alignment:
Q  15 gtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 71  Q
    ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  37200 gtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 37144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 45049 - 44993
Alignment:
Q  15 gtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 71  Q
    ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  45049 gtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 44993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 57774 - 57718
Alignment:
Q  15 gtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 71  Q
    ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  57774 gtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 57718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 29; Significance: 0.0000007; HSPs: 6)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 8956 - 8900
Alignment:
Q  15 gtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 71  Q
    ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  8956 gtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 8900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 12158 - 12102
Alignment:
Q  15 gtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 71  Q
    ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  12158 gtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 12102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 16563 - 16619
Alignment:
Q  15 gtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 71  Q
    ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  16563 gtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 16619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 20971 - 20915
Alignment:
Q  15 gtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 71  Q
    ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  20971 gtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 20915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 39857 - 39913
Alignment:
Q  15 gtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 71  Q
    ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  39857 gtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 39913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 55378 - 55322
Alignment:
Q  15 gtattgtaagttgtagagtggccttactgccacgattcactgaaatttagtccttgt 71  Q
    ||||||||||| | ||||||||||| |||||||||| |||||| ||| || ||||||    
T  55378 gtattgtaagtggcagagtggccttgctgccacgatccactgagattcagcccttgt 55322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 371
Target Start/End: Complemental strand, 42408489 - 42408445
Alignment:
Q  327 aaatataaatagacgtaactacccttatctcaattataacaaaag 371  Q
    ||||||||| ||||  ||||||||||| |||||||||||||||||    
T  42408489 aaatataaagagactaaactacccttagctcaattataacaaaag 42408445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University