View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_22 (Length: 516)
Name: NF20665_low_22
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 22 - 318
Target Start/End: Original strand, 6370818 - 6371112
Alignment:
| Q |
22 |
ctcggaaccctaaatccgccgccgtaactacaccgtcttcctccgcagcctctgatcgcgatggtactccttctcctcgtggtagccctcgcaccgccat |
121 |
Q |
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| T |
6370818 |
ctcggaaccctaaatccgccgccgtaactacaccgtcttcctccgcagcctctgatcgcgatggtactccttctcctcttggtagccctcgcaccgccat |
6370917 |
T |
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| Q |
122 |
cttcggcaacggtaatttttaattaattgttatcattaaattcatttctctactttcatcaaattctcaatcaattaactaatttattttactcttggaa |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
6370918 |
cttcggcaacggtaatttttaattaattgttatcattaaattcatttctctactttcatcaaattctcaatcaattaactagtttatttaactcttggaa |
6371017 |
T |
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| Q |
222 |
tacattgaatcaattcannnnnnnnnnnnnnnnactggtgtggacatgtcctgtgtatgtactttattgtttattactaatcaagtttgaattaaga |
318 |
Q |
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| T |
6371018 |
tacattgaatcaattca-tttacaattttttttactggtgtggacatgt-ctgtgtatgtgctttattgtttattactaatcaattttgaattaaga |
6371112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 385 - 505
Target Start/End: Original strand, 6371174 - 6371294
Alignment:
| Q |
385 |
gaagatgatgatccacaaacggtgaagacaaggttgagacagtgggcacaggttgttgcttgtgcggttcgtcaaagctgaatgattatgcatgatggtt |
484 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
6371174 |
gaagatgatgatccacaaacggtgaagacaaggttgagacagtgggcacaggttgttgcttgtgcggttcgtcaaagttgaatgattatgcatgatgatt |
6371273 |
T |
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| Q |
485 |
gttgtgatggcaatgatgatg |
505 |
Q |
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| T |
6371274 |
gttgtgatggcaatgatgatg |
6371294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 385 - 504
Target Start/End: Original strand, 33222143 - 33222267
Alignment:
| Q |
385 |
gaagatgatgatccacaaacggtgaagacaaggttgagacagtgggcacaggttgttgcttgtgc--------ggttcgtcaaagctgaatgattatgca |
476 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||| |||||||||||||||| |
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| T |
33222143 |
gaagatgatgatcaacaaacggtgaagacaaggttgatacagtggccacaagttgttgcttgtgccgttgcgaggttcgtc---gctgaatgattatgca |
33222239 |
T |
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| Q |
477 |
tgatggttgttgtgatggcaatgatgat |
504 |
Q |
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||||| |||| |||||| |||||||||| |
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| T |
33222240 |
tgatgattgtggtgatgacaatgatgat |
33222267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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