View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_23 (Length: 510)
Name: NF20665_low_23
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 14611255 - 14611732
Alignment:
| Q |
1 |
gccgatcatctttccataaagtatggacgcgaaccaggtttgctgacatctcctcgtgacccactcgaagctagtactgtagctgaagctgtctctgtga |
100 |
Q |
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| T |
14611255 |
gccgatcatctttccataaagtatggacgggaaccaggtttgctgacatctcctcgtgacccactcgaagctagtactgtagctgaagctgtctctgtga |
14611354 |
T |
|
| Q |
101 |
tttcttgttggtgcgtatctagcccaacacgcccacgtttaaacaaaatagaacatatacataatgcatttaaataaaacaatataaatttcttgctaac |
200 |
Q |
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| T |
14611355 |
tttcttgttggtgcgtatctagcccaacacgcccacgtttaaacaaaatagaacatatacataatgcatttaaataaaacaatataaatttcttgctaac |
14611454 |
T |
|
| Q |
201 |
tttcctattttattaattatctaaagttacataattttattagatcttattaaagatacatcatattacatgtaggtacgaagagaagacagaatgggga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14611455 |
tttcctattttattaattatctaaagttacataattttattagatcttattaaagatacatcatattacatgtaggtacgaagagaagacagaatgggga |
14611554 |
T |
|
| Q |
301 |
gacagagtgggatggatttatggatcagtgacagaggacgtcgttacaggttaccgcatgcacaaccgtggatggcgttctgtatattgcgtgaccaagc |
400 |
Q |
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| T |
14611555 |
gacagagtgggatggatttatggatcagtgacagaggacgtcgttacaggttaccgcatgcacaaccgtggatggcgttctgtatattgcgtgaccaagc |
14611654 |
T |
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| Q |
401 |
gagatgcatttcgcggatcagcaccaattaaccttactgatcgactacaccaggtgctaagatgggccacaggttctg |
478 |
Q |
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| T |
14611655 |
gagatgcatttcgcggatcagcaccaattaaccttactgatcgactacaccaggtgctaagatgggccacaggttctg |
14611732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 264 - 478
Target Start/End: Complemental strand, 14597052 - 14596838
Alignment:
| Q |
264 |
tattacatgtaggtacgaagagaagacagaatggggagacagagtgggatggatttatggatcagtgacagaggacgtcgttacaggttaccgcatgcac |
363 |
Q |
| |
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|||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||||| |||||||||||| |
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| T |
14597052 |
tatttcatgtaggtatgaagacaagacagaatggggagaaagagtgggatggatttatgggtcagtgacagaggatgtggttacagggtaccgcatgcac |
14596953 |
T |
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| Q |
364 |
aaccgtggatggcgttctgtatattgcgtgaccaagcgagatgcatttcgcggatcagcaccaattaaccttactgatcgactacaccaggtgctaagat |
463 |
Q |
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| T |
14596952 |
aatcgtggatggcgttctgtatattgtgtaaccaagcgagatgcatttcgtggatctgcaccaattaatcttactgatcgactacaccaggtgctaagat |
14596853 |
T |
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| Q |
464 |
gggccacaggttctg |
478 |
Q |
| |
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||||||||||||||| |
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| T |
14596852 |
gggccacaggttctg |
14596838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 289 - 476
Target Start/End: Complemental strand, 15417244 - 15417057
Alignment:
| Q |
289 |
acagaatggggagacagagtgggatggatttatggatcagtgacagaggacgtcgttacaggttaccgcatgcacaaccgtggatggcgttctgtatatt |
388 |
Q |
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|||||||||||||| ||| | || ||||||||||||||||||||||| || || || || |||||| | |||||||||||||||||| | || |||||| |
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| T |
15417244 |
acagaatggggagatagaataggttggatttatggatcagtgacagaagatgttgtaactggttacagaatgcacaaccgtggatggagatcgatatatt |
15417145 |
T |
|
| Q |
389 |
gcgtgaccaagcgagatgcatttcgcggatcagcaccaattaaccttactgatcgactacaccaggtgctaagatgggccacaggttc |
476 |
Q |
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|| | || || |||| || || || ||| ||||||| || || || || ||||| ||||||| || ||||||||||| |||||||| |
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| T |
15417144 |
gcatcacaaaaagagacgctttccgtggaacagcacctataaatctcaccgatcgtttacaccaagttctaagatgggcaacaggttc |
15417057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 399
Target Start/End: Complemental strand, 12192859 - 12192735
Alignment:
| Q |
275 |
ggtacgaagagaagacagaatggggagacagagtgggatggatttatggatcagtgacagaggacgtcgttacaggttaccgcatgcacaaccgtggatg |
374 |
Q |
| |
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|||| ||||| ||||| ||||||||||| ||||| ||||||||||| || || || || ||||| || || |||||||| | |||||||| | ||||| |
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| T |
12192859 |
ggtatgaagataagaccgaatggggagatagagttggatggatttacgggtcggtaaccgaggatgttgtgacaggttatagaatgcacaatagaggatg |
12192760 |
T |
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| Q |
375 |
gcgttctgtatattgcgtgaccaag |
399 |
Q |
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| T |
12192759 |
gaggtctgtgtattgtgtgaccaag |
12192735 |
T |
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