View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_25 (Length: 494)

Name: NF20665_low_25
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_25
NF20665_low_25
[»] chr7 (17 HSPs)
chr7 (260-478)||(22718707-22718925)
chr7 (14-168)||(47637716-47637872)
chr7 (15-190)||(22718464-22718637)
chr7 (14-89)||(35891088-35891163)
chr7 (14-92)||(24436286-24436364)
chr7 (33-173)||(1831900-1832040)
chr7 (15-90)||(47638719-47638794)
chr7 (33-92)||(17763415-17763474)
chr7 (33-92)||(17764619-17764678)
chr7 (33-92)||(48170181-48170240)
chr7 (55-93)||(13772582-13772620)
chr7 (33-145)||(34158083-34158195)
chr7 (108-171)||(42509034-42509097)
chr7 (28-90)||(11058087-11058149)
chr7 (109-174)||(48168845-48168910)
chr7 (33-89)||(1830893-1830949)
chr7 (31-92)||(11056811-11056872)
[»] chr1 (20 HSPs)
chr1 (14-176)||(8930248-8930410)
chr1 (14-92)||(30536445-30536523)
chr1 (14-170)||(38741474-38741631)
chr1 (14-100)||(4487610-4487696)
chr1 (33-92)||(9441646-9441705)
chr1 (33-92)||(9442909-9442968)
chr1 (29-88)||(38742256-38742315)
chr1 (33-92)||(52084745-52084804)
chr1 (34-92)||(13917192-13917250)
chr1 (33-92)||(14625448-14625507)
chr1 (33-92)||(14626698-14626757)
chr1 (28-155)||(37269575-37269703)
chr1 (28-86)||(37268907-37268965)
chr1 (57-93)||(37193555-37193591)
chr1 (57-92)||(5560950-5560985)
chr1 (33-92)||(13916169-13916228)
chr1 (33-92)||(37194410-37194468)
chr1 (37-99)||(47839888-47839950)
chr1 (31-100)||(2258018-2258087)
chr1 (14-54)||(4488417-4488457)
[»] chr5 (20 HSPs)
chr5 (14-145)||(33847639-33847770)
chr5 (14-89)||(33751925-33752000)
chr5 (14-88)||(11438421-11438495)
chr5 (14-92)||(37274824-37274902)
chr5 (33-92)||(15061743-15061802)
chr5 (33-92)||(21775540-21775599)
chr5 (33-92)||(41064223-41064282)
chr5 (14-92)||(4061410-4061488)
chr5 (33-92)||(11956218-11956277)
chr5 (33-92)||(11957568-11957627)
chr5 (33-92)||(15060242-15060301)
chr5 (33-92)||(15616419-15616478)
chr5 (33-92)||(30798498-30798557)
chr5 (33-92)||(41065576-41065635)
chr5 (42-92)||(33750996-33751046)
chr5 (33-92)||(21776826-21776885)
chr5 (33-92)||(30796657-30796716)
chr5 (108-170)||(26888453-26888515)
chr5 (46-92)||(33847189-33847235)
chr5 (33-92)||(15615181-15615240)
[»] scaffold0250 (1 HSPs)
scaffold0250 (14-92)||(11469-11547)
[»] chr4 (16 HSPs)
chr4 (14-93)||(2438329-2438408)
chr4 (22-100)||(9410189-9410267)
chr4 (14-100)||(37420837-37420923)
chr4 (14-92)||(51754099-51754177)
chr4 (33-92)||(29249629-29249688)
chr4 (33-92)||(34741313-34741372)
chr4 (14-92)||(9410078-9410156)
chr4 (33-92)||(29248320-29248379)
chr4 (33-92)||(34739967-34740026)
chr4 (15-93)||(37421803-37421881)
chr4 (33-145)||(12566858-12566971)
chr4 (33-173)||(20962190-20962331)
chr4 (33-92)||(20963619-20963678)
chr4 (33-92)||(46427166-46427225)
chr4 (14-91)||(7535328-7535405)
chr4 (14-91)||(7533669-7533746)
[»] chr3 (18 HSPs)
chr3 (14-93)||(15093614-15093693)
chr3 (13-92)||(38842196-38842275)
chr3 (15-89)||(46596176-46596250)
chr3 (33-100)||(2011880-2011947)
chr3 (13-92)||(27315272-27315351)
chr3 (33-92)||(10615353-10615412)
chr3 (33-92)||(10616691-10616750)
chr3 (33-92)||(28208065-28208124)
chr3 (35-89)||(28207059-28207113)
chr3 (14-92)||(37976047-37976124)
chr3 (34-92)||(46610087-46610145)
chr3 (31-92)||(24528480-24528541)
chr3 (33-89)||(27360492-27360548)
chr3 (57-93)||(43930744-43930780)
chr3 (33-92)||(48288281-48288340)
chr3 (31-92)||(22257252-22257313)
chr3 (14-91)||(24842900-24842977)
chr3 (31-92)||(37977427-37977488)
[»] scaffold0227 (1 HSPs)
scaffold0227 (14-92)||(24838-24916)
[»] scaffold0040 (2 HSPs)
scaffold0040 (14-92)||(64581-64659)
scaffold0040 (32-92)||(65961-66021)
[»] chr2 (15 HSPs)
chr2 (33-92)||(38876941-38877000)
chr2 (33-92)||(1904328-1904387)
chr2 (29-92)||(5969807-5969870)
chr2 (33-92)||(21904003-21904062)
chr2 (33-92)||(38876068-38876127)
chr2 (33-92)||(1903009-1903068)
chr2 (33-92)||(38815013-38815072)
chr2 (33-92)||(38937008-38937067)
chr2 (33-92)||(38937428-38937487)
chr2 (34-92)||(38936022-38936080)
chr2 (33-92)||(44366946-44367005)
chr2 (33-92)||(7577696-7577755)
chr2 (33-92)||(38813654-38813713)
chr2 (14-89)||(42235644-42235719)
chr2 (33-85)||(11101179-11101231)
[»] scaffold0210 (1 HSPs)
scaffold0210 (25-93)||(16696-16764)
[»] chr8 (14 HSPs)
chr8 (28-92)||(21397797-21397861)
chr8 (28-92)||(21792290-21792354)
chr8 (33-92)||(5704450-5704509)
chr8 (33-92)||(27164578-27164637)
chr8 (28-90)||(6105636-6105698)
chr8 (33-145)||(39808672-39808785)
chr8 (33-92)||(27163195-27163254)
chr8 (33-92)||(28574617-28574676)
chr8 (33-92)||(39810006-39810065)
chr8 (69-167)||(39682964-39683064)
chr8 (33-92)||(42349039-42349098)
chr8 (64-92)||(5703131-5703159)
chr8 (64-92)||(28561970-28561998)
chr8 (64-92)||(28567468-28567496)
[»] scaffold0112 (2 HSPs)
scaffold0112 (14-92)||(36140-36218)
scaffold0112 (28-91)||(36914-36977)
[»] chr6 (10 HSPs)
chr6 (33-151)||(24235550-24235669)
chr6 (28-89)||(11425683-11425744)
chr6 (33-92)||(22058198-22058257)
chr6 (33-92)||(24234408-24234467)
chr6 (28-93)||(11424835-11424900)
chr6 (33-92)||(22056561-22056620)
chr6 (33-93)||(6000590-6000650)
chr6 (33-92)||(24914517-24914576)
chr6 (33-87)||(5999793-5999847)
chr6 (54-92)||(33485016-33485054)
[»] scaffold0093 (3 HSPs)
scaffold0093 (28-92)||(8962-9026)
scaffold0093 (28-89)||(2741-2802)
scaffold0093 (28-89)||(7364-7425)
[»] scaffold0176 (1 HSPs)
scaffold0176 (33-92)||(206-265)
[»] scaffold0129 (2 HSPs)
scaffold0129 (13-92)||(30803-30882)
scaffold0129 (47-92)||(37325-37370)
[»] scaffold0933 (1 HSPs)
scaffold0933 (29-98)||(2633-2702)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 260 - 478
Target Start/End: Original strand, 22718707 - 22718925
Alignment:
Q  260 gatgcttacctagaggacactaattaggagatcgattaaacaaatggggatcatgtgtggttcatcttcctgacgtgtgagctcaagtgggtgatgtggt 359  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22718707 gatgcttacctagaggacactaattaggagatcgatgaaacaaatggggatcatgtgtggttcatcttcctgacgtgtgagctcaagtgggtgatgtggt 22718806  T
Q  360 aaagagtgagctaaatcgacaatatgccatcatggtgtacctacgatactatgttgatgagacctatttatagtattttcgtgatttggagatggtttat 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22718807 aaagagtgagctaaatcgacaatatgccatcatggtgtacctacgatactatgttgatgagacctatttatagtattttcgtgatttggagatggtttat 22718906  T
Q  460 gagtttaatgttgcccctg 478  Q
    |||||||||||||||||||    
T  22718907 gagtttaatgttgcccctg 22718925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 14 - 168
Target Start/End: Complemental strand, 47637872 - 47637716
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatct-nnnnnnntattt 112  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||        |||||    
T  47637872 cacatgagagccatgcaagagattctgatgagtcataggggtcagggggcaatcatgaagaatctttattttacaaggatataatctaaaaataatattt 47637773  T
Q  113 tacagggtgcaaaatcaaaagtgccgtatattata-gaggataatgcactattaacc 168  Q
    ||||||  | ||||||||||||| | ||||||| | |||| ||| ||||||||||||    
T  47637772 tacaggaggtaaaatcaaaagtgtcttatattacaggaggttaaagcactattaacc 47637716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 22718464 - 22718637
Alignment:
Q  15 acatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatc-tnnnnnnntatttt 113  Q
    ||||||||| ||||||||||||| |||||| ||||| |||| | | ||||||| ||||||||||||||||||||||||| ||||| |       ||||||    
T  22718464 acatgagcgccatgtaagagatt-tgatgaatcatatgggttatgaggtaatcctgaagaatctttattttacaaggatgaaatcttaaaaaaatatttt 22718562  T
Q  114 acagggtgcaaaatcaaaagtgccgtatattatagaggataatgcactattaaccctttatttaatcgaaattattc 190  Q
    |||||||| ||||||||||||| |   ||||| |  || |||  ||||||||||||||||||||||| |||||||||    
T  22718563 acagggtgtaaaatcaaaagtgtc--ctattacaaggggtaaaacactattaaccctttatttaatctaaattattc 22718637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 35891163 - 35891088
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaa 89  Q
    ||||| |||| || ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||    
T  35891163 cacatcagcgccacgtaagagattctgctgagtcataggggtcagggggcaatcctgaagaatctttattttacaa 35891088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 24436286 - 24436364
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||| |||| |||||||||||||||| ||||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  24436286 cacatcagcgccatgtaagagattctgctgagtcatatgggtcagggggcaatcctgaggaatctttattttacaagga 24436364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 1831900 - 1832040
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatct-nnnnnnntattttacagggtgcaaaatcaaa 131  Q
    |||||||| ||||||| |||| | |||||| ||||||||||||||||||||||||||||||| |||||         | ||||||||| | |||||||||    
T  1831900 agattctgctgagtcacagggcttagggggcaatcttgaagaatctttattttacaaggatagaatctaaaaaaaaaaatttacaggg-ggaaaatcaaa 1831998  T
Q  132 agtgccgtatattatagaggataatgcactattaacccttta 173  Q
    |||||| ||||||| || || ||| || ||||||||||||||    
T  1831999 agtgccctatattacagggggtaaagccctattaacccttta 1832040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 47638719 - 47638794
Alignment:
Q  15 acatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaag 90  Q
    |||| |||||||||||||||||| || ||||||||| || ||||| || |||| ||||||||||||||||||||||    
T  47638719 acatcagcgtcatgtaagagattttgttgagtcatatggatcaggaggcaatcctgaagaatctttattttacaag 47638794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 17763474 - 17763415
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  17763474 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 17763415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 17764619 - 17764678
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  17764619 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 17764678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 48170181 - 48170240
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  48170181 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 48170240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 13772582 - 13772620
Alignment:
Q  55 tcagggggtaatcttgaagaatctttattttacaaggat 93  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13772582 tcagggggtaatcttgaagaatctttattttacaaggat 13772620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 34158195 - 34158083
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatctnnnnnnntattttacagggtgcaaaatcaaaa 132  Q
    |||||||| ||||||| |||| || ||||| |||||||||||||||| ||||||||||||   |||||       | |||| ||||| |||||| |||||    
T  34158195 agattctgctgagtcacagggatctgggggcaatcttgaagaatcttcattttacaaggacggaatctaatttttttttttncagggggcaaaaccaaaa 34158096  T
Q  133 gtgccgtatatta 145  Q
    ||||| |||||||    
T  34158095 gtgccctatatta 34158083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 42509034 - 42509097
Alignment:
Q  108 tattttacagggtgcaaaatcaaaagtgccgtatattatagaggataatgcactattaaccctt 171  Q
    |||||||||||| |||||| |||||||||| ||||||| ||||| |||  ||||||||||||||    
T  42509034 tattttacagggggcaaaaccaaaagtgccctatattacagagggtaaaacactattaaccctt 42509097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 11058087 - 11058149
Alignment:
Q  28 gtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaag 90  Q
    ||||||||||||| ||||||||| | || |||||| |||| |||||||| |||||||||||||    
T  11058087 gtaagagattctgctgagtcataagtgtgagggggcaatcatgaagaatttttattttacaag 11058149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 48168910 - 48168845
Alignment:
Q  109 attttacagggtgcaaaatcaaaagtgccgtatattatagaggataatgcactattaaccctttat 174  Q
    ||||||||||| |||||| |||||||||| ||||||| ||||| ||| |  |||||||||||||||    
T  48168910 attttacagggggcaaaaccaaaagtgccctatattacagagggtaaagacctattaaccctttat 48168845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 1830949 - 1830893
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaa 89  Q
    |||||||| | ||||| |||| |||||| | ||||||||||||||||||||||||||    
T  1830949 agattctgctaagtcacagggctcagggagcaatcttgaagaatctttattttacaa 1830893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 11056872 - 11056811
Alignment:
Q  31 agagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||||| |||||||  ||| | |||||| |||| ||||||||||| ||||||||||||    
T  11056872 agagattctgctgagtcaatgggcttagggggcaatcgtgaagaatcttcattttacaagga 11056811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 8930248 - 8930410
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatctnnnnnnntatttt 113  Q
    ||||| |||| || ||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||  ||||||       | ||||    
T  8930248 cacatcagcgccacgtaagagattctgctgagtcataggggtcagggggcaatcctgaagaatctttattttacaaggacgaaatctaattttttttttt 8930347  T
Q  114 acagggtgcaaaatcaaaagtgccgtatattatagaggataatgcactattaaccctttattt 176  Q
    ||||||  ||||| ||||||| || ||||||| || || |||  | |||||||||||||||||    
T  8930348 acaggggacaaaaccaaaagtaccttatattacagggggtaaaactctattaaccctttattt 8930410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 30536523 - 30536445
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||||| ||| || |||||||||||||||||||||| ||||| || |||| ||||||||||||||||||||||||    
T  30536523 cacatgagcgccatatatgagattctgatgagtcatagggatcaggaggcaatcatgaagaatctttattttacaagga 30536445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 38741631 - 38741474
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatct-nnnnnnntattt 112  Q
    ||||| |||| || |||||||||| || |||||||||||||| |||||| |||  ||||||||||||||||||||||||| ||||||        |||||    
T  38741631 cacatcagcgccacgtaagagattttgctgagtcataggggttagggggcaattctgaagaatctttattttacaaggatgaaatctaaaaaaaatattt 38741532  T
Q  113 tacagggtgcaaaatcaaaagtgccgtatattatagaggataatgcactattaaccct 170  Q
    ||||||| |||||| |||||||| | ||||||| || || |||  || ||||||||||    
T  38741531 tacagggggcaaaaccaaaagtgtcttatattacaggggttaaaacattattaaccct 38741474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 4487696 - 4487610
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatct 100  Q
    ||||| ||||||| |||||||||| || |||||||||||| | | |||| |||| |||||||||||||||||||||||| |||||||    
T  4487696 cacattagcgtcacgtaagagattttgctgagtcatagggattatggggcaatcctgaagaatctttattttacaaggacaaaatct 4487610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 9441705 - 9441646
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  9441705 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 9441646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 9442909 - 9442968
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  9442909 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 9442968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 38742256 - 38742315
Alignment:
Q  29 taagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttaca 88  Q
    |||||||||||| |||||||||||||||| |||| |||| ||||||||| ||||||||||    
T  38742256 taagagattctgttgagtcataggggtcaaggggcaatcatgaagaatcgttattttaca 38742315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 52084745 - 52084804
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| | || |||||||| |||||||||||||||||||||||||||||    
T  52084745 agattctgctgagtcacatggctcagggggcaatcttgaagaatctttattttacaagga 52084804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 13917192 - 13917250
Alignment:
Q  34 gattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||||| ||||||| |||| ||||| || |||||||||||||||||||||||||||||    
T  13917192 gattctgctgagtcacagggctcaggaggcaatcttgaagaatctttattttacaagga 13917250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 14625507 - 14625448
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||| ||| |||||||||||||||| ||||||||||||    
T  14625507 agattctgctgagtcacagggctcagagggcaatcttgaagaatcttcattttacaagga 14625448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 14626698 - 14626757
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| |||||||  ||| |||||||| |||||||||||||||| ||||||||||||    
T  14626698 agattctgctgagtcacggggctcagggggcaatcttgaagaatcttcattttacaagga 14626757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 37269575 - 37269703
Alignment:
Q  28 gtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatct-nnnnnnntattttacagggtgcaaaa 126  Q
    ||||||||||||  | ||||||| | ||||||||| |||| ||||||||||||||| ||||||||  ||||||        ||||||||| | |||||||    
T  37269575 gtaagagattctactaagtcataagagtcagggggcaatcctgaagaatctttattgtacaaggacgaaatctaaaaaaaatattttacatgatgcaaaa 37269674  T
Q  127 tcaaaagtgccgtatattatagaggataa 155  Q
    |||||||| || ||||||| || ||||||    
T  37269675 tcaaaagtaccatatattacagtggataa 37269703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 37268965 - 37268907
Alignment:
Q  28 gtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttatttta 86  Q
    |||||||||||||  ||||||||||||| |||||| |||| |||||||| |||||||||    
T  37268965 gtaagagattctgcagagtcataggggtgagggggcaatcctgaagaatttttatttta 37268907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 37193591 - 37193555
Alignment:
Q  57 agggggtaatcttgaagaatctttattttacaaggat 93  Q
    |||||| ||||||||||||||||||||||||||||||    
T  37193591 agggggcaatcttgaagaatctttattttacaaggat 37193555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 92
Target Start/End: Complemental strand, 5560985 - 5560950
Alignment:
Q  57 agggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||| |||||||||||||||||||||||||||||    
T  5560985 agggggcaatcttgaagaatctttattttacaagga 5560950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 13916228 - 13916169
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||| || ||||||| || | |||| ||| |||||||||||||||||||||||||||||    
T  13916228 agattgtgctgagtcacagcgctcagtgggcaatcttgaagaatctttattttacaagga 13916169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 37194410 - 37194468
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| |||||||  ||| |||||||  |||||||||||||||||||||||||||||    
T  37194410 agattctgctgagtcacggggctcaggggc-aatcttgaagaatctttattttacaagga 37194468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 47839888 - 47839950
Alignment:
Q  37 tctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatc 99  Q
    |||||||||||||| |||||||||  || |  ||||||||||| |||||||||||||| ||||    
T  47839888 tctgatgagtcatatgggtcagggcctatttctgaagaatcttgattttacaaggatagaatc 47839950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 2258018 - 2258087
Alignment:
Q  31 agagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatct 100  Q
    |||||||||| |||||||| |||  || |||  |||| | |||||||||||||||||||||||| |||||    
T  2258018 agagattctgctgagtcattgggtacaagggacaatcataaagaatctttattttacaaggatataatct 2258087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 4488417 - 4488457
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcatagggg 54  Q
    |||| ||||| ||||||||||||||| ||||||||||||||    
T  4488417 cacacgagcgccatgtaagagattctaatgagtcatagggg 4488457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 33847639 - 33847770
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatctnnnnnnntatttt 113  Q
    |||||||||| |||||| ||||||||||||||||||||| |||||| |  ||||||||||||| |||||||||||||||  ||||||       ||||||    
T  33847639 cacatgagcgccatgtatgagattctgatgagtcataggagtcaggagacaatcttgaagaatttttattttacaaggacgaaatctaaaaaaatatttt 33847738  T
Q  114 acagggtgcaaaatcaaaagtgccgtatatta 145  Q
    |||  | ||||||||||||||||| |||||||    
T  33847739 acatagagcaaaatcaaaagtgccctatatta 33847770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 33751925 - 33752000
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaa 89  Q
    ||||| || |||||||| ||||||||||||||||||||||| ||||||  ||||||||||||| ||||||||||||    
T  33751925 cacataagtgtcatgtatgagattctgatgagtcatagggggcaggggacaatcttgaagaatttttattttacaa 33752000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 11438495 - 11438421
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttaca 88  Q
    ||||| |||| || ||||||||||||| ||||||||||||||||||||  |||| ||||||||||||||||||||    
T  11438495 cacatcagcgccacgtaagagattctgctgagtcataggggtcaggggacaatcctgaagaatctttattttaca 11438421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 37274902 - 37274824
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||| |||| || ||||||||||||| ||||||||||| || |||||| |||| ||||||||||||||||||||||||    
T  37274902 cacatcagcgccacgtaagagattctgctgagtcataggagttagggggcaatcctgaagaatctttattttacaagga 37274824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 15061743 - 15061802
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  15061743 agattctgctgagtcatagggctcagggggcaatcttgaagaatcttcattttacaagga 15061802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 21775599 - 21775540
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  21775599 agattctgctgagtcatagggttcagggggcaatcttgaagaatcttcattttacaagga 21775540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 41064282 - 41064223
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  41064282 agattctgctgagtcatagggctcagggggcaatcttgaagaatcttcattttacaagga 41064223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 4061410 - 4061488
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||| || |||| |||||||||| || ||||||||| ||||||||||  |||| ||||||||||||||||||||||||    
T  4061410 cacatcagtgtcacgtaagagattttgctgagtcataagggtcaggggacaatcctgaagaatctttattttacaagga 4061488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 11956277 - 11956218
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  11956277 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 11956218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 11957568 - 11957627
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| |||||||||||| |||||||| |||||||||||||| | ||||||||||||    
T  11957568 agattctgctgagtcatagggctcagggggcaatcttgaagaatcgtcattttacaagga 11957627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 15060301 - 15060242
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  15060301 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 15060242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 15616419 - 15616478
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  15616419 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 15616478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 30798498 - 30798557
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  30798498 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 30798557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 41065576 - 41065635
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  41065576 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 41065635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 33751046 - 33750996
Alignment:
Q  42 tgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||||||| |||||||| |||| ||||||||||||||||||||||||    
T  33751046 tgagtcatagggatcagggggcaatcctgaagaatctttattttacaagga 33750996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 21776826 - 21776885
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| | |||||| |||||||||||||||| ||||||||||||    
T  21776826 agattctgctgagtcacagggcttagggggcaatcttgaagaatcttcattttacaagga 21776885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 30796716 - 30796657
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||| | |||||||||||||||| ||||||||||||    
T  30796716 agattctgctgagtcacagggctcagggtgcaatcttgaagaatcttcattttacaagga 30796657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 26888453 - 26888515
Alignment:
Q  108 tattttacagggtgcaaaatcaaaagtgccgtatattatagaggataatgcactattaaccct 170  Q
    |||||||||||| |||||| |||||||| | ||||||||||||| |||  |||||||||||||    
T  26888453 tattttacagggggcaaaaccaaaagtgacctatattatagagggtaaaacactattaaccct 26888515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 33847235 - 33847189
Alignment:
Q  46 tcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| |||||||| |||| ||||||||||||||||||||||||    
T  33847235 tcatagggatcagggggcaatcctgaagaatctttattttacaagga 33847189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 15615240 - 15615181
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| | || |||||||| |||||||||||||||| | ||||||||||    
T  15615240 agattctgctgagtcacatggctcagggggcaatcttgaagaatcttcaatttacaagga 15615181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 11469 - 11547
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||| |||| || ||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  11469 cacatcagcgccacgtaagagattctgctgagtcataggggtcagggggcaatcctgaagaatctttattttacaagga 11547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 2438408 - 2438329
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggat 93  Q
    ||||| |||| || ||||||||||||| ||||||||||||||||||| | |||| |||||||||||||||||||||||||    
T  2438408 cacatcagcgccacgtaagagattctgctgagtcataggggtcagggagcaatcctgaagaatctttattttacaaggat 2438329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 9410189 - 9410267
Alignment:
Q  22 cgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatct 100  Q
    ||||| ||||||||||||  ||||||||||||| ||||||| |||  ||||||||||||||||||||||||| ||||||    
T  9410189 cgtcacgtaagagattctactgagtcataggggacagggggcaatactgaagaatctttattttacaaggatgaaatct 9410267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 37420923 - 37420837
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatct 100  Q
    ||||| |||| ||| ||||||||||||||||||||||||  | |||||| ||   ||||||||||||||||||||||||||||||||    
T  37420923 cacataagcgccatataagagattctgatgagtcataggaattagggggcaagtctgaagaatctttattttacaaggataaaatct 37420837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 51754099 - 51754177
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||| ||||||| |||||||||| || |||||||||||| ||| |||| |||| ||||||||||||||||||||||||    
T  51754099 cacatcagcgtcacgtaagagattttgttgagtcatagggatcatggggcaatcctgaagaatctttattttacaagga 51754177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 29249629 - 29249688
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||||    
T  29249629 agattctgctgagtcacagggctcagggggcaatcttgaagaatctttattttacaagga 29249688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 34741313 - 34741372
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  34741313 agattctgctgagtcatagggctcagggggcaatcttgaagaatcttcattttacaagga 34741372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 9410156 - 9410078
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||| |||| || |||| |||||||| ||||||||||||||||||||| |||  |||||||| |||||||||||||||    
T  9410156 cacatcagcgccacgtaaaagattctgctgagtcataggggtcagggggcaatactgaagaatatttattttacaagga 9410078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 29248379 - 29248320
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  29248379 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 29248320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 34740026 - 34739967
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  34740026 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 34739967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 37421803 - 37421881
Alignment:
Q  15 acatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggat 93  Q
    |||| |||| || ||||||||||||| ||||| ||||||||| | ||| |||| |||| ||||||||||||||||||||    
T  37421803 acatcagcgccacgtaagagattctgctgagttataggggtctgagggcaatcctgaataatctttattttacaaggat 37421881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 12566858 - 12566971
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatct-nnnnnnntattttacagggtgcaaaatcaaa 131  Q
    |||||| | ||||||| |||| |||||||| |||||||||||||||| |||||||||||| | |||||         ||||||||||| |||||| ||||    
T  12566858 agattcagctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacagaatctaagaaacaaattttacagggggcaaaaccaaa 12566957  T
Q  132 agtgccgtatatta 145  Q
    |||||| |||||||    
T  12566958 agtgccctatatta 12566971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 20962331 - 20962190
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatctnnnnnnnta-ttttacagggtgcaaaatcaaa 131  Q
    |||||||| ||||||| |||| ||||| || |||||||||||||||| ||||||||||||   |||||        | |||||||||| |||||| ||||    
T  20962331 agattctgctgagtcacagggctcaggaggcaatcttgaagaatcttcattttacaaggacggaatctaaaaaaaaatttttacagggggcaaaaccaaa 20962232  T
Q  132 agtgccgtatattatagaggataatgcactattaacccttta 173  Q
    |||||| ||||||| || || ||| |  ||||||||||||||    
T  20962231 agtgccatatattacagggggtaaagatctattaacccttta 20962190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 20963619 - 20963678
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||  |||||||||||||||| ||||||||||||    
T  20963619 agattctgctgagtcacagggctcaggggacaatcttgaagaatcttcattttacaagga 20963678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 46427166 - 46427225
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||| |||||||||||||| |||||    
T  46427166 agattctgctgagtcacagggctcagggggcaatcttgatgaatctttattttataagga 46427225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 7535328 - 7535405
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagg 91  Q
    ||||| |||| || ||| ||||||||| |||||||| ||||| ||||| ||||| ||||||||||| ||||| |||||    
T  7535328 cacatcagcgccacgtaggagattctgctgagtcattggggtgaggggctaatcctgaagaatcttcatttttcaagg 7535405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 7533746 - 7533669
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagg 91  Q
    ||||| |||| || ||| ||||||||| |||||||| ||||| |||||  |||| ||||||||||| ||||| |||||    
T  7533746 cacatcagcgccacgtaggagattctgctgagtcattggggtgaggggccaatcctgaagaatcttcatttttcaagg 7533669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 15093614 - 15093693
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggat 93  Q
    ||||| |||| || ||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  15093614 cacatcagcgccacgtaggagattctgttgagtcataggggtcagggggcaatcctgaagaatctttattttacaaggat 15093693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 38842275 - 38842196
Alignment:
Q  13 tcacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||||||||| || ||||||||||||| ||||||||||||||||| ||  | || ||||||||||||||||||||||||    
T  38842275 tcacatgagcgccacgtaagagattctgctgagtcataggggtcagaggacattcctgaagaatctttattttacaagga 38842196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 46596250 - 46596176
Alignment:
Q  15 acatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaa 89  Q
    |||| |||| || ||||||||||||| |||||||||||||||| |||| |||| |||||||||||||||||||||    
T  46596250 acatcagcgccacgtaagagattctgctgagtcataggggtcatggggcaatcctgaagaatctttattttacaa 46596176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 2011880 - 2011947
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatct 100  Q
    |||||||| |||||||||||| |||||||  |||| |||||||||||||||||||||||||| |||||    
T  2011880 agattctgctgagtcatagggttcaggggacaatcctgaagaatctttattttacaaggatagaatct 2011947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 27315351 - 27315272
Alignment:
Q  13 tcacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||| |||||||  |||||||||||| |||||||| ||| |||||||| |||| |||| |||||||||||||||||||    
T  27315351 tcacatcagcgtcacataagagattctgctgagtcattgggatcagggggcaatcctgaaaaatctttattttacaagga 27315272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 10615412 - 10615353
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  10615412 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 10615353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 10616691 - 10616750
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  10616691 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 10616750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 28208065 - 28208124
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||  |||||||| |||||||||||||||||||||||||||||    
T  28208065 agattctgctgagtcacaggactcagggggcaatcttgaagaatctttattttacaagga 28208124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 28207113 - 28207059
Alignment:
Q  35 attctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaa 89  Q
    |||||| ||||||| |||| |||||||| ||||||||||||||||||||||||||    
T  28207113 attctgctgagtcacagggctcagggggcaatcttgaagaatctttattttacaa 28207059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 37976124 - 37976047
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||| |||| || ||||||||||||| |||||||||||||||  | || |||| || |||||||||||||||||||||    
T  37976124 cacatcagcgccacgtaagagattctgctgagtcataggggtc-tgaggcaatcctggagaatctttattttacaagga 37976047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 46610145 - 46610087
Alignment:
Q  34 gattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||||| ||||||| |||| |||||| | |||||||||||||||| ||||||||||||    
T  46610145 gattctgctgagtcacagggctcagggagcaatcttgaagaatcttcattttacaagga 46610087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 24528480 - 24528541
Alignment:
Q  31 agagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||||| |||||||||||| |||||||  |||||| |||||| |||||||||| ||||    
T  24528480 agagattctgctgagtcatagggctcaggggacaatcttaaagaatatttattttacgagga 24528541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 27360548 - 27360492
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaa 89  Q
    ||||| || |||||||||||| |||||||  |||| |||||||||||||||||||||    
T  27360548 agattttgctgagtcatagggctcaggggagaatcctgaagaatctttattttacaa 27360492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 43930744 - 43930780
Alignment:
Q  57 agggggtaatcttgaagaatctttattttacaaggat 93  Q
    |||||| ||||||||||||||||||||||||||||||    
T  43930744 agggggcaatcttgaagaatctttattttacaaggat 43930780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 48288281 - 48288340
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| ||||| ||  ||| ||||||||||||||||||||||||    
T  48288281 agattctgttgagtcacagggctcaggaggcgatcctgaagaatctttattttacaagga 48288340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 22257252 - 22257313
Alignment:
Q  31 agagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||||| || ||| ||| |||| || ||||| |||| ||||||||||||||||||||||||    
T  22257252 agagattatgttgactcaaagggctcggggggaaatcctgaagaatctttattttacaagga 22257313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 24842977 - 24842900
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagg 91  Q
    ||||| |||| || ||| ||||||||| |||||||| ||||| |||||  |||| ||||||||||| ||||| |||||    
T  24842977 cacatcagcgccacgtaggagattctgctgagtcattggggtgaggggccaatcctgaagaatcttcatttttcaagg 24842900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 37977427 - 37977488
Alignment:
Q  31 agagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||||| |||||||| ||| | |||||| |||| |||||| |||| ||||||||||||    
T  37977427 agagattctgctgagtcattgggcttagggggcaatcatgaagattcttcattttacaagga 37977488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 24838 - 24916
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||| |||| || |||||||||| || ||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  24838 cacatcagcgccacgtaagagattttgctgagtcataggggtcagggggcaatcctgaagaatctttattttacaagga 24916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 64659 - 64581
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||| |||| || ||||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||||    
T  64659 cacatcagcgccacgtaagagattctgctgagtcacaggggtcagggggcaatcctgaagaatctttattttacaagga 64581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 65961 - 66021
Alignment:
Q  32 gagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||||||| |||||||  ||| | |||||| |||| ||||||||||| ||||||||||||    
T  65961 gagattctgctgagtcaatgggcttagggggcaatcgtgaagaatcttcattttacaagga 66021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 38876941 - 38877000
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  38876941 agattctgctgagtcatagggctcagggggcaatcttgaagaatctttattttacaagga 38877000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 1904328 - 1904387
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  1904328 agattctgctgagtcatagggctcagggggcaatcttgaagaatcttcattttacaagga 1904387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 5969870 - 5969807
Alignment:
Q  29 taagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||||||| ||||||||||||||||||||  |||| | ||||||||||||||||||||||    
T  5969870 taagagattctgctgagtcataggggtcaggggacaatcattaagaatctttattttacaagga 5969807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 21904062 - 21904003
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||||    
T  21904062 agattctgctgagtcacagggctcagggggcaatcttgaagaatctttattttacaagga 21904003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 38876127 - 38876068
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||||||    
T  38876127 agattctgctgagtcacagggctcagggggcaatcttgaagaatctttattttacaagga 38876068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 1903068 - 1903009
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  1903068 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 1903009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 38815013 - 38815072
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  38815013 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 38815072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 38937067 - 38937008
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  38937067 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 38937008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 38937428 - 38937487
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  38937428 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 38937487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 38936080 - 38936022
Alignment:
Q  34 gattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  38936080 gattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 38936022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 44367005 - 44366946
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| || | |||||||| |||||||||||||||| ||||||||||||    
T  44367005 agattctgctgagtcacagagctcagggggcaatcttgaagaatcttcattttacaagga 44366946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 7577696 - 7577755
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| | || |||||||| |||||||| ||||||| ||||||||||||    
T  7577696 agattctgctgagtcacaaggctcagggggcaatcttgatgaatcttcattttacaagga 7577755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 38813713 - 38813654
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| | |||||| ||||||||||||| || ||||||||||||    
T  38813713 agattctgctgagtcacagggcttagggggcaatcttgaagaatattcattttacaagga 38813654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 42235719 - 42235644
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaa 89  Q
    ||||| |||| || |||||||||||| |||| ||||| ||||||||||  |||  | |||||||||||||||||||    
T  42235719 cacatcagcgccacgtaagagattctaatgaatcataagggtcaggggtcaattctaaagaatctttattttacaa 42235644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 11101231 - 11101179
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttatttt 85  Q
    |||||||| ||||||| |  | |||||||| ||||||||||||||||||||||    
T  11101231 agattctgctgagtcacaacgctcagggggcaatcttgaagaatctttatttt 11101179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 16764 - 16696
Alignment:
Q  25 catgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggat 93  Q
    |||||| ||||||| |||||||||||| |||||||||| |||| |||| ||||||||||||||||||||    
T  16764 catgtaggagattccgatgagtcatagtggtcagggggcaatcctgaataatctttattttacaaggat 16696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 21397797 - 21397861
Alignment:
Q  28 gtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||||||||||| |||||||||||||| |||| | || ||||||||||||||||||||||||||    
T  21397797 gtaagagattctgctgagtcataggggttagggtgcaaccttgaagaatctttattttacaagga 21397861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 21792290 - 21792354
Alignment:
Q  28 gtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||||||||||| |||||||||||||| |||| | || ||||||||||||||||||||||||||    
T  21792290 gtaagagattctgctgagtcataggggttagggtgcaaccttgaagaatctttattttacaagga 21792354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 5704450 - 5704509
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||| ||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  5704450 agatactgctgagtcacagggctcagggggtaatcttgaagaatctttattttacaagga 5704509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 27164578 - 27164637
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  27164578 agattctgctgagtcatagggctcagggggcaatcttgaagaatcttcattttacaagga 27164637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 6105698 - 6105636
Alignment:
Q  28 gtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaag 90  Q
    |||||||||| || |||||||||| |||||||||| |||| ||||||||||||||||||||||    
T  6105698 gtaagagattatgttgagtcatagaggtcagggggcaatcctgaagaatctttattttacaag 6105636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 39808785 - 39808672
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatct-nnnnnnntattttacagggtgcaaaatcaaa 131  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| |||||||||||| | |||||        | |||||||||| |||||| ||||    
T  39808785 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacagaatctaaatttttttttttacagggggcaaaaccaaa 39808686  T
Q  132 agtgccgtatatta 145  Q
    |||||| |||||||    
T  39808685 agtgccctatatta 39808672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 27163254 - 27163195
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  27163254 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 27163195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 28574676 - 28574617
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| ||||||||||||||||||||||| |||||    
T  28574676 agattctgctgagtcacagggttcagggggcaatcttgaagaatctttattttaaaagga 28574617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 39810006 - 39810065
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  39810006 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 39810065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 167
Target Start/End: Original strand, 39682964 - 39683064
Alignment:
Q  69 tgaagaatctttattttacaaggataaaatctnnnnnnn-tattttacagggtgcaaaatcaaaagtgccgtatattatag-aggataatgcactattaa 166  Q
    |||||||||||||||||||||||||  |||||        ||||||| |||| ||||||||||||||||| |||||||||| ||| ||| ||||||||||    
T  39682964 tgaagaatctttattttacaaggatcgaatctaaaaaaaatattttatagggggcaaaatcaaaagtgccctatattatagaagggtaaagcactattaa 39683063  T
Q  167 c 167  Q
    |    
T  39683064 c 39683064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 42349098 - 42349039
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||  |||||||||||||||| ||||||||||||    
T  42349098 agattctgctgagtcacagggttcaggggacaatcttgaagaatcttcattttacaagga 42349039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 92
Target Start/End: Complemental strand, 5703159 - 5703131
Alignment:
Q  64 aatcttgaagaatctttattttacaagga 92  Q
    |||||||||||||||||||||||||||||    
T  5703159 aatcttgaagaatctttattttacaagga 5703131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 92
Target Start/End: Original strand, 28561970 - 28561998
Alignment:
Q  64 aatcttgaagaatctttattttacaagga 92  Q
    |||||||||||||||||||||||||||||    
T  28561970 aatcttgaagaatctttattttacaagga 28561998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 92
Target Start/End: Original strand, 28567468 - 28567496
Alignment:
Q  64 aatcttgaagaatctttattttacaagga 92  Q
    |||||||||||||||||||||||||||||    
T  28567468 aatcttgaagaatctttattttacaagga 28567496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 36218 - 36140
Alignment:
Q  14 cacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||| |||| || |||| |||||||| |||||||||||||| |||||| |||| |||| |||||||||||||||||||    
T  36218 cacatcagcgccacgtaaaagattctgctgagtcataggggttagggggcaatcctgaaaaatctttattttacaagga 36140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 36914 - 36977
Alignment:
Q  28 gtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagg 91  Q
    ||||||||||||| |||||||||||| | |||||| |||| | |||||||  ||||||||||||    
T  36914 gtaagagattctgctgagtcatagggattagggggcaatcctaaagaatcactattttacaagg 36977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 24235550 - 24235669
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaatctnnnnnnnta-ttttacagggtgcaaaatcaaa 131  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| |||||||||||| | |||||        | |||||||||| |||||| ||||    
T  24235550 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaaggacagaatctaaaaataaatttttacagggggcaaaaccaaa 24235649  T
Q  132 agtgccgtatattatagagg 151  Q
    |||||| ||||||| |||||    
T  24235650 agtgccctatattacagagg 24235669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 11425683 - 11425744
Alignment:
Q  28 gtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaa 89  Q
    ||||||||||||| | ||| |||||||| ||||||||||||||| |||||||||||||||||    
T  11425683 gtaagagattctgctaagtgataggggttagggggtaatcttgatgaatctttattttacaa 11425744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 22058198 - 22058257
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| |||||||||||| ||| |||| |||||||||||||||| ||||||||||||    
T  22058198 agattctgctgagtcatagggctcaaggggcaatcttgaagaatcttcattttacaagga 22058257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 24234467 - 24234408
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| ||||||||||||    
T  24234467 agattctgctgagtcacagggctcagggggcaatcttgaagaatcttcattttacaagga 24234408  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 11424900 - 11424835
Alignment:
Q  28 gtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggat 93  Q
    ||||||||||| | ||||||||||| || |||||  |||| |||||||||||||||||||||||||    
T  11424900 gtaagagattcagctgagtcataggagttaggggacaatcctgaagaatctttattttacaaggat 11424835  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 22056620 - 22056561
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| || | |||||||| |||||||||||||||| ||||||||||||    
T  22056620 agattctgctgagtcacagagctcagggggcaatcttgaagaatcttcattttacaagga 22056561  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 6000590 - 6000650
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggat 93  Q
    |||||||| ||||||| ||||   |||||| |||| |||||||||||||||||||||||||    
T  6000590 agattctgctgagtcacagggcatagggggcaatcctgaagaatctttattttacaaggat 6000650  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 24914576 - 24914517
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||  | |||||| |||||||||||||||| ||||||||||||    
T  24914576 agattctgctgagtcacaggacttagggggcaatcttgaagaatcttcattttacaagga 24914517  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 5999847 - 5999793
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttac 87  Q
    |||||||| ||||||| || | |||||||| |||| |||||||||||||||||||    
T  5999847 agattctgctgagtcacagagctcagggggcaatcctgaagaatctttattttac 5999793  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 33485016 - 33485054
Alignment:
Q  54 gtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  33485016 gtcagggggcaatcctgaagaatctttattttacaagga 33485054  T

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Target: scaffold0093 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 8962 - 9026
Alignment:
Q  28 gtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||||| || |||||||||||||| ||| || |||| ||||||||||||||||||||||||    
T  8962 gtaagagattttgctgagtcataggggttaggaggcaatcctgaagaatctttattttacaagga 9026  T

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Target: scaffold0093; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 2802 - 2741
Alignment:
Q  28 gtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaa 89  Q
    ||||||||||||| |||||||||||| | |||||| |||| |||| ||||||||||||||||    
T  2802 gtaagagattctgctgagtcatagggattagggggcaatcctgaataatctttattttacaa 2741  T

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Target: scaffold0093; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 7425 - 7364
Alignment:
Q  28 gtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaa 89  Q
    ||||||||||||| |||||||||||| | |||||| |||| |||| ||||||||||||||||    
T  7425 gtaagagattctgctgagtcatagggattagggggcaatcctgaataatctttattttacaa 7364  T

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Target: scaffold0176 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 206 - 265
Alignment:
Q  33 agattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||||| ||||||| |||| |||||||| |||||||||||||||| |||||| |||||    
T  206 agattctgctgagtcaaagggctcagggggcaatcttgaagaatcttcattttataagga 265  T

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Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 30882 - 30803
Alignment:
Q  13 tcacatgagcgtcatgtaagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    |||||| |||| || ||||||||||||| ||| ||||||| | | ||||| |||  ||||||||||||||||||||||||    
T  30882 tcacatcagcgccacgtaagagattctgctgaatcataggagccggggggaaatactgaagaatctttattttacaagga 30803  T

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Target: scaffold0129; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 37325 - 37370
Alignment:
Q  47 cataggggtcagggggtaatcttgaagaatctttattttacaagga 92  Q
    ||||||||| |||||| |||| ||||||||||||||||||||||||    
T  37325 cataggggttagggggcaatcctgaagaatctttattttacaagga 37370  T

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Target: scaffold0933 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 2633 - 2702
Alignment:
Q  29 taagagattctgatgagtcataggggtcagggggtaatcttgaagaatctttattttacaaggataaaat 98  Q
    |||||||||||| ||||| |||||| ||| | |  |||| |||||||||||||||||||||||| |||||    
T  2633 taagagattctgctgagtgatagggatcatgagacaatcctgaagaatctttattttacaaggacaaaat 2702  T

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