View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_26 (Length: 486)

Name: NF20665_low_26
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_26
NF20665_low_26
[»] chr1 (20 HSPs)
chr1 (11-470)||(48097982-48098445)
chr1 (205-272)||(7333694-7333761)
chr1 (205-272)||(18706918-18706985)
chr1 (205-272)||(23483117-23483184)
chr1 (205-272)||(35614565-35614632)
chr1 (205-272)||(41531010-41531077)
chr1 (205-272)||(52036455-52036522)
chr1 (205-272)||(52687526-52687593)
chr1 (200-272)||(1231551-1231623)
chr1 (200-272)||(2951781-2951853)
chr1 (200-272)||(4266123-4266195)
chr1 (200-272)||(38914162-38914234)
chr1 (205-272)||(19764959-19765026)
chr1 (205-272)||(19768213-19768280)
chr1 (205-272)||(38444380-38444447)
chr1 (205-272)||(48065535-48065602)
chr1 (234-272)||(35613844-35613882)
chr1 (240-274)||(39727762-39727796)
chr1 (244-277)||(29814822-29814855)
chr1 (428-466)||(48057697-48057737)
[»] chr6 (11 HSPs)
chr6 (205-272)||(17202179-17202246)
chr6 (200-272)||(2266510-2266582)
chr6 (205-272)||(3588895-3588962)
chr6 (205-272)||(3591918-3591985)
chr6 (205-272)||(3592643-3592710)
chr6 (205-272)||(10585144-10585211)
chr6 (200-272)||(12597680-12597752)
chr6 (200-272)||(19997406-19997478)
chr6 (200-272)||(33645684-33645756)
chr6 (205-272)||(17594564-17594631)
chr6 (234-272)||(27448426-27448464)
[»] chr4 (17 HSPs)
chr4 (205-272)||(48118947-48119014)
chr4 (205-272)||(31628866-31628933)
chr4 (205-272)||(52098605-52098672)
chr4 (205-272)||(52434371-52434438)
chr4 (200-272)||(12090875-12090947)
chr4 (200-272)||(16918303-16918375)
chr4 (200-272)||(31966384-31966456)
chr4 (205-272)||(45782826-45782893)
chr4 (205-272)||(45977409-45977476)
chr4 (205-272)||(50230128-50230195)
chr4 (234-272)||(14148776-14148814)
chr4 (234-272)||(30825337-30825375)
chr4 (234-272)||(39058767-39058805)
chr4 (234-272)||(47143215-47143253)
chr4 (240-272)||(37591215-37591247)
chr4 (240-272)||(41386908-41386940)
chr4 (240-272)||(44376492-44376524)
[»] chr3 (14 HSPs)
chr3 (205-272)||(31488160-31488227)
chr3 (205-272)||(49477955-49478022)
chr3 (200-272)||(3898164-3898236)
chr3 (200-272)||(21098045-21098117)
chr3 (200-272)||(34121097-34121169)
chr3 (200-272)||(38654343-38654415)
chr3 (200-272)||(49672304-49672376)
chr3 (205-272)||(20670997-20671064)
chr3 (234-272)||(12263975-12264013)
chr3 (234-272)||(26052494-26052532)
chr3 (234-272)||(55042003-55042041)
chr3 (235-272)||(49506751-49506788)
chr3 (240-272)||(39146229-39146261)
chr3 (200-272)||(43364026-43364098)
[»] chr8 (23 HSPs)
chr8 (200-272)||(18175123-18175195)
chr8 (205-272)||(11724937-11725004)
chr8 (205-272)||(18568648-18568715)
chr8 (205-272)||(19412583-19412650)
chr8 (205-272)||(39997411-39997478)
chr8 (200-272)||(6299435-6299507)
chr8 (200-272)||(10477679-10477751)
chr8 (200-272)||(18997442-18997514)
chr8 (200-272)||(30474298-30474370)
chr8 (205-272)||(11142212-11142279)
chr8 (205-272)||(18210994-18211061)
chr8 (206-277)||(23353980-23354051)
chr8 (245-280)||(32976636-32976671)
chr8 (205-272)||(35122730-35122797)
chr8 (205-272)||(39257183-39257250)
chr8 (205-272)||(40026578-40026645)
chr8 (234-272)||(996230-996268)
chr8 (234-272)||(24408655-24408693)
chr8 (234-272)||(32111276-32111314)
chr8 (234-272)||(44836394-44836432)
chr8 (234-272)||(44836684-44836722)
chr8 (240-272)||(25875712-25875744)
chr8 (200-272)||(44832602-44832674)
[»] chr7 (15 HSPs)
chr7 (205-272)||(7889795-7889862)
chr7 (205-272)||(15110075-15110142)
chr7 (205-272)||(23486953-23487020)
chr7 (205-272)||(43933958-43934025)
chr7 (200-272)||(3841057-3841129)
chr7 (200-272)||(17178653-17178725)
chr7 (200-272)||(21804987-21805059)
chr7 (200-272)||(27138943-27139015)
chr7 (200-272)||(31096441-31096513)
chr7 (200-272)||(33917362-33917434)
chr7 (200-272)||(42242569-42242641)
chr7 (245-274)||(13785960-13785989)
chr7 (207-272)||(24923831-24923896)
chr7 (240-272)||(21753904-21753936)
chr7 (240-272)||(27903827-27903859)
[»] chr5 (21 HSPs)
chr5 (205-272)||(6940913-6940980)
chr5 (205-272)||(29275371-29275438)
chr5 (200-272)||(2399355-2399427)
chr5 (200-272)||(10729857-10729929)
chr5 (200-272)||(20874430-20874502)
chr5 (208-272)||(24223579-24223643)
chr5 (200-272)||(33570723-33570795)
chr5 (200-272)||(34110392-34110464)
chr5 (200-272)||(38247280-38247352)
chr5 (200-272)||(40176859-40176931)
chr5 (205-272)||(1395738-1395805)
chr5 (205-272)||(5478946-5479013)
chr5 (205-272)||(16526722-16526789)
chr5 (205-272)||(27647676-27647743)
chr5 (234-272)||(17373579-17373617)
chr5 (234-272)||(34107753-34107791)
chr5 (240-272)||(14141522-14141554)
chr5 (236-272)||(20655459-20655495)
chr5 (240-272)||(25099650-25099682)
chr5 (240-272)||(25158739-25158771)
chr5 (240-272)||(33375546-33375578)
[»] chr2 (12 HSPs)
chr2 (205-272)||(31423755-31423822)
chr2 (205-272)||(36279868-36279935)
chr2 (205-272)||(42054999-42055066)
chr2 (206-272)||(16214573-16214639)
chr2 (200-272)||(6120293-6120365)
chr2 (200-272)||(18351293-18351365)
chr2 (200-272)||(41662978-41663050)
chr2 (200-272)||(41664252-41664324)
chr2 (200-272)||(42441702-42441774)
chr2 (200-272)||(44901824-44901896)
chr2 (205-272)||(34008126-34008193)
chr2 (234-272)||(19597071-19597109)
[»] scaffold0003 (2 HSPs)
scaffold0003 (234-272)||(38312-38350)
scaffold0003 (234-272)||(38894-38932)


Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 11 - 470
Target Start/End: Complemental strand, 48098445 - 48097982
Alignment:
Q  11 catcatcagctgagaactcattttataatctgaaacaaataaaactcaacaaagtaatatcagcaaggtgaaaatagtaatattgattgaatatatatct 110  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48098445 catcatcagctgagaactcgttttataatctgaaacaaataaaactcaacaaagtaatatcagcaaggtgaaaatagtaatattgattgaatatatatct 48098346  T
Q  111 ttcctacctaatcaacaattaaccggataaaactacaaaataaagtagaaagagattgaaaatgatgcttagcacgggttttttgttagtta-ctacaaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||| |||||||    
T  48098345 ttcctacctaatcaacaattaaccggataaaactacaaaataaagtagaaagagattgaaaattatgcttaacacgggttttttgctagttaactacaaa 48098246  T
Q  210 atgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaagtgcattcaaatagtattcagtgatgagcaaaacttaa 309  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48098245 atgcagcagagttttttaatacaaataaataggtcgaagaaacatttcaacaagcagttaaagtgcattcaaatagtattcagtgatgagcaaaacttaa 48098146  T
Q  310 cagtatagtagaatagcatattaagattaaaatgttggttcggttgagatagaagagtgatttggaattaattaat-agagatgtgtaacggtgtaatga 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  48098145 cagtatagtagaatagcatattaagattaaaatgttggttcggttgagatagaagagtgatttggaattaattaataaaagatgtgtaacggtgtaatga 48098046  T
Q  409 gtactatattgaagcaaacgaagaagaagaat--tgtgagggaatggaattggagaagatgaag 470  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  48098045 gtactatattgaagcaaacgaagaagaagaattatgtgagggaatggaattggagaagatgaag 48097982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 7333694 - 7333761
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||| |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  7333694 acaaaatgcaccagaatttttcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 7333761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 18706985 - 18706918
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  18706985 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 18706918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 23483184 - 23483117
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  23483184 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 23483117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 35614565 - 35614632
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  35614565 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 35614632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 41531077 - 41531010
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  41531077 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 41531010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 52036522 - 52036455
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||||| || |||||||||  |||| | ||||| |||| ||||||||||||||||||||||||||||    
T  52036522 acaaaatacatcagaattttgcaatatatataaacaggtggaagaaacatttcaacaaacagttaaag 52036455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 52687593 - 52687526
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  52687593 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 52687526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 1231551 - 1231623
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  1231551 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 1231623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 2951853 - 2951781
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  2951853 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 2951781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 4266123 - 4266195
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  4266123 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 4266195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 38914234 - 38914162
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  38914234 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 38914162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 19765026 - 19764959
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||||||||  ||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  19765026 acaaaatgcactagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 19764959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 19768213 - 19768280
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||||||||  ||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  19768213 acaaaatgcactagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 19768280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 38444380 - 38444447
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||| ||||||||||||||||||||    
T  38444380 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaatatttcaacaaacagttaaag 38444447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 48065602 - 48065535
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||||| || |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  48065602 acaaaatacaccagaattttaaaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 48065535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 35613844 - 35613882
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  35613844 ataaacaggtggaagaaacatttcaacaaacagttaaag 35613882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 39727762 - 39727796
Alignment:
Q  240 aggtcgaagaaacatttcaacaaacagttaaagtg 274  Q
    |||| ||||||||||||||||||||||||||||||    
T  39727762 aggtggaagaaacatttcaacaaacagttaaagtg 39727796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 29814822 - 29814855
Alignment:
Q  244 cgaagaaacatttcaacaaacagttaaagtgcat 277  Q
    ||||||||||||||||||||||||||||| ||||    
T  29814822 cgaagaaacatttcaacaaacagttaaagggcat 29814855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 466
Target Start/End: Complemental strand, 48057737 - 48057697
Alignment:
Q  428 gaagaagaagaat--tgtgagggaatggaattggagaagat 466  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  48057737 gaagaagaagaatattgtgagggaatggaattggagaagat 48057697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 17202179 - 17202246
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | |||||||||| ||||||||||||||||||||||||||||    
T  17202179 acaaaatgcaccagaattttgcaatctatataaataggtggaagaaacatttcaacaaacagttaaag 17202246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 2266510 - 2266582
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | |||||||||| ||||||||||||||||||||||||||||    
T  2266510 ttaccacaaaatgcacctgaattttgcaatctatataaataggtggaagaaacatttcaacaaacagttaaag 2266582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 3588895 - 3588962
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  3588895 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 3588962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 3591918 - 3591985
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  3591918 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 3591985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 3592643 - 3592710
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  3592643 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 3592710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 10585211 - 10585144
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  10585211 acaaaatgcaccagaattttgcaatctacataaacaggtggaagaaacatttcaacaaacagttaaag 10585144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 12597752 - 12597680
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  12597752 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 12597680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 19997406 - 19997478
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  19997406 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 19997478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 33645684 - 33645756
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  33645684 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 33645756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 17594564 - 17594631
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||| ||||||||||||||||||||||||    
T  17594564 acaaaatgcaccagaattttgcaatctatataaacaggtggaaaaaacatttcaacaaacagttaaag 17594631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 27448426 - 27448464
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  27448426 ataaacaggtggaagaaacatttcaacaaacagttaaag 27448464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 48119014 - 48118947
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| ||||||||| ||||  | |||||||||| ||||||||||||||||||||| ||||||    
T  48119014 acaaaatgcaccagaattttgtaatctatataaataggtggaagaaacatttcaacaaacatttaaag 48118947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 31628933 - 31628866
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  31628933 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 31628866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 52098672 - 52098605
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  52098672 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 52098605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 52434371 - 52434438
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  52434371 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 52434438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 12090947 - 12090875
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  12090947 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 12090875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 16918375 - 16918303
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  16918375 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 16918303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 31966456 - 31966384
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  31966456 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 31966384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 45782893 - 45782826
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||| ||||||||||||||||||||||    
T  45782893 acaaaatgcaccagaattttgcaatctatataaacaggtggaagagacatttcaacaaacagttaaag 45782826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 45977476 - 45977409
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| || | ||||||||||||||||||||||||||||    
T  45977476 acaaaatgcaccagaattttgcaatctatataaacagatggaagaaacatttcaacaaacagttaaag 45977409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 50230195 - 50230128
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| ||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  50230195 acaacatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 50230128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 14148814 - 14148776
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  14148814 ataaacaggtggaagaaacatttcaacaaacagttaaag 14148776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 30825375 - 30825337
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  30825375 ataaacaggtggaagaaacatttcaacaaacagttaaag 30825337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 39058805 - 39058767
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  39058805 ataaacaggtggaagaaacatttcaacaaacagttaaag 39058767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 47143253 - 47143215
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  47143253 ataaacaggtggaagaaacatttcaacaaacagttaaag 47143215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 37591247 - 37591215
Alignment:
Q  240 aggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| ||||||||||||||||||||||||||||    
T  37591247 aggtggaagaaacatttcaacaaacagttaaag 37591215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 41386908 - 41386940
Alignment:
Q  240 aggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| ||||||||||||||||||||||||||||    
T  41386908 aggtggaagaaacatttcaacaaacagttaaag 41386940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 44376524 - 44376492
Alignment:
Q  240 aggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| ||||||||||||||||||||||||||||    
T  44376524 aggtggaagaaacatttcaacaaacagttaaag 44376492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 31488160 - 31488227
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||| |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  31488160 acaaaatgcaccagaatttttcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 31488227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 49477955 - 49478022
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  49477955 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 49478022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 3898164 - 3898236
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  3898164 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 3898236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 21098045 - 21098117
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  21098045 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 21098117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 34121097 - 34121169
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  34121097 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 34121169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 38654415 - 38654343
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  38654415 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 38654343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 49672304 - 49672376
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  49672304 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 49672376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 20670997 - 20671064
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  20670997 acaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 20671064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 12263975 - 12264013
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  12263975 ataaacaggtggaagaaacatttcaacaaacagttaaag 12264013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 26052532 - 26052494
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  26052532 ataaacaggtggaagaaacatttcaacaaacagttaaag 26052494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 55042041 - 55042003
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  55042041 ataaacaggtggaagaaacatttcaacaaacagttaaag 55042003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 49506788 - 49506751
Alignment:
Q  235 taaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  49506788 taaacaggtggaagaaacatttcaacaaacagttaaag 49506751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 39146229 - 39146261
Alignment:
Q  240 aggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| ||||||||||||||||||||||||||||    
T  39146229 aggtggaagaaacatttcaacaaacagttaaag 39146261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 43364098 - 43364026
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||| ||||||||    
T  43364098 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaatagttaaag 43364026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 18175123 - 18175195
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||| | ||||| |||| ||||||||||||||||||||||||||||    
T  18175123 ttaccacaaaatgcacctgaattttgcaatatatataaacaggtggaagaaacatttcaacaaacagttaaag 18175195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 11724937 - 11725004
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  11724937 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 11725004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 18568648 - 18568715
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  18568648 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 18568715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 19412583 - 19412650
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  19412583 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 19412650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 39997411 - 39997478
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  39997411 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 39997478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 6299507 - 6299435
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  6299507 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 6299435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 10477679 - 10477751
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  10477679 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 10477751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 18997442 - 18997514
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  18997442 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 18997514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 30474370 - 30474298
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  30474370 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 30474298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 11142212 - 11142279
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  11142212 acaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 11142279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 18211061 - 18210994
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||| ||||||||||||||||||||||||    
T  18211061 acaaaatgcatcagaattttgcaatctatataaacaggtggaataaacatttcaacaaacagttaaag 18210994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 277
Target Start/End: Complemental strand, 23354051 - 23353980
Alignment:
Q  206 caaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaagtgcat 277  Q
    ||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||| |||||| ||||    
T  23354051 caaaatgcatcagaattttgcaatctatataaaaaggtggaagaaacatttcaacaaacatttaaagggcat 23353980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 280
Target Start/End: Complemental strand, 32976671 - 32976636
Alignment:
Q  245 gaagaaacatttcaacaaacagttaaagtgcattca 280  Q
    ||||||||||||||||||||||||||||| ||||||    
T  32976671 gaagaaacatttcaacaaacagttaaagtacattca 32976636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 35122797 - 35122730
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| ||||| |||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  35122797 acaaaatgcaccagaaatttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 35122730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 39257183 - 39257250
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||| ||||||||||||||||||||||||    
T  39257183 acaaaatgcaccagaattttgcaatctatataaacaggtggaaaaaacatttcaacaaacagttaaag 39257250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 40026578 - 40026645
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| ||||  |||||||||||||||||||||||||||    
T  40026578 acaaaatgcaccagaattttgcaatctatataaacaggtgaaagaaacatttcaacaaacagttaaag 40026645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 996268 - 996230
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  996268 ataaacaggtggaagaaacatttcaacaaacagttaaag 996230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 24408655 - 24408693
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  24408655 ataaacaggtggaagaaacatttcaacaaacagttaaag 24408693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 32111314 - 32111276
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  32111314 ataaacaggtggaagaaacatttcaacaaacagttaaag 32111276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 44836394 - 44836432
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  44836394 ataaacaggtggaagaaacatttcaacaaacagttaaag 44836432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 44836684 - 44836722
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  44836684 ataaacaggtggaagaaacatttcaacaaacagttaaag 44836722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 25875744 - 25875712
Alignment:
Q  240 aggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| ||||||||||||||||||||||||||||    
T  25875744 aggtggaagaaacatttcaacaaacagttaaag 25875712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 44832674 - 44832602
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| | || ||||||||||||||||||||||||||||    
T  44832674 ttaccacaaaatgcacctgaattttgcaatctatataaacaagtggaagaaacatttcaacaaacagttaaag 44832602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 7889862 - 7889795
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  7889862 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 7889795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 15110142 - 15110075
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  15110142 acaaaatgcaccagaattttgcaatctatataaacaggtagaagaaacatttcaacaaacagttaaag 15110075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 23486953 - 23487020
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  23486953 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 23487020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 43934025 - 43933958
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  43934025 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 43933958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 3841129 - 3841057
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  3841129 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 3841057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 17178725 - 17178653
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  17178725 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 17178653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 21805059 - 21804987
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  21805059 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 21804987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 27139015 - 27138943
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  27139015 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 27138943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 31096441 - 31096513
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  31096441 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 31096513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 33917434 - 33917362
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  33917434 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 33917362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 42242641 - 42242569
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  42242641 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 42242569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 274
Target Start/End: Original strand, 13785960 - 13785989
Alignment:
Q  245 gaagaaacatttcaacaaacagttaaagtg 274  Q
    ||||||||||||||||||||||||||||||    
T  13785960 gaagaaacatttcaacaaacagttaaagtg 13785989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 24923831 - 24923896
Alignment:
Q  207 aaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||| |||||||||  |||  | ||||| |||| ||| ||||||||||||||||||||||||    
T  24923831 aaaatgcaccagaattttgcaatctatataaacaggtggaacaaacatttcaacaaacagttaaag 24923896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 21753936 - 21753904
Alignment:
Q  240 aggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| ||||||||||||||||||||||||||||    
T  21753936 aggtggaagaaacatttcaacaaacagttaaag 21753904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 27903859 - 27903827
Alignment:
Q  240 aggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| ||||||||||||||||||||||||||||    
T  27903859 aggtggaagaaacatttcaacaaacagttaaag 27903827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 6940980 - 6940913
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  6940980 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 6940913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 29275371 - 29275438
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  29275371 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 29275438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 2399427 - 2399355
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  2399427 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 2399355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 10729929 - 10729857
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  10729929 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 10729857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 20874430 - 20874502
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  20874430 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 20874502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 24223643 - 24223579
Alignment:
Q  208 aaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  24223643 aaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 24223579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 33570795 - 33570723
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  33570795 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 33570723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 34110392 - 34110464
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  34110392 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 34110464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 38247352 - 38247280
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  38247352 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 38247280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 40176859 - 40176931
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  40176859 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 40176931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 1395738 - 1395805
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  1395738 acaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 1395805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 5478946 - 5479013
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| |||||||||||||| |||||||||||||    
T  5478946 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcatcaaacagttaaag 5479013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 16526789 - 16526722
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  16526789 acaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 16526722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 27647676 - 27647743
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| |||||||||||||||||||||| |||||    
T  27647676 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagctaaag 27647743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 17373617 - 17373579
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  17373617 ataaacaggtggaagaaacatttcaacaaacagttaaag 17373579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 34107791 - 34107753
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  34107791 ataaacaggtggaagaaacatttcaacaaacagttaaag 34107753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 14141554 - 14141522
Alignment:
Q  240 aggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| ||||||||||||||||||||||||||||    
T  14141554 aggtggaagaaacatttcaacaaacagttaaag 14141522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 20655495 - 20655459
Alignment:
Q  236 aaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||  ||||||||||||||||||||||||||||    
T  20655495 aaatagggggaagaaacatttcaacaaacagttaaag 20655459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 25099682 - 25099650
Alignment:
Q  240 aggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| ||||||||||||||||||||||||||||    
T  25099682 aggtggaagaaacatttcaacaaacagttaaag 25099650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 25158771 - 25158739
Alignment:
Q  240 aggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| ||||||||||||||||||||||||||||    
T  25158771 aggtggaagaaacatttcaacaaacagttaaag 25158739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 33375546 - 33375578
Alignment:
Q  240 aggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| ||||||||||||||||||||||||||||    
T  33375546 aggtggaagaaacatttcaacaaacagttaaag 33375578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 31423755 - 31423822
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  31423755 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 31423822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 36279935 - 36279868
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  36279935 acaaaatgcaccagaattttacaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 36279868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 42054999 - 42055066
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  42054999 acaaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 42055066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 16214573 - 16214639
Alignment:
Q  206 caaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||||||| |||||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  16214573 caaaatgcaccagaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 16214639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 6120293 - 6120365
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  6120293 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 6120365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 18351293 - 18351365
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  18351293 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 18351365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 41662978 - 41663050
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  41662978 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 41663050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 41664252 - 41664324
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  41664252 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 41664324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 42441702 - 42441774
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  42441702 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 42441774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 44901824 - 44901896
Alignment:
Q  200 ttactacaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||| |||||||||| | |||||||  |||  | ||||| |||| ||||||||||||||||||||||||||||    
T  44901824 ttaccacaaaatgcacctgaattttgcaatctatataaacaggtggaagaaacatttcaacaaacagttaaag 44901896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 34008193 - 34008126
Alignment:
Q  205 acaaaatgcagcagaattttttaatacaaataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    |||||||||| |||||||||  |||  | ||||| | || ||||||||||||||||||||||||||||    
T  34008193 acaaaatgcaccagaattttgcaatctatataaacaagtggaagaaacatttcaacaaacagttaaag 34008126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 19597109 - 19597071
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  19597109 ataaacaggtggaagaaacatttcaacaaacagttaaag 19597071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 38350 - 38312
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  38350 ataaacaggtggaagaaacatttcaacaaacagttaaag 38312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 38932 - 38894
Alignment:
Q  234 ataaataggtcgaagaaacatttcaacaaacagttaaag 272  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  38932 ataaacaggtggaagaaacatttcaacaaacagttaaag 38894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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