View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_27 (Length: 478)
Name: NF20665_low_27
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 79 - 464
Target Start/End: Original strand, 39439672 - 39440057
Alignment:
| Q |
79 |
gtgtgatttgcggaacaacgaagtttatgatgttggagaatgaggaatttggaagaatagagaggtttgatagaaattggggatgtgcgaataggaaaag |
178 |
Q |
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| T |
39439672 |
gtgtgatttgcggaacaacgaagtttatgatgatggagaatgaggaatttggaagaatagagaggtttgatagaaattggggatgtgcgaataggaaaag |
39439771 |
T |
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| Q |
179 |
cgaggttagaggattgaattcttgtggttttggtgtgaagtgaatggaacttggtagaagggattgagtatgaaattgcttccattttcgggagttgaaa |
278 |
Q |
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| T |
39439772 |
cgaggttagaggattgaattcttgtggttttggtgtgaagtgaatggaacttggtagaagggattgagtatgaaattgcttccattttcgggagttgaaa |
39439871 |
T |
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| Q |
279 |
ttcgaagacgagtttcatgccattattataaaagttgaatgttgaaatgagagaatcagagttaattaggacatatatgacctattattgtggggcagtt |
378 |
Q |
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| T |
39439872 |
ttcgaagacgagtttcatgccattattataaaagttgaatgttgaaatgagagaatcagagtttattaggacatatatgacctattattgtggggcagtt |
39439971 |
T |
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| Q |
379 |
gtttgttttttcttgttacgggtcattacagtggaggactatagagactccagggagtgaaaatgagccattcagttagttgttac |
464 |
Q |
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| T |
39439972 |
gtttgttttttcttgttacgggtcattacagtggaggactatagagactccagggagtgaaaatgagccattcagttagttgttac |
39440057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 266
Target Start/End: Complemental strand, 41448102 - 41447973
Alignment:
| Q |
143 |
gtttgatagaaattggggatgtgcgaataggaaaagcgaggttagaggattgaattcttgtggttttgg------tgtgaagtgaatggaacttggtaga |
236 |
Q |
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| T |
41448102 |
gtttgattgaaattggggaagggagaagaggacaagtgaagttggaagattggattcttgtggttttggtgtggatgtgaagtgaatggaatttggtaaa |
41448003 |
T |
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| Q |
237 |
agggattgagtatgaaattgcttccatttt |
266 |
Q |
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| T |
41448002 |
gggaatcgagtacgaaattgcttccgtttt |
41447973 |
T |
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