View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_28 (Length: 476)
Name: NF20665_low_28
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 10 - 460
Target Start/End: Complemental strand, 14795326 - 14794876
Alignment:
| Q |
10 |
ataatactctcttgtaactccatcatgcacctggcctatactttccttgaggaggaccaagctttatttcaaaactcttcatatcatggtgaccttgagc |
109 |
Q |
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| T |
14795326 |
ataatactctcttgtaactccattatgcacctggcctatactttccttgaggaggaccaagctttatttcaaaactcttcatatcatggtgaccttgagc |
14795227 |
T |
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| Q |
110 |
aactggcttctgtactctaacacctccatgtccattattttttgaaaagccaccatgtccattattttttggaaagcctccatgtccattattcataggc |
209 |
Q |
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| T |
14795226 |
aactggcttctgtactctaacacctccatgtccattattttttgaaaagccaccatgtccattattttttggaaagcctccatgtccattattcataggc |
14795127 |
T |
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| Q |
210 |
ttagaagctgcaatctttttgtcaaatccaaattcaatatcaacttcttttggacgtgagtgttggtgattctgctgcttttgatgcttaactggtttct |
309 |
Q |
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| T |
14795126 |
ttagaagctgcaatctttttgtcaaatccaaattcaatatcaacttcttttggacgtgagtgttggtgattctgctgcttttgatgcttaactggtttct |
14795027 |
T |
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| Q |
310 |
gactgtggcttttgccgttgccgcggcggctgcaaaaccttccaagacaacaagcaacagcagagattactattatgatggctaagacaacaaatactga |
409 |
Q |
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| T |
14795026 |
gactgtggcttttgccgttgccgcggcggctgcaaaaccttccaagacaacaagcaacagcagagattactattatgatggctaagacaacaaatactga |
14794927 |
T |
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| Q |
410 |
cccaaatgatccattggatgaatggtggtcaggttcaggtggtgcatattg |
460 |
Q |
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| T |
14794926 |
cccaaatgatccattggatgaatggtggtcaggttcaggtggtgcatattg |
14794876 |
T |
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