View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_29 (Length: 471)
Name: NF20665_low_29
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 37789528 - 37789071
Alignment:
| Q |
1 |
gatgaaggtaatgcctggagtaaggttgaacattgcgaacataaatgttgatgaggttaaagtcatgccttcggcaaacatattcataaataaacttccc |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37789528 |
gatgaaggtaatgcctggagtaaggttgaacatagcgaacataaatgttgatgaggttaaagtcatgccttcggcaaacatattcataaataaacttccc |
37789429 |
T |
|
| Q |
101 |
ctgaaataatacatgacaaattaagagtgaaaatacattctagtcgatgaaaaaatggggttcactttgatcccttggaaaagaaa-----gctccgttg |
195 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| ||| |||| |
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| T |
37789428 |
ctggaataatacatgacaaattaagagtgaaaatacattctagtcgatgaaaata--gggttcactttgatcccttaaaaaagaaattaaagctaggttg |
37789331 |
T |
|
| Q |
196 |
tttttatctaagcagaacgcacaattattaatctctaagaaaaataaaccggattactttaatgacgaattgaaccttcatctaaacattaaaaaacatg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37789330 |
tttttatctaagcagaacgcacaattattaatctctaagaaaaataaaccggattactttaatgacgaattgaaccttcatctaaacattaaaaaacatg |
37789231 |
T |
|
| Q |
296 |
gattttatctagtttgtcactccaccattccaccattttagatgcatgacatgtcattcaattaaggaacaacatgctcgttgacaatacttgcaaatta |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37789230 |
gattttatctagtttgtcactccaccattccaccattttagatgcatgacatgtcattcaattaaggaacaacatgctcgttgacaatacttgcaaatta |
37789131 |
T |
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| Q |
396 |
aagaaaaacatttaggtctttgttgctcatttaaattcctagatagtggttgcttcttat |
455 |
Q |
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| T |
37789130 |
aagaaaaacatttaggtctttgttgctcatttaaattcctagatagtggttgcttcttat |
37789071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 37798335 - 37798219
Alignment:
| Q |
1 |
gatgaaggtaatgcctggagtaaggttgaacattgcgaacataaatgttgatgaggttaaagtcatgccttcggcaaacatattcataaataaacttccc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||| || || |||||| | | || ||||||||||||||| |
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| T |
37798335 |
gatgaaggtaatgcctggagtaaggttgaacatagctagcataaatgttgctgaggttaaagcaataccctcggcataaaggtttataaataaacttccc |
37798236 |
T |
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| Q |
101 |
ctgaaataatacatgac |
117 |
Q |
| |
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|||||||| ||| |||| |
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| T |
37798235 |
ctgaaatattacgtgac |
37798219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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