View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_30 (Length: 469)
Name: NF20665_low_30
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 7622119 - 7622577
Alignment:
| Q |
1 |
agaccattagactccgtcaatacaaagttaacattttatgtgcgtaaactagatatactctgcaactcgtgtgcagctaatctctcgaaccagatagaat |
100 |
Q |
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| T |
7622119 |
agaccattagactccgtcaatacaaagttaacattttatgtgtgtaaactagatatactctgcaactcgtgtgcagctaatctctcgaaccagatagaat |
7622218 |
T |
|
| Q |
101 |
tgtagtaacaggtggcaaaattcttccgaatacatataagatgaagcatattagttattacaagtctcttttaatcacagtatataccttcccaaattac |
200 |
Q |
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| T |
7622219 |
tgtagtaacaggtggcaaaattcttccgaatacatataagatgaagcatattagttattacaagtctcttttaatcacagtatataccttcccaaattac |
7622318 |
T |
|
| Q |
201 |
taatgaacccattatcaattgatctagaaatacaaactttgaggcatgcaaataacataactaactgtcaatagtacacatcctatatttttcttttcat |
300 |
Q |
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| T |
7622319 |
taatgaacccattatcaattgatctagaaatacaaactttgaggcatgcaaataacataactaactgtcaatagtacacatcctatgtttttcttttcat |
7622418 |
T |
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| Q |
301 |
aggaacaaggtgaagatcaattttcttatgcatagttattcctggtttaacttgtgtatccagcacttgttccttgtcaaaaccatgaggcagattccaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622419 |
aggaacaaggtgaagatcaattttcttatgcatagttattcctggtttaacttgtgtatccagcacttgttccttgtcaaaaccatgaggcagattccaa |
7622518 |
T |
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| Q |
401 |
tcaaaagagtgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcat |
459 |
Q |
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| T |
7622519 |
tcaaaagattgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcat |
7622577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 188 - 459
Target Start/End: Original strand, 7633988 - 7634264
Alignment:
| Q |
188 |
cttcccaaattactaatgaacccattatcaattgatctagaaata---caaactttgaggcatgcaaataacataactaactgtcaatagtacacat--c |
282 |
Q |
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| T |
7633988 |
cttcccaaattacaaatgaaaccattatcaattgatctagaaataatacaaactttgaggcatgcaaataacataactaattgtcaatagtacatatatc |
7634087 |
T |
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| Q |
283 |
ctatatttttcttttcataggaacaaggtgaagatcaattttcttatgcatagttattcctggtttaacttgtgtatccagcacttgttccttgtcaaaa |
382 |
Q |
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|||| |||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||| |
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| T |
7634088 |
ctatggttttcttttcctaggaaaaaggcaaagatcaattttcttatgcatagttattcctggtttcacttttgtatccaacacttgttccttgtcaaaa |
7634187 |
T |
|
| Q |
383 |
ccatgaggcagattccaatcaaaagagtgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcat |
459 |
Q |
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| T |
7634188 |
ccatgaggcaacttccaatcaaaagagtgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcat |
7634264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 289 - 459
Target Start/End: Original strand, 7626958 - 7627128
Alignment:
| Q |
289 |
ttttcttttcataggaacaaggtgaagatcaattttcttatgcatagttattcctggtttaacttgtgtatccagcacttgttccttgtcaaaaccatga |
388 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7626958 |
ttttcttttcttaggaacaaggtaaagatcaattttcttatgcatagttattcctggtttaacttgtgtatccaacacttgttccttgtcaaaaccatga |
7627057 |
T |
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| Q |
389 |
ggcagattccaatcaaaagagtgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcat |
459 |
Q |
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| T |
7627058 |
ggcagcttccagtcaaaagagtgaagaagattagcaagtgtaagctcaacagtgaccactcccatgttcat |
7627128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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