View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_31 (Length: 458)
Name: NF20665_low_31
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 20 - 448
Target Start/End: Original strand, 6164293 - 6164722
Alignment:
| Q |
20 |
catttatcattctgcagggagcagtacacataagtcagagggatttcgtaatgtggctcaagaga-atatgatcaatgcatatatcttgagttttttcat |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
6164293 |
catttatcattctgcagggagcagtacacataagtcagagggatttcgtaatgtggctcaagagagatatgatcaatgcatatatcttgagttgtttcat |
6164392 |
T |
|
| Q |
119 |
tattaggccattgatttcaagatttatgaagtgaaataatcaacaagacaggaggatggatggggattttattttcatatttctttctttttaatgatgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6164393 |
tattaggccattgatttcaagatttatgaagtgaaataatcaacaagacaggaggatggatggggattttattttcatatttctttctttttaatgatgt |
6164492 |
T |
|
| Q |
219 |
taattgtgaggtggatgctattgtggaagaggtgaaagtcatggcttggaagtgggtgttgggtagaatgcgcatcccggtttgtatgttttttgagtgg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6164493 |
taattgtgaggtggatgctattgtggaagaggtgaaagtcatggcttggaagtgggtgttgggtagaatgcgcatcccggtttgtatgttttttgagtgg |
6164592 |
T |
|
| Q |
319 |
acttggaatctacaatggtgccttcgaaggactcccagtcggctgagatggatgcagcagtaggggaggtgnnnnnnnactgctgtgcctgcgtggatag |
418 |
Q |
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| T |
6164593 |
acttggaatccacaatggtgccttcgaaggactcccagtcggctgagatggatgcagcagtaggggaggtgtttttttactgctgtgcctgcgtggatag |
6164692 |
T |
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| Q |
419 |
ctgcctgggcttgctgcattttcccctttg |
448 |
Q |
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| T |
6164693 |
ctgcctgggcttgctgcattttcccctttg |
6164722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 21 - 209
Target Start/End: Original strand, 6138977 - 6139168
Alignment:
| Q |
21 |
atttatcattctgcagggagcagtacacataagtcagagggatttcgtaatgtggctcaagaga---atatgatcaatgcatatatcttgagttttttca |
117 |
Q |
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|||||||| ||||||| ||||||||||||| |||| ||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||| |
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| T |
6138977 |
atttatcaatctgcagacagcagtacacataggtcaaagggatttcgtaaagtggctcgagagagagatatgatcaatgcatatatcttgagttgtttca |
6139076 |
T |
|
| Q |
118 |
ttattaggccattgatttcaagatttatgaagtgaaataatcaacaagacaggaggatggatggggattttattttcatatttctttctttt |
209 |
Q |
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|||||||||||| ||||||||||||||| || |||||||||||||||||||||| ||||||||||| ||||| |||| |||||||||||||| |
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| T |
6139077 |
ttattaggccatagatttcaagatttataaattgaaataatcaacaagacaggaagatggatggggtttttactttcctatttctttctttt |
6139168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 13283122 - 13282925
Alignment:
| Q |
20 |
catttatcattctgcagggagcagtacacataagtcagagggatttcgtaatgtggctcaagaga-atatgatcaatgcatatatcttgagttttttcat |
118 |
Q |
| |
|
||||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||| || |
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| T |
13283122 |
catttatcaatctgcagagagcagtacgcataagtcagagggatttcgtaaagtggctcgagagagatatgatcaatgcatatatcttgagttgttttat |
13283023 |
T |
|
| Q |
119 |
tattaggccattgatttcaagatttatgaagtgaaa-----taatcaacaagacaggaggatggatgggg--attttattttcatatttctttctttt |
209 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |
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| T |
13283022 |
tattaggccatagatttcaagatttatgaagtgaaatggagtaatcaacaagacaggaagatggatggggtttttttactttcatatttctttctttt |
13282925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 6234082 - 6234174
Alignment:
| Q |
20 |
catttatcattctgcagggagcagtacacataagtcagagggatttcgtaatgtggctcaagaga-atatgatcaatgcatatatcttgagtt |
111 |
Q |
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| T |
6234082 |
catttatcaatctgcagagagcagtacacataggtcagagggatttcgtaaagtgtctcgagagatatatgatcaatgcatatatcttgagtt |
6234174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 6241868 - 6241959
Alignment:
| Q |
20 |
catttatcattctgcagggagcagtacacataagtcagagggatttcgtaatgtggctcaagaga-atatgatcaatgcatatatcttgagt |
110 |
Q |
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||||||||| ||||||| ||| |||||||||| |||||||||||| ||||| ||||||| ||||| |||||||||||||||||||||||||| |
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| T |
6241868 |
catttatcaatctgcagtgagaagtacacataggtcagagggattccgtaaagtggctcgagagagatatgatcaatgcatatatcttgagt |
6241959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 6255096 - 6255185
Alignment:
| Q |
20 |
catttatcattctgcagggagcagtacacataagtcagagggatttcgtaatgtggctcaagaga-atatgatcaatgcatatatcttga |
108 |
Q |
| |
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||||||||| |||||| |||||||||||| | |||||||||||||||||| ||| ||| ||||| ||||||||||||| |||||||||| |
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| T |
6255096 |
catttatcaatctgcaaagagcagtacacacaggtcagagggatttcgtaaagtgactcgagagagatatgatcaatgcttatatcttga |
6255185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 206 - 319
Target Start/End: Original strand, 368435 - 368548
Alignment:
| Q |
206 |
tttttaatgatgttaattgtgaggtggatgctattgtggaagaggtgaaagtcatggcttggaagtgggtgttgggtagaatgcgcatcccggtttgtat |
305 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| |||||||| |||||| | |||||| ||| ||||||||||| | | |
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| T |
368435 |
tttttaatgatgttaattttgaggtggatgctatggtggaggaggtgaaagtcaaggcttggaggtgggtcataggtagattgcacatcccggtttcttt |
368534 |
T |
|
| Q |
306 |
gttttttgagtgga |
319 |
Q |
| |
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|| ||| ||||||| |
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| T |
368535 |
gtatttcgagtgga |
368548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 206 - 312
Target Start/End: Complemental strand, 14733009 - 14732903
Alignment:
| Q |
206 |
tttttaatgatgttaattgtgaggtggatgctattgtggaagaggtgaaagtcatggcttggaagtgggtgttgggtagaatgcgcatcccggtttgtat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||||| ||| | ||||| ||||||||| ||||||||||||| | | |||||| ||||||||||| |
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|
| T |
14733009 |
tttttaatgatgttaattgtgaggtggacgccgtggtggaggagatcaaagtggtggcttggaggtgggtgttgggtcggacgcgcattccggtttgtat |
14732910 |
T |
|
| Q |
306 |
gtttttt |
312 |
Q |
| |
|
||||||| |
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|
| T |
14732909 |
gtttttt |
14732903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 26447137 - 26447025
Alignment:
| Q |
206 |
tttttaatgatgttaattgtgaggtggatgctattgtggaagaggtgaaagtcatggcttggaagtgggtgttgggtagaatgcgcatcccggtttgtat |
305 |
Q |
| |
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|||| ||||||| ||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||| | || |||||||||| || |||||||| | |
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| T |
26447137 |
ttttcaatgatgctaattttgaggtggatgtcattgtggaaaaggtgaaagtgttggcttggaagtgggcgatgtgtagaatgcgtattccggtttgctt |
26447038 |
T |
|
| Q |
306 |
gttttttgagtgg |
318 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26447037 |
attttttgagtgg |
26447025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 3700541 - 3700611
Alignment:
| Q |
206 |
tttttaatgatgttaattgtgaggtggatgctattgtggaagaggtgaaagtcatggcttggaagtgggtg |
276 |
Q |
| |
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||||||| ||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||| |
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| T |
3700541 |
tttttaacgatgttaatgtagaggtggatgcaattgttgaagaggtgaaagtgttggcttggaagtgggtg |
3700611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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