View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_33 (Length: 450)
Name: NF20665_low_33
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 437
Target Start/End: Complemental strand, 38718782 - 38718350
Alignment:
| Q |
7 |
attatctaaacataaaagtaagtaaaacctctagatacataacaaattcaaacttatcttatacaaatattataatttattttcaacagaaatcaaccac |
106 |
Q |
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| T |
38718782 |
attatctaaacataaaagtaagtaaaacctctagatacataacaaattcaaacttatcttatacaaatattataatttattttcaacagaa-tcaaccac |
38718684 |
T |
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| Q |
107 |
actagaagttagannnnnnnncctgtttttgaaaaattgaacacccaaaattgttctatatgcaccctcatcttcaaccattaatcttagttgaatcaac |
206 |
Q |
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| T |
38718683 |
actagaagttagattttttttcctgtttttgaaaaattgaacacccaaaattgttctatatgcaccctcatcttcaaccattgatcttagttgaataaac |
38718584 |
T |
|
| Q |
207 |
aactttagatttaaacactacaatgaagcagaacttcattcaatttaaggggttggttgatagtggaagggtgttgccaaaaaggttcggcgttattagt |
306 |
Q |
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| T |
38718583 |
aactttagatttatacactacaatgaagcagaacttcattcaatttaaggggttggttgatagtggaagggtgttgccaaaaaggttcggcgttattagt |
38718484 |
T |
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| Q |
307 |
ttgcttgcgcgcatttggg-aaatctgaaaatgtcgcaatgagaaac----atatacnnnnnnnggatcaatggaatcatggctagaagatataaaattg |
401 |
Q |
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| T |
38718483 |
ttgcttgcgcgcatttgggtaaatctg-aaatgtcgcaatgagaaacatttatatac-aaaaaaggatcaatggaatcatggctagaagatataaaattg |
38718386 |
T |
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| Q |
402 |
atatcttggtaaatagtggatcacatgggttcatct |
437 |
Q |
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| T |
38718385 |
atatcttggtaaatagtggatcacatgggttcatct |
38718350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 13335467 - 13335398
Alignment:
| Q |
230 |
tgaagcagaacttcattcaatttaaggggttggttgatagtggaagggtgttgccaaaaaggttcggcgt |
299 |
Q |
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| T |
13335467 |
tgaagcagaacttcattcaattcaaggggctgatcgatagcggaagggtgttgacagaaaagttcagcgt |
13335398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 410
Target Start/End: Complemental strand, 13335336 - 13335299
Alignment:
| Q |
373 |
tggaatcatggctagaagatataaaattgatatcttgg |
410 |
Q |
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| T |
13335336 |
tggaatcatggctagaagaaataaaattgctatcttgg |
13335299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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