View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_35 (Length: 443)

Name: NF20665_low_35
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_35
NF20665_low_35
[»] chr3 (24 HSPs)
chr3 (192-425)||(20368893-20369125)
chr3 (192-356)||(52695290-52695451)
chr3 (240-364)||(27163781-27163902)
chr3 (192-407)||(46978998-46979208)
chr3 (223-318)||(51240697-51240793)
chr3 (240-407)||(52203627-52203789)
chr3 (228-315)||(7628922-7629009)
chr3 (256-389)||(45472794-45472924)
chr3 (240-320)||(20178772-20178852)
chr3 (226-320)||(2119148-2119242)
chr3 (242-316)||(35296658-35296732)
chr3 (194-299)||(32835477-32835580)
chr3 (192-389)||(29324352-29324543)
chr3 (251-319)||(39614787-39614855)
chr3 (192-272)||(35053598-35053677)
chr3 (225-389)||(21853989-21854148)
chr3 (256-319)||(36505017-36505080)
chr3 (192-268)||(40615118-40615193)
chr3 (192-255)||(53530484-53530545)
chr3 (192-319)||(24121317-24121443)
chr3 (225-389)||(21858480-21858643)
chr3 (277-315)||(12736793-12736831)
chr3 (246-311)||(20619603-20619668)
chr3 (277-356)||(43472038-43472114)
[»] chr2 (21 HSPs)
chr2 (192-385)||(7018095-7018282)
chr2 (192-360)||(35306359-35306523)
chr2 (192-311)||(17328986-17329104)
chr2 (192-311)||(21813068-21813186)
chr2 (192-303)||(41324163-41324273)
chr2 (198-315)||(42794507-42794623)
chr2 (223-318)||(38595798-38595894)
chr2 (256-371)||(40364006-40364118)
chr2 (215-318)||(44364715-44364814)
chr2 (192-288)||(30485860-30485956)
chr2 (240-319)||(11561998-11562077)
chr2 (192-319)||(37272638-37272764)
chr2 (192-318)||(30382538-30382663)
chr2 (227-316)||(5591012-5591101)
chr2 (256-354)||(40498818-40498912)
chr2 (247-306)||(35429175-35429234)
chr2 (240-289)||(40083262-40083311)
chr2 (192-289)||(45389020-45389116)
chr2 (226-340)||(26352897-26353006)
chr2 (263-354)||(36467483-36467569)
chr2 (269-354)||(8948326-8948407)
[»] chr1 (22 HSPs)
chr1 (192-319)||(14287291-14287417)
chr1 (192-354)||(25294333-25294490)
chr1 (195-407)||(17116523-17116734)
chr1 (192-354)||(31513324-31513481)
chr1 (192-319)||(38682645-38682770)
chr1 (192-315)||(41827942-41828063)
chr1 (243-402)||(10443751-10443907)
chr1 (256-354)||(11767475-11767570)
chr1 (241-310)||(49899477-49899546)
chr1 (227-319)||(4972800-4972892)
chr1 (230-311)||(16123081-16123161)
chr1 (192-363)||(31183719-31183886)
chr1 (217-315)||(40694142-40694240)
chr1 (192-320)||(271242-271369)
chr1 (230-309)||(4966994-4967073)
chr1 (192-319)||(22790879-22791001)
chr1 (222-319)||(35160397-35160494)
chr1 (192-319)||(13644041-13644170)
chr1 (251-389)||(50709779-50709909)
chr1 (318-402)||(51898497-51898580)
chr1 (277-389)||(46593948-46594056)
chr1 (192-264)||(40032902-40032973)
[»] chr4 (25 HSPs)
chr4 (192-354)||(40217830-40217989)
chr4 (192-315)||(19721439-19721561)
chr4 (217-319)||(45661959-45662061)
chr4 (192-346)||(7208226-7208377)
chr4 (229-319)||(22588307-22588397)
chr4 (222-304)||(28101749-28101831)
chr4 (196-389)||(2295645-2295832)
chr4 (192-315)||(2242614-2242737)
chr4 (215-286)||(10037710-10037781)
chr4 (194-319)||(47922732-47922856)
chr4 (192-381)||(15476414-15476598)
chr4 (192-309)||(53018308-53018421)
chr4 (244-319)||(25059115-25059188)
chr4 (256-354)||(6008400-6008495)
chr4 (226-311)||(4776053-4776139)
chr4 (230-341)||(22198580-22198688)
chr4 (201-308)||(44987546-44987656)
chr4 (268-347)||(53586595-53586671)
chr4 (192-311)||(27675714-27675835)
chr4 (192-311)||(4110103-4110216)
chr4 (192-311)||(35823233-35823356)
chr4 (206-264)||(35103292-35103349)
chr4 (192-342)||(10632299-10632443)
chr4 (192-309)||(45774273-45774388)
chr4 (222-282)||(54163160-54163221)
[»] chr5 (21 HSPs)
chr5 (192-407)||(31113638-31113850)
chr5 (192-399)||(32076182-32076387)
chr5 (192-315)||(29230810-29230932)
chr5 (192-407)||(19099692-19099903)
chr5 (240-354)||(7057323-7057435)
chr5 (192-319)||(28470050-28470178)
chr5 (256-354)||(2627789-2627884)
chr5 (192-319)||(8802538-8802664)
chr5 (230-317)||(39700747-39700834)
chr5 (192-319)||(16755799-16755926)
chr5 (256-354)||(8229486-8229581)
chr5 (256-354)||(34764495-34764591)
chr5 (222-402)||(39935914-39936091)
chr5 (192-274)||(31210624-31210705)
chr5 (242-303)||(27925795-27925856)
chr5 (256-428)||(26565152-26565320)
chr5 (244-340)||(36906953-36907046)
chr5 (192-259)||(36906865-36906930)
chr5 (269-355)||(39329734-39329816)
chr5 (228-288)||(41368919-41368979)
chr5 (266-319)||(34511046-34511099)
[»] chr7 (17 HSPs)
chr7 (192-311)||(47843503-47843622)
chr7 (192-319)||(45492440-45492566)
chr7 (192-317)||(2185471-2185596)
chr7 (256-408)||(25310653-25310802)
chr7 (192-292)||(3751251-3751349)
chr7 (192-319)||(22542665-22542790)
chr7 (192-356)||(42040153-42040311)
chr7 (192-311)||(43728194-43728312)
chr7 (256-354)||(43495582-43495677)
chr7 (256-354)||(48153226-48153321)
chr7 (260-356)||(40837273-40837367)
chr7 (195-315)||(45647961-45648080)
chr7 (192-385)||(9229298-9229482)
chr7 (222-310)||(31396922-31397011)
chr7 (268-311)||(7858214-7858257)
chr7 (192-319)||(22201378-22201505)
chr7 (192-319)||(22236316-22236443)
[»] chr8 (23 HSPs)
chr8 (203-311)||(26079541-26079648)
chr8 (192-319)||(16591152-16591280)
chr8 (230-354)||(11755410-11755531)
chr8 (192-319)||(24728275-24728409)
chr8 (226-308)||(31431065-31431147)
chr8 (192-353)||(9410137-9410292)
chr8 (242-319)||(13003563-13003640)
chr8 (192-354)||(11789072-11789227)
chr8 (192-316)||(18928291-18928414)
chr8 (194-383)||(37232050-37232236)
chr8 (256-354)||(23877194-23877289)
chr8 (251-311)||(18322071-18322130)
chr8 (217-311)||(24888505-24888596)
chr8 (256-300)||(17748755-17748799)
chr8 (256-304)||(32856214-32856262)
chr8 (252-319)||(14180429-14180495)
chr8 (230-271)||(12007029-12007070)
chr8 (192-264)||(11991016-11991087)
chr8 (217-311)||(25430316-25430407)
chr8 (226-308)||(9136455-9136538)
chr8 (222-278)||(31332375-31332433)
chr8 (230-272)||(12006989-12007031)
chr8 (328-424)||(11991102-11991198)
[»] chr6 (11 HSPs)
chr6 (192-297)||(32340024-32340128)
chr6 (256-407)||(7435016-7435165)
chr6 (256-389)||(2987924-2988054)
chr6 (240-317)||(30928564-30928641)
chr6 (200-319)||(22297087-22297211)
chr6 (215-318)||(22054330-22054429)
chr6 (192-315)||(2032083-2032208)
chr6 (232-389)||(8486248-8486400)
chr6 (192-315)||(687815-687937)
chr6 (230-319)||(6108187-6108283)
chr6 (256-316)||(10229642-10229702)
[»] scaffold0015 (1 HSPs)
scaffold0015 (240-385)||(38234-38376)
[»] scaffold0565 (1 HSPs)
scaffold0565 (192-297)||(8170-8274)
[»] scaffold0027 (1 HSPs)
scaffold0027 (222-282)||(8300-8360)
[»] scaffold0495 (1 HSPs)
scaffold0495 (256-315)||(6357-6416)
[»] scaffold0464 (1 HSPs)
scaffold0464 (278-319)||(5894-5935)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 192 - 425
Target Start/End: Complemental strand, 20369125 - 20368893
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  20369125 attttaatcacatgtattatttcttaaaatattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtatttt--atac 20369028  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattt-aataaatttcaagtattcgtgtacccgtatcgtata 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  20369027 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttgaataaatttcaagtattcgtgtacccgtatcgtata 20368928  T
Q  391 atatccgcacccatatcacatattcgagcttcata 425  Q
    |||||||||||||||||||||||||| ||||||||    
T  20368927 atatccgcacccatatcacatattcgggcttcata 20368893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 192 - 356
Target Start/End: Complemental strand, 52695451 - 52695290
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgctta-ttttcttcaagtattttacata 290  Q
    ||||||||||||| |||||||| | |||| |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  52695451 attttgatcacatctattattt-taaaaaaattgtgacatttataataatataataataaagagtaatcaatgcttatttttcttcaagtattttacaca 52695353  T
Q  291 cacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaa 356  Q
    || || ||||||||||| ||| ||   |||| |||| || ||||| ||||| ||||||||||||||    
T  52695352 catatgagttttagtatcaaaatt---ttgtcaacgtattttagctgtatcgtatcttaaatttaa 52695290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 240 - 364
Target Start/End: Complemental strand, 27163902 - 27163781
Alignment:
Q  240 atataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgta 339  Q
    |||||||||| ||| ||| |||||| |||||||||||||| |||||||||| | ||||||||||||||||||||||   |||||||| ||||||||||||    
T  27163902 atataataatgaagggtactcaatgattattttcttcaagaattttacatatatataagttttagtataaaatttt---tgttaacgtatcttagccgta 27163806  T
Q  340 tcatatcttaaatttaataaatttc 364  Q
    || |||||||||||||| |||||||    
T  27163805 tcgtatcttaaatttaaaaaatttc 27163781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 192 - 407
Target Start/End: Complemental strand, 46979208 - 46978998
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||| |||||| ||||| ||||||||||| ||| |||||| ||||||||| | || |  |||||||| ||||||||||||||    
T  46979208 attttgatcacatgtattattttttaaaa-attgtaacttttataataatacaataatgaagagtaattagtgttacttttcttctagtattttacatac 46979110  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaataaatttcaagtattcgtgtacccgtatcgtataa 391  Q
    | |||| ||||| ||||||    || ||||||||| ||| |  |||||||||||| ||||||||| ||| |||  |||| || ||| || ||||||||      
T  46979109 agataaattttattataaa----tttttgttaacgtatcctgaccgtatcatatcctaaatttaaaaaaattcgcgtatccgcgtatccatatcgtatcg 46979014  T
Q  392 tatccgcacccatatc 407  Q
    || |||||||| ||||    
T  46979013 tacccgcacccgtatc 46978998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 318
Target Start/End: Complemental strand, 51240793 - 51240697
Alignment:
Q  223 ttgtgacttttataatgatataa-taataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgt 318  Q
    |||||||||||||||| |||||| ||||||||| |||| |||||||||| ||||||||||||||||| ||| || ||||||||||||||| ||||||    
T  51240793 ttgtgacttttataataatataaataataaagaataataaatgcttattatcttcaagtattttacacacatatgagttttagtataaaaattttgt 51240697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 240 - 407
Target Start/End: Complemental strand, 52203789 - 52203627
Alignment:
Q  240 atataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgta 339  Q
    |||||||||| ||| ||||| | |||||||||||||||||| ||||||||  | |||||||||||||||||||||   ||||||||| |||||||||| |    
T  52203789 atataataatgaagggtaattagtgcttattttcttcaagtgttttacat--atataagttttagtataaaattt---ttgttaacgtatcttagccgaa 52203695  T
Q  340 tcatatcttaaatttaataaatttcaagtattcgtgtacccgtatcgtataatatccgcacccatatc 407  Q
    || |||| ||||||| | ||| ||   ||||||  ||| |||||||||||  ||||||||||| ||||    
T  52203694 tcgtatcctaaattttaaaaaatttgcgtattcacgtatccgtatcgtatcgtatccgcacccgtatc 52203627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 315
Target Start/End: Complemental strand, 7629009 - 7628922
Alignment:
Q  228 acttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttt 315  Q
    ||||||||||| |||||||||| |||||||||||||| | ||||||||||||| ||||||||||| |||||||| | |||||| ||||    
T  7629009 acttttataataatataataatgaagagtaatcaatgttaattttcttcaagtgttttacatacatataagtttaattataaattttt 7628922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 389
Target Start/End: Original strand, 45472794 - 45472924
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattta 355  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||| ||   ||||||||  ||||||||| |||| |||| |||||||     
T  45472794 taatcaatgtttattttcttcaagtattttacatacatataagttttaatataaaaatt---ttgttaacatatcttagccatatcgtatcctaaatttt 45472890  T
Q  356 ataaatttcaagtattcgtgtacccgtatcgtat 389  Q
    | ||| |||   ||| || |||||||||||||||    
T  45472891 aaaaaattcgcatatccgcgtacccgtatcgtat 45472924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 320
Target Start/End: Complemental strand, 20178852 - 20178772
Alignment:
Q  240 atataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttg 320  Q
    |||||||||| ||  |||||||||||||||||| ||||||||||||||||| | |||||||||| |||||| |||||||||    
T  20178852 atataataatgaatggtaatcaatgcttatttttttcaagtattttacatatatataagttttaatataaattttttgttg 20178772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 320
Target Start/End: Original strand, 2119148 - 2119242
Alignment:
Q  226 tgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttg 320  Q
    ||||||||||||| ||| |||||| |||| | ||||||| |||||||||| ||||||||| ||| || ||||| ||||||||||| |||||||||    
T  2119148 tgacttttataataataaaataatgaagattgatcaatgtttattttctttaagtattttgcatccatataagctttagtataaattttttgttg 2119242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 35296658 - 35296732
Alignment:
Q  242 ataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaattttt 316  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||||||||||  ||| |||||||||||| |||||    
T  35296658 ataataatgaagggtagtcaatgcttattttcttcaagtattttacatacatgtaaattttagtataaatttttt 35296732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 32835477 - 32835580
Alignment:
Q  194 tttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacac 293  Q
    ||||||||||||||| |||| ||  || ||| ||||||||||||| ||||||||||||||| ||||| ||| || ||||||| ||||||||||||||||     
T  32835477 tttgatcacatatataattttttttaa-attatgacttttataataatataataataaagattaatccatg-tttttttcttgaagtattttacatacat 32835574  T
Q  294 ataagt 299  Q
    ||||||    
T  32835575 ataagt 32835580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 389
Target Start/End: Original strand, 29324352 - 29324543
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| ||||||||  ||||| ||||||||||| ||||| || ||||||| | || |||| |||| ||||||| |||||||||||||||| |    
T  29324352 attttgatcacatgtattattt--taaaaaattgtgacttt-ataataatttaataatgatgactaattaatgtttatttttttcaagtattttacatgc 29324448  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaataaatttcaagtattcgtgtacccgtatcgtat 389  Q
    | |||||||| | ||| ||   ||| |||| || | ||| || ||| ||| |||| ||||||||| | | |||  |||| ||||||||||||||||||    
T  29324449 atataagtttcattatgaa---ttttttgtcaatgtatcataaccgaatcgtatcctaaatttaaaataattcgcgtatccgtgtacccgtatcgtat 29324543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 39614855 - 39614787
Alignment:
Q  251 aagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgtt 319  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| ||||| |||||  ||||||||    
T  39614855 aagagtaatcaatgcttattttcttcaaatattttacatacatataaattttaatataatttttttgtt 39614787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 272
Target Start/End: Complemental strand, 35053677 - 35053598
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttatttt 272  Q
    |||||||| |||| ||||||||||||||| ||| ||||||||| ||| ||||||| | |||||||||||||| ||||||||    
T  35053677 attttgataacatgtattatttcttaaaa-attatgacttttacaataatataattacaaagagtaatcaatccttatttt 35053598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 389
Target Start/End: Original strand, 21853989 - 21854148
Alignment:
Q  225 gtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaa 324  Q
    ||||||||||| || ||||| || | ||||||||| ||||||| ||||  |||| |||||||||| || |||| ||||| ||||||  ||||||| |       
T  21853989 gtgacttttatgattatatagtattgaagagtaattaatgcttttttt--tcaaatattttacatgcatataaattttactataaatattttgttat--- 21854083  T
Q  325 cgaatcttagccgtatcatatcttaaatttaataaatttcaagtattcgtgtacccgtatcgtat 389  Q
    || ||||||||| ||||||||| ||||||| | || ||||  |||| || |||||||||||||||    
T  21854084 cgtatcttagccatatcatatcctaaattttaaaattttcgtgtatccgcgtacccgtatcgtat 21854148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 319
Target Start/End: Original strand, 36505017 - 36505080
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgtt 319  Q
    |||| |||| ||||||||||| ||||||||||||| | ||||||||||||||||| ||||||||    
T  36505017 taattaatgtttattttcttcgagtattttacatatatataagttttagtataaattttttgtt 36505080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 268
Target Start/End: Original strand, 40615118 - 40615193
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgctta 268  Q
    ||||||||||||  |||||||| |||| | |||| |||||||||||| |||||||||||| ||||||| ||||||||    
T  40615118 attttgatcacaagtattattt-ttaagaaattgcgacttttataataatataataataatgagtaattaatgctta 40615193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 53530545 - 53530484
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagag 255  Q
    ||||||||||||| ||||||||  | ||| ||||||||||||||||| ||||||||||||||||    
T  53530545 attttgatcacatgtattattt--tcaaaaattgtgacttttataataatataataataaagag 53530484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 319
Target Start/End: Original strand, 24121317 - 24121443
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    |||||||| ||||||||||||| |   || |||||||||||||| || ||||| ||   || | ||||||||| ||||||| ||||| |||||||||| |    
T  24121317 attttgataacatatattatttttggtaa-attgtgacttttatgattatatagtatagaacaataatcaatgtttatttttttcaattattttacatgc 24121415  T
Q  292 acataagttttagtataaaatttttgtt 319  Q
    | |||| ||||||||||||  |||||||    
T  24121416 atataaattttagtataaatattttgtt 24121443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 389
Target Start/End: Original strand, 21858480 - 21858643
Alignment:
Q  225 gtgacttttataatgatataataataaagagtaatcaatgcttattttct--tcaagtattttacatacacataagttttagtataaaatttttgttgtt 322  Q
    ||||||||||| || ||||| || | ||||||||| |||||||||||| |  |||| |||||| ||| || |||| ||||||||||||   | | |||||    
T  21858480 gtgacttttatgattatatagtattgaagagtaattaatgcttatttttttatcaaatattttgcatgcatataaattttagtataaa---tattttgtt 21858576  T
Q  323 aacgaatcttagccgtatcatatcttaaatttaataaatttcaagtattcgtgtacccgtatcgtat 389  Q
    |||| |||||| | ||||| |||| | ||||| | |||| ||  |||| || |||||||||||||||    
T  21858577 aacgtatcttaactgtatcgtatcctgaattttaaaaatatcgtgtatccgcgtacccgtatcgtat 21858643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 12736793 - 12736831
Alignment:
Q  277 aagtattttacatacacataagttttagtataaaatttt 315  Q
    |||||||||||| ||| ||||||||||||||||||||||    
T  12736793 aagtattttacaaacatataagttttagtataaaatttt 12736831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 20619603 - 20619668
Alignment:
Q  246 taataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaa 311  Q
    |||| |||||||||||| |||  ||||||||||||||||||  | ||||||||||| |||| ||||    
T  20619603 taatgaagagtaatcaacgctgcttttcttcaagtattttatttgcacataagtttcagtaaaaaa 20619668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 356
Target Start/End: Original strand, 43472038 - 43472114
Alignment:
Q  277 aagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaa 356  Q
    ||||||||||||| || |||| ||||||||||||   | | ||||||||| |||||||||||||| |||| ||| |||||    
T  43472038 aagtattttacatgcatataaattttagtataaa---tattttgttaacgtatcttagccgtatcgtatcctaattttaa 43472114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 192 - 385
Target Start/End: Original strand, 7018095 - 7018282
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||| |||||| ||||  ||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  7018095 attttgatcacatgtattattttttaaaa-attg--acttttataataatataataatgaagagtaatcaatgtttattttcttcaagtattttacatac 7018191  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaataaatttcaagtattcgtgtacccgtatc 385  Q
    |  ||||||||||||||||| ||   ||||||||| |||||||||||||| |||| ||||||||| |||  ||| |||||||| |||| |||||    
T  7018192 atgtaagttttagtataaaaatt---ttgttaacgtatcttagccgtatcgtatcctaaatttaaaaaaaatcatgtattcgtatacctgtatc 7018282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 192 - 360
Target Start/End: Original strand, 35306359 - 35306523
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    |||||||| ||||||||||||  |||||| ||||| ||||||||||| |||||||||| || ||||||||||| |||||||||||||||||||||||| |    
T  35306359 attttgatgacatatattattatttaaaa-attgtcacttttataataatataataatgaaaagtaatcaatgtttattttcttcaagtattttacatgc 35306457  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaataaa 360  Q
    | |||| ||||||||| |   |||| ||||||||| ||| || |||||||||||| |||||||||||||    
T  35306458 atataaattttagtatta---tttttttgttaacgtatcctaaccgtatcatatcctaaatttaataaa 35306523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 192 - 311
Target Start/End: Original strand, 17328986 - 17329104
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||| ||||||| |||||||| ||||||  |||||||||||||||| | ||||||||||| ||||||| ||| ||||||||||||||||||| ||||||    
T  17328986 attttcatcacatgtattattttttaaaat-ttgtgacttttataataagataataataaaaagtaatcgatgtttattttcttcaagtatttcacatac 17329084  T
Q  292 acataagttttagtataaaa 311  Q
    | ||||||||||||||||||    
T  17329085 aaataagttttagtataaaa 17329104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 192 - 311
Target Start/End: Original strand, 21813068 - 21813186
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||| | |||| ||||||||||||||||| |||||||||| ||||||||||||| || ||||||||| | ||||||||||      
T  21813068 attttgatcacatgtattattt-taaaaaaattgtgacttttataataatataataatgaagagtaatcaatactgattttcttcgattattttacatga 21813166  T
Q  292 acataagttttagtataaaa 311  Q
    | ||||||||||||||||||    
T  21813167 atataagttttagtataaaa 21813186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 192 - 303
Target Start/End: Original strand, 41324163 - 41324273
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||| |||||| ||||  ||||||||||| |||||||||| ||| |||||||||| ||||||| ||||||||||||||||||    
T  41324163 attttgatcacatgtattattt-ttaaaaaattgatacttttataataatataataatgaagggtaatcaatgtttattttgttcaagtattttacatac 41324261  T
Q  292 acataagtttta 303  Q
    | ||||||||||    
T  41324262 atataagtttta 41324273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 198 - 315
Target Start/End: Complemental strand, 42794623 - 42794507
Alignment:
Q  198 atcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataa 297  Q
    ||||||| |||||||| |||||| ||| | ||||||||||| ||| |||||| |||||||||||||| | ||||||||||||||||||||||||| | ||    
T  42794623 atcacatgtattattttttaaaa-attataacttttataataatacaataatgaagagtaatcaatgttaattttcttcaagtattttacatacatacaa 42794525  T
Q  298 gttttagtataaaatttt 315  Q
    |||||| |||||| ||||    
T  42794524 gttttattataaattttt 42794507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 318
Target Start/End: Complemental strand, 38595894 - 38595798
Alignment:
Q  223 ttgtgacttttataatgatataa-taataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgt 318  Q
    |||||||||||||||| |||||| ||||||||| |||| |||||||||| ||||||||||||||||| ||| || ||||||||||||||| ||||||    
T  38595894 ttgtgacttttataataatataaataataaagaataataaatgcttattatcttcaagtattttacacacatatgagttttagtataaaaattttgt 38595798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 256 - 371
Target Start/End: Original strand, 40364006 - 40364118
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattta 355  Q
    ||||||||| |||||||||||||||||||||| |||| |||||||||||||||||   ||| ||||||||| ||||||| |||||| |||| |||||||     
T  40364006 taatcaatgtttattttcttcaagtattttacgtacatataagttttagtataaa---ttttttgttaacgtatcttagtcgtatcgtatcctaaatttt 40364102  T
Q  356 ataaatttcaagtatt 371  Q
    | ||| |||| |||||    
T  40364103 aaaaaattcacgtatt 40364118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 215 - 318
Target Start/End: Original strand, 44364715 - 44364814
Alignment:
Q  215 ttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaattt 314  Q
    |||||| ||||||||||  ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||   ||||| ||||||||||||||| ||    
T  44364715 ttaaaaaattgtgactt--ataataatataataataaagagtaaccaatgtttattttcttcaagtattttac--tcacatgagttttagtataaaaatt 44364810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 192 - 288
Target Start/End: Original strand, 30485860 - 30485956
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttaca 288  Q
    ||||||||||||  ||||| || || ||| ||| ||||||||||||| |||||||||||||||||||||||||||||| | ||| ||||||||||||    
T  30485860 attttgatcacacgtattaattttttaaaaattttgacttttataataatataataataaagagtaatcaatgcttatgtactttaagtattttaca 30485956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 11562077 - 11561998
Alignment:
Q  240 atataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgtt 319  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||||| |||||||| || |||||||    
T  11562077 atataataatgaagggtaatcaatgcttattttcttcaagtattttatatacatataagtgttagtatacaaattttgtt 11561998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 319
Target Start/End: Complemental strand, 37272764 - 37272638
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    |||||||||| || |||||||| ||| || ||||| | |||||||||  ||||||||| |||||||||||||| | ||||| ||||||||||||||||||    
T  37272764 attttgatcatatgtattattt-ttacaaaattgttagttttataatattataataatgaagagtaatcaatgttcatttttttcaagtattttacatac 37272666  T
Q  292 acataagttttagtataaaatttttgtt 319  Q
    | |||| ||||  |||||| ||||||||    
T  37272665 atataaatttttatataaattttttgtt 37272638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 192 - 318
Target Start/End: Complemental strand, 30382663 - 30382538
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||| | |||||||| || ||| ||||  ||||||||||| |||||||||||||||||||| ||| ||||||||||||| ||| |||||| ||    
T  30382663 attttgatcacctgtattatttttttaaa-attgcaacttttataataatataataataaagagtaattaatacttattttcttcatgtaatttacacac 30382565  T
Q  292 acataagttttagtataaaatttttgt 318  Q
    | || ||||||| ||||| | ||||||    
T  30382564 atatgagttttaatataataattttgt 30382538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 5591012 - 5591101
Alignment:
Q  227 gacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaattttt 316  Q
    ||||||||| ||||||||||||| || |||||||| || |||||||||||||||| ||| |||| | ||||||||||||||||| |||||    
T  5591012 gacttttatgatgatataataattaaaagtaatcattgtttattttcttcaagtaatttgcataaatataagttttagtataaatttttt 5591101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 354
Target Start/End: Original strand, 40498818 - 40498912
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattt 354  Q
    ||||||||  ||||||||||||||||||||||||||| ||||||||||||||||| |||||    |||||| |||||||| ||||| |||| |||||||    
T  40498818 taatcaatatttattttcttcaagtattttacatacatataagttttagtataaatttttt----ttaacgtatcttagctgtatcgtatcctaaattt 40498912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 35429175 - 35429234
Alignment:
Q  247 aataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagta 306  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||    
T  35429175 aataaagagtaatcaatgcttattttcttcaagtattgtacatgcatattagttttagta 35429234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 40083262 - 40083311
Alignment:
Q  240 atataataataaagagtaatcaatgcttattttcttcaagtattttacat 289  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  40083262 atataataataaagaataatcaatgtttattttcttcaagtattttacat 40083311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 192 - 289
Target Start/End: Original strand, 45389020 - 45389116
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacat 289  Q
    ||||||||||||| |||||||| ||  || |||||||||||||| || ||||| || | || ||||||| ||||||||||| ||||||||||||||||    
T  45389020 attttgatcacatgtattattttttgtaa-attgtgacttttatgattatatagtattgaaaagtaatcgatgcttatttttttcaagtattttacat 45389116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 340
Target Start/End: Original strand, 26352897 - 26353006
Alignment:
Q  226 tgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaac 325  Q
    |||||||||| ||  |||| || | |||||||||||||||||||||| ||||||||||||||||  | |||| ||||||||||||   | | ||||||||    
T  26352897 tgacttttatgattttatagtattgaagagtaatcaatgcttatttt-ttcaagtattttacat-gatataaattttagtataaa---tattttgttaac 26352991  T
Q  326 gaatcttagccgtat 340  Q
    | |||||||||||||    
T  26352992 gtatcttagccgtat 26353006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 354
Target Start/End: Original strand, 36467483 - 36467569
Alignment:
Q  263 tgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattt 354  Q
    |||||||||||||||||| ||||||||| | |||  ||||||||||||| ||   ||||||||| || ||||||||||| |||| |||||||    
T  36467483 tgcttattttcttcaagtgttttacatatatata--ttttagtataaaaatt---ttgttaacgtattttagccgtatcgtatcctaaattt 36467569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 354
Target Start/End: Original strand, 8948326 - 8948407
Alignment:
Q  269 ttttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattt 354  Q
    |||||||||||||||| ||||  | |||||||||||||||||   ||| ||||||||| |||||||  |||||||||| |||||||    
T  8948326 ttttcttcaagtattt-acatctatataagttttagtataaa---ttttttgttaacgtatcttagttgtatcatatcctaaattt 8948407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 192 - 319
Target Start/End: Original strand, 14287291 - 14287417
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||| ||||||| |||||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||  |||||||||||||||||||||||||    
T  14287291 attttcatcacatgtattattt-ttaaaaaattgtgacttttataattagataataataaagagtaatcaatgtatattttcttcaagtattttacatac 14287389  T
Q  292 acataagttttagtataaaatttttgtt 319  Q
    | ||||||||| ||||||||||||||||    
T  14287390 aaataagttttggtataaaatttttgtt 14287417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 192 - 354
Target Start/End: Complemental strand, 25294490 - 25294333
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||| |||||| ||||| ||||||||||| ||| |||||| |||||||||||||| | |||||||| |||||||||||||||    
T  25294490 attttgatcacatgtattattttttaaaa-attgtaacttttataataatacaataatgaagagtaatcaatgttaattttcttgaagtattttacatac 25294392  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattt 354  Q
    | |||||||||| ||||||    || ||||||||| ||| || ||||||| |||| |||||||    
T  25294391 atataagttttattataaa----tttttgttaacgtatcataaccgtatcgtatcctaaattt 25294333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 195 - 407
Target Start/End: Original strand, 17116523 - 17116734
Alignment:
Q  195 ttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttac----ata 290  Q
    ||||||||||||||||||| |||||| ||||| ||||||||||| ||| |||||| ||||||||| |||  | |||||||| |||||||||||    |||    
T  17116523 ttgatcacatatattattt-ttaaaaaattgtaacttttataataatacaataatgaagagtaattaatattaattttctttaagtattttacatatata 17116621  T
Q  291 cacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaataaatttcaagtattcgtgtacccgtatcgtata 390  Q
    || |||||||| | ||||||    || ||||||||| ||| || ||||||| |||||||||||||| ||| |||  |||| || |||||||||||||||     
T  17116622 catataagtttaattataaa----tttttgttaacgtatcctaaccgtatcgtatcttaaatttaaaaaaattcgcgtatccgcgtacccgtatcgtatt 17116717  T
Q  391 atatccgcacccatatc 407  Q
     || |||||||||||||    
T  17116718 gtacccgcacccatatc 17116734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 192 - 354
Target Start/End: Complemental strand, 31513481 - 31513324
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    |||||||  |||| |||||||| |||||| ||||| ||||||||||| ||| |||||| |||||||||||||| | ||||||||||||||||||||||||    
T  31513481 attttgacaacatgtattattttttaaaa-attgtaacttttataataatacaataatgaagagtaatcaatgttaattttcttcaagtattttacatac 31513383  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattt 354  Q
    | |||||||||| ||||||    || ||||||||| ||| || ||||||  ||||||||||||    
T  31513382 atataagttttattataaa----tttttgttaacgtatcataaccgtattgtatcttaaattt 31513324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 192 - 319
Target Start/End: Complemental strand, 38682770 - 38682645
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    |||||||||| || |||||||| ||||||  ||||||| |||||||| | ||||| || |||||||||||||| |||||||||||||||||||||||||     
T  38682770 attttgatcatatttattattttttaaaa--ttgtgacatttataataagataattatgaagagtaatcaatgtttattttcttcaagtattttacatat 38682673  T
Q  292 acataagttttagtataaaatttttgtt 319  Q
    |  ||||||||| |||| ||||||||||    
T  38682672 atttaagttttattatagaatttttgtt 38682645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 315
Target Start/End: Original strand, 41827942 - 41828063
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||| || ||| ||||| |||||||| || ||| |||||| ||||||||| |||||| ||||||||||||||||||||||||    
T  41827942 attttgatcacatgtattatttttttaaa-attgtaacttttattat-atacaataatgaagagtaattaatgctaattttcttcaagtattttacatac 41828039  T
Q  292 acataagttttagtataaaatttt 315  Q
    | |||||||||| |||||| ||||    
T  41828040 atataagttttattataaattttt 41828063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 243 - 402
Target Start/End: Original strand, 10443751 - 10443907
Alignment:
Q  243 taataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatca 342  Q
    ||||||| ||| ||| |||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||   | ||||||  ||| ||||||||||     
T  10443751 taataatgaagggtagtcaatgcttattttcttcaagtattttatatacatataagttttagtatgaaaatt---tcgttaacttatcatagccgtatcg 10443847  T
Q  343 tatcttaaatttaataaatttcaagtattcgtgtacccgtatcgtataatatccgcaccc 402  Q
    |||| ||||||||| ||| | || |||| || ||||| |||||||||  || ||||||||    
T  10443848 tatcctaaatttaaaaaaatccacgtatccgcgtacctgtatcgtatcgtacccgcaccc 10443907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 11767570 - 11767475
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattt 354  Q
    ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| ||   ||||||||| |||||| ||||||| |||| |||||||    
T  11767570 taatcaatgtttattttcttcaagtattttacatacatatatgttttagtataaaaatt---ttgttaacgtatcttaaccgtatcgtatcctaaattt 11767475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 49899477 - 49899546
Alignment:
Q  241 tataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaa 310  Q
    ||||||||| |||||||||||||| |||||||||| ||||||||||| |||| |||||||||||||||||    
T  49899477 tataataatgaagagtaatcaatgtttattttctttaagtattttacttacatataagttttagtataaa 49899546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 4972892 - 4972800
Alignment:
Q  227 gacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgtt 319  Q
    |||||||||||| ||| |||||  ||||||| | |||| ||||||| | ||||||||||||||||| |||||||||||||||||| |||||||    
T  4972892 gacttttataataataaaataacgaagagtattaaatgtttattttttccaagtattttacatacatataagttttagtataaaaattttgtt 4972800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 16123081 - 16123161
Alignment:
Q  230 ttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaa 311  Q
    |||||||||  ||||||||| |||||||||||||| |||||| ||||||||||||||||| || |||||| |||||||||||    
T  16123081 ttttataatagtataataatcaagagtaatcaatgtttattt-cttcaagtattttacatgcatataagtgttagtataaaa 16123161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 363
Target Start/End: Original strand, 31183719 - 31183886
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    |||||||| |||| |||||||| ||  || || ||||||||||| || ||||| || | |||||||||||||| || |||| || ||||||||||||| |    
T  31183719 attttgattacatgtattattttttgtaa-atggtgacttttatgattatatagtattgaagagtaatcaatgttttttttttttaagtattttacatgc 31183817  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaataaattt 363  Q
    | |||| |||||| |||||   | | ||||||||| |||||||||||||| |||| ||||||| | ||||||    
T  31183818 atataaattttagaataaa---tattttgttaacgtatcttagccgtatcgtatcctaaattttaaaaattt 31183886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 315
Target Start/End: Original strand, 40694142 - 40694240
Alignment:
Q  217 aaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttt 315  Q
    |||| ||||| | ||||||||| ||| |||||| |||||||||||||  | ||||||||||||||||||||||| | |||||||| | |||||| ||||    
T  40694142 aaaaaattgtaaattttataataatacaataatgaagagtaatcaatattaattttcttcaagtattttacataaatataagtttcattataaattttt 40694240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 320
Target Start/End: Original strand, 271242 - 271369
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    |||||||| |||| |||||||| ||  || ||| ||||||||| | | |||||||||| |||||||||  ||| |||||||||||||||| |||||||      
T  271242 attttgataacatgtattattttttttaa-attatgacttttagattaatataataatgaagagtaattcatgtttattttcttcaagtaatttacatga 271340  T
Q  292 acataagttttagtataaaatttttgttg 320  Q
    | |||||||||| |||||||  |||||||    
T  271341 atataagttttaatataaaaaatttgttg 271369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 4966994 - 4967073
Alignment:
Q  230 ttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataa 309  Q
    ||||||||| ||| |||||  ||||||| | |||| ||||||| ||||||| ||||||||||| ||||||||||||||||    
T  4966994 ttttataataataaaataacgaagagtattaaatgtttatttttttcaagtgttttacatacatataagttttagtataa 4967073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 319
Target Start/End: Complemental strand, 22791001 - 22790879
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||| ||  || |||||||||||||| || ||||| || | |||||||||||||| || ||||    ||||||||||||| |    
T  22791001 attttgatcacatgtattattttttgtaa-attgtgacttttatgattatatagtattgaagagtaatcaatgtttttttt----aagtattttacatgc 22790907  T
Q  292 acataagttttagtataaaatttttgtt 319  Q
    | |||| ||||||||||||  |||||||    
T  22790906 atataaattttagtataaatattttgtt 22790879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 319
Target Start/End: Original strand, 35160397 - 35160494
Alignment:
Q  222 attgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgtt 319  Q
    |||||||  |||||||| ||||| |||  ||||||||||||||| |||||  ||||||||||||||||    |||||||||| |||||| ||||||||    
T  35160397 attgtgatctttataattatatattaactaagagtaatcaatgcatatttctttcaagtattttacatgtttataagttttattataaattttttgtt 35160494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 319
Target Start/End: Original strand, 13644041 - 13644170
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||| ||||||| |||||||| ||| || |||| |||||||||||| |||||| |||   ||||||| |||  |||||||||||||||||||||||| |    
T  13644041 attttaatcacatgtattattttttataa-attgcgacttttataataatataacaat---gagtaataaatatttattttcttcaagtattttacatgc 13644136  T
Q  292 a------cataagttttagtataaaatttttgtt 319  Q
    |       ||||||||||||||||| ||||||||    
T  13644137 atatgagtataagttttagtataaattttttgtt 13644170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 389
Target Start/End: Original strand, 50709779 - 50709909
Alignment:
Q  251 aagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaa 350  Q
    |||||||||||||| || ||||    ||||||||||||| || |||| ||||||||||||   | | || |||||| |||||||||||||| |||| |||    
T  50709779 aagagtaatcaatgtttttttt----aagtattttacatgcatataaattttagtataaa---tattttattaacgtatcttagccgtatcgtatcctaa 50709871  T
Q  351 atttaataaatttcaagtattcgtgtacccgtatcgtat 389  Q
     ||||| |||||||  |||| || |||||||||||||||    
T  50709872 ttttaa-aaatttcgtgtatccgcgtacccgtatcgtat 50709909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 51898580 - 51898497
Alignment:
Q  318 ttgttaacgaatcttagccgtatcatatcttaaatttaataaatttcaagtattcgtgtacccgtatcgtataatatccgcaccc 402  Q
    |||||||||||||||| |||||||||||| ||||||| | |||||||| |||| | ||||| ||||| ||||  || ||||||||    
T  51898580 ttgttaacgaatcttaaccgtatcatatcctaaatttta-aaatttcacgtatccatgtactcgtattgtatcgtacccgcaccc 51898497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 389
Target Start/End: Complemental strand, 46594056 - 46593948
Alignment:
Q  277 aagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaataaatttcaagtattcgtgt 376  Q
    ||||||||||||| || |||| ||||||||||||   | | ||||||||| |||||| | ||||| |||| ||| ||||| |||||||  |||| |||||    
T  46594056 aagtattttacatgcatataaattttagtataaa---tattttgttaacgtatcttaactgtatcgtatcctaattttaa-aaatttcgcgtatccgtgt 46593961  T
Q  377 acccgtatcgtat 389  Q
    |||| ||||||||    
T  46593960 acccatatcgtat 46593948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 40032902 - 40032973
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 264  Q
    ||||||| ||||| ||||||||  ||||| ||||| ||||||||||| || ||||||| ||||||||| ||||    
T  40032902 attttgagcacatgtattattttgtaaaa-attgttacttttataataatttaataatgaagagtaataaatg 40032973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 192 - 354
Target Start/End: Original strand, 40217830 - 40217989
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||| |||| ||||||||||| | |||| ||||||||||||||||| |||||||  | |||||||||||||| ||||||||||||||||||||| ||||    
T  40217830 attttaatcatatatattatttttaaaaaaattgtgacttttataataatataatcttgaagagtaatcaatgtttattttcttcaagtattttatatac 40217929  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattt 354  Q
    | |||||||||||||||||   | | ||||||||| |||||||||||||| |||| |||||||    
T  40217930 atataagttttagtataaa---tattttgttaacgtatcttagccgtatcgtatcctaaattt 40217989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 19721561 - 19721439
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||| |||||| ||||| ||||||||||| ||| |||||| |||||||||||||  | ||||||||||||||||||||||||    
T  19721561 attttgatcacatgtattattt-ttaaaaaattgtaacttttataataatacaataatgaagagtaatcaatattaattttcttcaagtattttacatac 19721463  T
Q  292 acataagttttagtataaaatttt 315  Q
    | |||||||||| |||||| ||||    
T  19721462 atataagttttattataaattttt 19721439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 217 - 319
Target Start/End: Original strand, 45661959 - 45662061
Alignment:
Q  217 aaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaattttt 316  Q
    |||| ||||||||||||||||| |||||||||| || ||||||||||| | ||||||||||| |||||||||| || |||||||||||||||||| ||||    
T  45661959 aaaaaattgtgacttttataataatataataatgaaaagtaatcaatgatgattttcttcaaatattttacatgcatataagttttagtataaaaatttt 45662058  T
Q  317 gtt 319  Q
    |||    
T  45662059 gtt 45662061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 346
Target Start/End: Complemental strand, 7208377 - 7208226
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| ||| |||| |||||| ||||  | ||||||||| |||| ||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  7208377 attttgatcacatgtatcattt-ttaaaaaattgatagttttataataatatgataatgaagagtaatcaatgtttattttcttcaaatattttacatac 7208279  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatc 346  Q
    | ||||||||||| ||  ||||||| ||||||| | ||| || ||||||| ||||    
T  7208278 atataagttttaggat--aattttttttgttaatgtatcctaaccgtatcgtatc 7208226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 229 - 319
Target Start/End: Original strand, 22588307 - 22588397
Alignment:
Q  229 cttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgtt 319  Q
    |||||||||| |||||| ||| |||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||  ||||||||    
T  22588307 cttttataataatataacaatgaagagtaatcaatgtttattttcttcaagtattttatatacatataagttttagtataatttttttgtt 22588397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 222 - 304
Target Start/End: Complemental strand, 28101831 - 28101749
Alignment:
Q  222 attgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttag 304  Q
    |||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  28101831 attgtgacatttatactaatataataataaagagtaatcaatgcttattttcttcaagtattttgcatgcatataagttttag 28101749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 196 - 389
Target Start/End: Original strand, 2295645 - 2295832
Alignment:
Q  196 tgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacat 295  Q
    ||||||||| ||| |||| |||||| ||||| ||||||||||| ||| |||||| ||||||||| |||| | ||||||||||||||||||| ||||| ||    
T  2295645 tgatcacatgtataattt-ttaaaaaattgtaacttttataataatacaataatgaagagtaattaatgttgattttcttcaagtattttatatacatat 2295743  T
Q  296 aagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaataaatttcaagtattcgtgtacccgtatcgtat 389  Q
    |||||| | |||||    ||| ||||||||| ||| || ||||||| |||| ||||||||| |||  ||  |||| || |||||||||||||||    
T  2295744 aagttt-attataa----ttttttgttaacgtatcctaaccgtatcgtatcctaaatttaaaaaaaatcgtgtatccgcgtacccgtatcgtat 2295832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 2242737 - 2242614
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||| ||   | ||||| ||||||||||| ||| |||||| ||||||||||  || | ||||||||||||||||||||||||    
T  2242737 attttgatcacatgtattatttttttttaaattgtaacttttataataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatac 2242638  T
Q  292 acataagttttagtataaaatttt 315  Q
    | |||||||||| |||||| ||||    
T  2242637 atataagttttattataaattttt 2242614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 215 - 286
Target Start/End: Complemental strand, 10037781 - 10037710
Alignment:
Q  215 ttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtatttta 286  Q
    |||||| ||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  10037781 ttaaaaaattatgacttttataataatataataataaagagtaatcaatgctaattttcttcaagtatttta 10037710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 194 - 319
Target Start/End: Complemental strand, 47922856 - 47922732
Alignment:
Q  194 tttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacac 293  Q
    ||||||||||| |||||||| ||||||   ||  ||||||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||| |||||     
T  47922856 tttgatcacatgtattattt-ttaaaaatctgaaacttttataataatacaataatgaagagtaatcaatgcttattttcttcaaatattttagatacat 47922758  T
Q  294 ataagttttagtataaaatttttgtt 319  Q
     || |||||| |||||| ||||||||    
T  47922757 gtatgttttattataaattttttgtt 47922732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 192 - 381
Target Start/End: Complemental strand, 15476598 - 15476414
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||  |||||| ||||| ||||||||||| ||| |||||| ||||||||||  || |  |||||||||||||||||||||||    
T  15476598 attttgatcacatgtattattgtttaaaa-attgtaacttttataataatacaataatgaagagtaatcggtgttacttttcttcaagtattttacatac 15476500  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaataaatttcaagtattcgtgtacccg 381  Q
    | |||| ||||| ||||||    || ||||||||| ||| || ||||||  |||| |||||| || ||| |||| |||| || |||||||    
T  15476499 atataaattttattataaa----tttttgttaacgtatcctaaccgtattgtatcctaaattaaaaaaaattcacgtatccgcgtacccg 15476414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 309
Target Start/End: Complemental strand, 53018421 - 53018308
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||| ||||| ||||||| ||||||| ||||| |||||||||||   | |||||| |||||||| ||||| | ||||||||||||||||||||||||    
T  53018421 attttgaccacatgtattatt-cttaaaaaattgtaacttttataat---acaataatgaagagtaaacaatgttaattttcttcaagtattttacatac 53018326  T
Q  292 acataagttttagtataa 309  Q
    | |||||||||| |||||    
T  53018325 atataagttttattataa 53018308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 25059188 - 25059115
Alignment:
Q  244 aataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgtt 319  Q
    |||||| ||||||| |||||| ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||    
T  25059188 aataatgaagagtactcaatgtttattttcttcaagtattttacatacatataa--tttagtataaaatttttgtt 25059115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 354
Target Start/End: Original strand, 6008400 - 6008495
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattt 354  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||||| |||||| |||||||  |||| | |||||||||||||| |||| |||||||    
T  6008400 taattaatgtttattttcttcaagtattttacatacatataagttttaatataaattttttgt--ttaa-gtatcttagccgtatcgtatcctaaattt 6008495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 311
Target Start/End: Original strand, 4776053 - 4776139
Alignment:
Q  226 tgacttttataatgatataataataaagag-taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaa 311  Q
    ||||||||||||| |||||| ||| || || |||||||||||||||||  |||||||||||||||||| |||||||||| |||||||    
T  4776053 tgacttttataataatataacaatgaaaagataatcaatgcttatttttatcaagtattttacatacatataagttttaatataaaa 4776139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 341
Target Start/End: Complemental strand, 22198688 - 22198580
Alignment:
Q  230 ttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaat 329  Q
    |||||| || ||||| || | ||||||||| |||||||||||| ||||||||||||||||  | |||||||||||||||||   | | ||||||||| ||    
T  22198688 ttttatgattatatagtattgaagagtaataaatgcttatttttttcaagtattttacatgtatataagttttagtataaa---tattttgttaacgcat 22198592  T
Q  330 cttagccgtatc 341  Q
    ||||||||||||    
T  22198591 cttagccgtatc 22198580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 308
Target Start/End: Original strand, 44987546 - 44987656
Alignment:
Q  201 acatatattatttcttaaaacattgtgacttttataatgatataata--ataa--agagtaatcaatgcttattttcttcaagtattttacatacacata 296  Q
    |||| |||||||| |||||| |||| |||||||||||| ||||||||  ||||  |||||||||  |||||||||||||||||||||||||||  | |||    
T  44987546 acatgtattattt-ttaaaaaattgcgacttttataataatataatataataataagagtaatcgttgcttattttcttcaagtattttacatgaatata 44987644  T
Q  297 agttttagtata 308  Q
    ||||||||||||    
T  44987645 agttttagtata 44987656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 53586595 - 53586671
Alignment:
Q  268 attttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatct 347  Q
    ||||||||||||||||||||||| | |||||||||||||||||   ||| ||||||||| |||||||||||||| |||||    
T  53586595 attttcttcaagtattttacataaatataagttttagtataaa---ttttttgttaacgtatcttagccgtatcgtatct 53586671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 311
Target Start/End: Original strand, 27675714 - 27675835
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgata---taataataaagagtaatcaatgcttattttcttcaagtattttaca 288  Q
    ||||||||||| | |||||||| |||||| ||| ||||||||||||| |||   |||| || ||||||| |||| | |||||||||||||||||||||||    
T  27675714 attttgatcacgtgtattattt-ttaaaaaattatgacttttataataataatataattatgaagagtactcaaagtttattttcttcaagtattttaca 27675812  T
Q  289 tacacataagttttagtataaaa 311  Q
     | | |||||||||| |||||||    
T  27675813 catatataagttttattataaaa 27675835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 311
Target Start/End: Complemental strand, 4110216 - 4110103
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    |||||||||||||||||| ||| |||||   ||| |||||||||||| |||| |  |||||||||||| ||||  | |||||||||||||||||||||      
T  4110216 attttgatcacatatatttttt-ttaaa---ttgcgacttttataataatattaatataaagagtaatgaatg--tgttttcttcaagtattttacatgt 4110123  T
Q  292 acataagttttagtataaaa 311  Q
    | ||||||||||||||||||    
T  4110122 atataagttttagtataaaa 4110103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 311
Target Start/End: Complemental strand, 35823356 - 35823233
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataa--taa---agagtaatcaatgcttattttcttcaagtatttta 286  Q
    ||||||||||||| |||||||| |||||| ||||||||||||||||| | |||||||  |||   |||||||  |||| | ||||| || ||||||||||    
T  35823356 attttgatcacatgtattattttttaaaa-attgtgacttttataataacataataacgtaacgtagagtaactaatgttgatttttttaaagtatttta 35823258  T
Q  287 catacacataagttttagtataaaa 311  Q
     || || ||||||||||||||||||    
T  35823257 aatgcaaataagttttagtataaaa 35823233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 35103349 - 35103292
Alignment:
Q  206 tattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 264  Q
    |||||||| |||||| ||||| ||||||||||| ||| |||||||||||||||||||||    
T  35103349 tattattttttaaaa-attgtaacttttataataatacaataataaagagtaatcaatg 35103292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 342
Target Start/End: Original strand, 10632299 - 10632443
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||| ||  || |||||||| ||||| || |||||||| | || |||||||||||  | |||| |||||||||||||||| |    
T  10632299 attttgatcacatgtattattttttgtaa-attgtgacatttatgattatataatattgaatagtaatcaatg--tttttttttcaagtattttacatgc 10632395  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatca 342  Q
    | |||| ||||  ||||||   | | ||||||||| || ||||||||||||    
T  10632396 atataaattttcatataaa---tattttgttaacgtatgttagccgtatca 10632443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 309
Target Start/End: Original strand, 45774273 - 45774388
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||| |||   |||| ||||| ||||||||||| ||| |||||| || ||| |||  || | |||||||| ||||||||||||||     
T  45774273 attttgatcacatgtatttttta--aaaaaattgtaacttttataataatacaataatgaatagttatcggtgttaattttcttgaagtattttacatat 45774370  T
Q  292 acataagttttagtataa 309  Q
    | |||||| ||| |||||    
T  45774371 agataagtattattataa 45774388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 54163221 - 54163160
Alignment:
Q  222 attgtgacttttataatgatataataataaagagtaatcaatgcttatttt-cttcaagtat 282  Q
    |||||||||||||| || ||||||| || |||||||||||||| || |||| ||||||||||    
T  54163221 attgtgacttttatgattatataatgatgaagagtaatcaatgttttttttccttcaagtat 54163160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 192 - 407
Target Start/End: Complemental strand, 31113850 - 31113638
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||| ||||||| |||||||| | |||| ||||||||||||||||| | | |||||| |||||||||| ||| |||||||||||||||||||| |||||    
T  31113850 attttcatcacatgtattatttttaaaaaaattgtgacttttataataagacaataatgaagagtaatcgatgtttattttcttcaagtattttccatac 31113751  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaataaatttcaagtattcgtgtacccgtatcgtataa 391  Q
    | ||||||||||||||||||||||   |||||||| ||||  | |||||| |||| ||||||||| ||| |||  |||| || |||||| ||| ||||      
T  31113750 aaataagttttagtataaaatttt---tgttaacgtatctcggacgtatcgtatcctaaatttaaaaaaattcgtgtatccgcgtacccatattgtatcg 31113654  T
Q  392 tatccgcacccatatc 407  Q
    || | |||||||||||    
T  31113653 tacctgcacccatatc 31113638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 192 - 399
Target Start/End: Complemental strand, 32076387 - 32076182
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaag--tattttacat 289  Q
    ||||||||||||| |||||||| |||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||  | |||||||     
T  32076387 attttgatcacatgtattattt-ttaaaaaattgtgatttttataataatataataataaagagtaatcaatgtttattttcttcaagtcttttttacac 32076289  T
Q  290 acacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaataaatttcaagtattcgtgtacccgtatcgtat 389  Q
    ||| || |||||||||||||   |||| || | |||| ||||||| ||||||||||| ||||||||| ||| | || |||| ||| ||  ||||||||||    
T  32076288 acatatgagttttagtataa---tttttttttcaacgtatcttagtcgtatcatatcctaaatttaaaaaaatacatgtatccgtatattcgtatcgtat 32076192  T
Q  390 aatatccgca 399  Q
     ||| |||||    
T  32076191 catacccgca 32076182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 29230932 - 29230810
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||| | |||| ||| | ||||||||||| ||| |||||| |||||||||||||| | ||||||||||||||||||||||||    
T  29230932 attttgatcacatgtattattt-tgaaaaaattataacttttataataatacaataatgaagagtaatcaatgttaattttcttcaagtattttacatac 29230834  T
Q  292 acataagttttagtataaaatttt 315  Q
    | |||||||||| |||||| ||||    
T  29230833 atataagttttattataaattttt 29230810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 192 - 407
Target Start/End: Complemental strand, 19099903 - 19099692
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||| | | |||| ||||| |||||| |||| ||| |||||| ||||||||||  || | ||||||||||||||||||||||||    
T  19099903 attttgatcacatgtattatatttaaaaaaattgtaacttttttaataatacaataatgaagagtaatcggtgttaattttcttcaagtattttacatac 19099804  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaataaatttcaagtattcgtgtacccgtatcgtataa 391  Q
    | |||||||||| ||||||    || ||||||||| ||| || ||||||| |||| ||||||| | ||| |||  ||||    ||||||||||||||| |    
T  19099803 atataagttttactataaa----tttttgttaacgtatcataaccgtatcgtatcctaaattttaaaaaattcgcgtatctacgtacccgtatcgtatca 19099708  T
Q  392 tatccgcacccatatc 407  Q
    ||||| ||||| ||||    
T  19099707 tatccacacccgtatc 19099692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 354
Target Start/End: Original strand, 7057323 - 7057435
Alignment:
Q  240 atataataataaagagtaatcaatgcttattttcttcaa-gtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgt 338  Q
    |||||||||  |||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||   ||| ||||| |||||| ||||    
T  7057323 atataataaggaagagtaatcaatgcttattttcttcaaagtattttacatacatataaattttagtataaaattt---ttgctaacgtatcttaaccgt 7057419  T
Q  339 atcatatcttaaattt 354  Q
    ||| |||| |||||||    
T  7057420 atcgtatcctaaattt 7057435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 192 - 319
Target Start/End: Complemental strand, 28470178 - 28470050
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgc-ttattttcttcaagtattttacata 290  Q
    ||||| ||||||| |||||||| |||||| ||||||||||||||| | |||||||||| |||| |||||||| | || |||| |||||||||||||||||    
T  28470178 attttaatcacatgtattattt-ttaaaaaattgtgacttttatattaatataataatgaagaataatcaatactttttttttttcaagtattttacata 28470080  T
Q  291 cacataagtttta-gtataaaatttttgtt 319  Q
    || |||| ||||| ||||||||||||||||    
T  28470079 catataaattttaggtataaaatttttgtt 28470050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 2627884 - 2627789
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattt 354  Q
    |||| |||| |||||||||| |||||||||||||||| ||||||||||||||||||||||   |||||||| |||||| ||||||| |||| |||||||    
T  2627884 taattaatgtttattttcttgaagtattttacatacatataagttttagtataaaatttt---tgttaacgtatcttaaccgtatcgtatcctaaattt 2627789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 319
Target Start/End: Complemental strand, 8802664 - 8802538
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||| ||||||| | |||||| |||||| | ||||| ||||||||| |||||||||| ||||||||| |||||||||||| || || ||||||||||      
T  8802664 atttttatcacatgttttattt-ttaaaaaagtgtgaattttataataatataataatgaagagtaataaatgcttattttttttaaatattttacatgt 8802566  T
Q  292 acataagttttagtataaaatttttgtt 319  Q
    | ||||||||||||||||  ||||||||    
T  8802565 atataagttttagtataatttttttgtt 8802538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 39700834 - 39700747
Alignment:
Q  230 ttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttg 317  Q
    ||||||||| |||||||||| ||||| |||||||||||||||| ||||||| |||||||| || |||||||||||| ||||| |||||    
T  39700834 ttttataataatataataatgaagagcaatcaatgcttatttttttcaagtgttttacatgcatataagttttagtttaaaaattttg 39700747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 192 - 319
Target Start/End: Complemental strand, 16755926 - 16755799
Alignment:
Q  192 attttgatcacatatattatttctta-aaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacata 290  Q
    |||||||||||||  ||||||| ||  ||| ||||| ||||||||||| |||||| ||| |||||||||||||||||||||||||| |||| | ||| |     
T  16755926 attttgatcacatgcattattttttttaaaaattgtaacttttataataatataacaatgaagagtaatcaatgcttattttcttctagta-tgtacgtg 16755828  T
Q  291 cacataagttttagtataaaatttttgtt 319  Q
    || |||| |||||||||||| ||||||||    
T  16755827 catataaattttagtataaattttttgtt 16755799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 354
Target Start/End: Original strand, 8229486 - 8229581
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattt 354  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||||| ||||||   ||| || |||||| ||||||| |||||| |||| |||||||    
T  8229486 taattaatgtttattttcttcaagtattttacatacatataagttttaatataaa---ttttttattaacgtatcttagtcgtatcgtatcctaaattt 8229581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 34764591 - 34764495
Alignment:
Q  256 taatcaatgcttattttcttcaagtatttt--acatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatt 353  Q
    ||||||||| ||||||||||||||||||||  ||||| | |||||||||||||||||| |    ||||||||| ||||||| |||||| |||||||||||    
T  34764591 taatcaatgtttattttcttcaagtattttacacatatatataagttttagtataaaaat----ttgttaacgtatcttagacgtatcgtatcttaaatt 34764496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 222 - 402
Target Start/End: Original strand, 39935914 - 39936091
Alignment:
Q  222 attgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgt 321  Q
    ||||||||||||||||| |||||||||||  |||||||||||| |||||| |||||||| |||| ||  || || |||||||||||||||  |   ||||    
T  39935914 attgtgacttttataataatataataatagggagtaatcaatgtttatttccttcaagt-tttttcactcatatgagttttagtataaaaagt---ttgt 39936009  T
Q  322 taacgaatcttagccgtatcatatcttaaa-tttaataaatttcaagtattcgtgtacccgtatcgtataatatccgcaccc 402  Q
     |||| |||||||| ||||| |||| |||| ||||| ||| |||| |||| || |||| |||||| |||  || ||||||||    
T  39936010 caacgtatcttagctgtatcgtatcctaaattttaaaaaaattcacgtatccgcgtactcgtatcatatcgtacccgcaccc 39936091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 31210705 - 31210624
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttct 274  Q
    ||||||||||||| |||| ||| | |||||||| ||||||||||||| |||||||||| ||||||||  ||||||||||||||    
T  31210705 attttgatcacatgtatttttt-tcaaaacattttgacttttataataatataataatgaagagtaactaatgcttattttct 31210624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 27925795 - 27925856
Alignment:
Q  242 ataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagtttta 303  Q
    |||||||| ||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||    
T  27925795 ataataatgaagggtagtcaatgcttatttttttcaagtattttacatacatataagtttta 27925856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 428
Target Start/End: Original strand, 26565152 - 26565320
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattta 355  Q
    ||||||||| |  ||||| ||||||||||||||||||  ||||||||||||| ||||||   ||||||||| |||||| | ||||| |||| |||||||     
T  26565152 taatcaatgttcgttttcatcaagtattttacatacatttaagttttagtattaaattt---ttgttaacgtatcttaactgtatcgtatcctaaatttt 26565248  T
Q  356 ataaatttcaagtattcgtgtacccgtatcgtataatatccgcacccatatcacatattcgagcttcataaga 428  Q
      ||| |||  |||| |||||| |||||| ||||  || |||||| |||||| ||||| ||  ||||||||||    
T  26565249 taaaaattcgtgtatccgtgtatccgtattgtatcttacccgcacacatatc-catatccggccttcataaga 26565320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 244 - 340
Target Start/End: Original strand, 36906953 - 36907046
Alignment:
Q  244 aataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtat 340  Q
    |||||| |||||||||  || ||||||||||||||| ||||||||| || |||| |||||||||||||  |   ||||||||| |||||||||||||    
T  36906953 aataatgaagagtaattgatccttattttcttcaagaattttacatgcatataaattttagtataaaaaat---ttgttaacgtatcttagccgtat 36907046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 36906865 - 36906930
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaat 259  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||||| ||| |||||| |||||||||    
T  36906865 attttgatcatatatattattt-ttaaaa-attgtgacttttataataatagaataatgaagagtaat 36906930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 355
Target Start/End: Original strand, 39329734 - 39329816
Alignment:
Q  269 ttttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattta 355  Q
    |||| ||||||||| || |||||| ||||||||||||||||||    | ||||||||| || ||||||||||| |||||||||||||    
T  39329734 tttttttcaagtatatt-catacatataagttttagtataaaa---atcttgttaacgtattttagccgtatcgtatcttaaattta 39329816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 41368919 - 41368979
Alignment:
Q  228 acttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttaca 288  Q
    ||||||||||| | | |||||| |||||| || |||||||||||||||||| |||||||||    
T  41368919 acttttataataagaaaataatgaagagtgattaatgcttattttcttcaactattttaca 41368979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 34511046 - 34511099
Alignment:
Q  266 ttattttcttcaagtattttacatacacataagttttagtataaaatttttgtt 319  Q
    ||||||| ||||||||||||| ||| | | ||||||||||||| ||||||||||    
T  34511046 ttatttttttcaagtattttaaatatatacaagttttagtatagaatttttgtt 34511099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 192 - 311
Target Start/End: Complemental strand, 47843622 - 47843503
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||| | |||| |||||||||||||||||  ||||||||| ||| |||||||||| ||||||||||||||||||||||||||    
T  47843622 attttgatcacatgtattatttataaaaaaattgtgacttttataatagtataataatgaagggtaatcaatgtttattttcttcaagtattttacatac 47843523  T
Q  292 acataagttttagtataaaa 311  Q
    | |||||||||| |||||||    
T  47843522 atataagttttattataaaa 47843503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 192 - 319
Target Start/End: Original strand, 45492440 - 45492566
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||| ||||||| |||||||| |||||| ||| ||||||||||||| | |||||||| ||||||||||||||  |||||||||||||||||||||||||    
T  45492440 attttcatcacatgtattattt-ttaaaaaattatgacttttataataagataataatgaagagtaatcaatgtatattttcttcaagtattttacatac 45492538  T
Q  292 acataagttttagtataaaatttttgtt 319  Q
    | ||||||||| ||||||| ||||||||    
T  45492539 aaataagttttggtataaattttttgtt 45492566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 192 - 317
Target Start/End: Complemental strand, 2185596 - 2185471
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagta-ttttacata 290  Q
    ||||| ||||||| |||||||| |||||| ||||||||||||||||| | |||||||| |||||||||||||| |||||||||||||||| |||||||||    
T  2185596 attttcatcacatgtattattttttaaaa-attgtgacttttataattagataataatgaagagtaatcaatgtttattttcttcaagtatttttacata 2185498  T
Q  291 cacataagttttagtataaaatttttg 317  Q
    || ||| ||||| ||||||||||||||    
T  2185497 caaatatgttttggtataaaatttttg 2185471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 256 - 408
Target Start/End: Complemental strand, 25310802 - 25310653
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattta 355  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| ||||   ||||||||| |||||| | ||||| |||| ||||||||    
T  25310802 taatcaatgtttattttcttcaaatattttacatacatataagttttagtataatattt---ttgttaacgtatcttaactgtatcgtatcctaaattta 25310706  T
Q  356 ataaatttcaagtattcgtgtacccgtatcgtataatatccgcacccatatca 408  Q
    | ||| ||| ||||| ||||| ||| ||||||||  || | ||||||||||||    
T  25310705 aaaaaattcgagtatccgtgtgcccatatcgtatcgtaccggcacccatatca 25310653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 192 - 292
Target Start/End: Complemental strand, 3751349 - 3751251
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    |||||||| |||| |||| ||||||||||  |||||||||||||||| |||||||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  3751349 attttgattacatgtattttttcttaaaa--ttgtgacttttataataatataataatgaagaataatcaatgattattttcttcaagtattttacatac 3751252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 319
Target Start/End: Complemental strand, 22542790 - 22542665
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    |||||||| | || |||||||| |||||| ||||||||||||||||  |||||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  22542790 attttgattagatgtattattt-ttaaaaaattgtgacttttataagaatataataatgaagagtaatcaatgtttattttcttcaagtattttatatac 22542692  T
Q  292 acataagttttagtataaaatttttgtt 319  Q
    |  ||||||||| |||| | ||||||||    
T  22542691 a-ttaagttttattatatattttttgtt 22542665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 356
Target Start/End: Complemental strand, 42040311 - 42040153
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| ||||||||  ||||| ||| | ||||||||||| ||| |||||| |||||||||||||| | |||||||||||||| |||||||||    
T  42040311 attttgatcacatgtattattttctaaaa-attataacttttataataatacaataatgaagagtaatcaatgttaattttcttcaagta-tttacatac 42040214  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaa 356  Q
    | |||||||||| ||||||    || ||||||||| ||| || ||||||| |||| |||||||||    
T  42040213 atataagttttattataaa----tttttgttaacgtatcctaaccgtatcgtatcctaaatttaa 42040153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 311
Target Start/End: Original strand, 43728194 - 43728312
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||| | |||| || | |||||||||||| |||||||||| ||||||||||| || |||||||||| |||||||| ||||||    
T  43728194 attttgatcacatgtattatttttcaaaa-atcgcgacttttataataatataataattaagagtaatcagtgtttattttctttaagtatttcacatac 43728292  T
Q  292 acataagttttagtataaaa 311  Q
    | ||||| ||||||||||||    
T  43728293 atataagatttagtataaaa 43728312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 43495677 - 43495582
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattt 354  Q
    ||||||||| ||||||||||||  ||||||||||||| ||||||||||||||||||||||   |||||||| |||||| |||||| |||||||||||||    
T  43495677 taatcaatgtttattttcttcagatattttacatacatataagttttagtataaaatttt---tgttaacgtatcttaaccgtattatatcttaaattt 43495582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 354
Target Start/End: Original strand, 48153226 - 48153321
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattt 354  Q
    ||||||||  |||||| |||||||||||||||||||| |||| |||||||||||||||||||||   |||  || || ||||||||||||| |||||||    
T  48153226 taatcaatatttatttacttcaagtattttacatacatataaattttagtataaaatttttgtt---aacatattttggccgtatcatatcctaaattt 48153321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 260 - 356
Target Start/End: Original strand, 40837273 - 40837367
Alignment:
Q  260 caatgcttattttcttcaagtatttt-acatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaa 356  Q
    ||||| |||||||||||||||||||| ||||||| |||||||||||||||||   ||| ||||||| | |||||| ||||||| |||| |||||||||    
T  40837273 caatgtttattttcttcaagtatttttacatacatataagttttagtataaa---ttttttgttaatgtatcttaaccgtatcgtatcctaaatttaa 40837367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 315
Target Start/End: Complemental strand, 45648080 - 45647961
Alignment:
Q  195 ttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacaca 294  Q
    |||||| ||| |||||||| |||||| ||| | |||||| |||| ||| |||||| || |||||||| |  | ||||||||||||||||||||||| | |    
T  45648080 ttgatcgcatgtattattt-ttaaaaaattataacttttttaataatacaataatgaacagtaatcagttttaattttcttcaagtattttacatataga 45647982  T
Q  295 taagttttagtataaaatttt 315  Q
    ||||||||| |||||| ||||    
T  45647981 taagttttattataaattttt 45647961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 385
Target Start/End: Complemental strand, 9229482 - 9229298
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||| ||  || || | ||||||||| || ||||| |  | |||||||||||||| || ||||    |||||||||||||||    
T  9229482 attttgatcacatgtattattttttgtaa-atcgcgacttttatgattatatagttttgaagagtaatcaatgtttttttt----aagtattttacatac 9229388  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaataaatttcaagtattcgtgtacccgtatc 385  Q
    | |||| ||||||||||||   |   ||||||||| |||||||||||||| |||| ||| ||||| |||||||  |||| || |||||||||||    
T  9229387 atataaattttagtataaa---taatttgttaacgtatcttagccgtatcgtatcataattttaa-aaatttcgcgtatccgcgtacccgtatc 9229298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 31397011 - 31396922
Alignment:
Q  222 attgtgacttttataatgatataataataaagagtaatcaatgctta-ttttcttcaagtattttacatacacataagttttagtataaa 310  Q
    |||||||||||||| || |||||  | | ||||| || ||||||||| |||| ||||||||||||||||||| |||| ||| ||||||||    
T  31397011 attgtgacttttatgattatatagcattgaagagaaaccaatgcttagtttttttcaagtattttacatacatataaatttcagtataaa 31396922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 311
Target Start/End: Original strand, 7858214 - 7858257
Alignment:
Q  268 attttcttcaagtattttacatacacataagttttagtataaaa 311  Q
    |||||||||||||||||||||| || |||||||||| |||||||    
T  7858214 attttcttcaagtattttacatgcatataagttttaatataaaa 7858257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 319
Target Start/End: Original strand, 22201378 - 22201505
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttaca--t 289  Q
    ||||||||||||| ||||||||   |||| ||||| |||| |||||| | |||| ||| ||| |||| |||||||||||||||| |  ||||||| |  |    
T  22201378 attttgatcacatgtattattta--aaaaaattgtaacttgtataataacataacaatgaagggtaaccaatgcttattttctttatatattttagatgt 22201475  T
Q  290 acacataagttttagtataaaatttttgtt 319  Q
    | | |||||||||||||||||  |||||||    
T  22201476 atatataagttttagtataaacattttgtt 22201505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 319
Target Start/End: Complemental strand, 22236443 - 22236316
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttaca--t 289  Q
    ||||||||||||| ||||||||   |||| ||||| |||| |||||| | |||| ||| ||| |||| |||||||||||||||| |  ||||||| |  |    
T  22236443 attttgatcacatgtattattta--aaaaaattgtaacttgtataataacataacaatgaagggtaaccaatgcttattttctttatatattttagatgt 22236346  T
Q  290 acacataagttttagtataaaatttttgtt 319  Q
    | | |||||||||||||||||  |||||||    
T  22236345 atatataagttttagtataaacattttgtt 22236316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 203 - 311
Target Start/End: Original strand, 26079541 - 26079648
Alignment:
Q  203 atatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagtttt 302  Q
    ||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||||  | |||||||||||||||||||||| || |||||||||    
T  26079541 atatattattttttaaaa-attgtgacttttataataatataataatgaagagtaatcaattgtgattttcttcaagtattttacattcatataagtttt 26079639  T
Q  303 agtataaaa 311  Q
    |||||||||    
T  26079640 agtataaaa 26079648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 192 - 319
Target Start/End: Complemental strand, 16591280 - 16591152
Alignment:
Q  192 attttgatcacatatattatttcttaaaac-attgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacata 290  Q
    ||||||||||||| ||||||||   ||||  |||| || ||||||||| |||||||||| ||||||||||||| || ||||||||||||||||||||||     
T  16591280 attttgatcacatctattattttaaaaaaagattgcgagttttataataatataataatgaagagtaatcaatactgattttcttcaagtattttacatg 16591181  T
Q  291 cacataagttttagtataaaatttttgtt 319  Q
    || |||||||||| |||||||||||||||    
T  16591180 catataagttttattataaaatttttgtt 16591152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 230 - 354
Target Start/End: Complemental strand, 11755531 - 11755410
Alignment:
Q  230 ttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaat 329  Q
    |||||||||  ||||||||| |||||||||||||| |||||||||||||||||||||||| | ||||||||||| |||||||  |   ||||||||| ||    
T  11755531 ttttataatagtataataatcaagagtaatcaatgtttattttcttcaagtattttacatgcgcataagttttaatataaaaaat---ttgttaacgtat 11755435  T
Q  330 cttagccgtatcatatcttaaattt 354  Q
    |||||| |||||||||| |||||||    
T  11755434 cttagcagtatcatatcctaaattt 11755410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 192 - 319
Target Start/End: Complemental strand, 24728409 - 24728275
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaa--------gagtaatcaatgcttattttcttcaagtatt 283  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||| | |||||||| ||        |||||||| ||| ||||||||||||||||||    
T  24728409 attttcatcacatatattattt-ttaaaaaattgtgacttttataataagataataattaaataatgaagagtaatcgatgtttattttcttcaagtatt 24728311  T
Q  284 ttacatacacataagttttagtataaaatttttgtt 319  Q
    ||||||||| ||||||||||||||||| ||||||||    
T  24728310 ttacatacaaataagttttagtataaattttttgtt 24728275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 31431147 - 31431065
Alignment:
Q  226 tgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtata 308  Q
    ||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  31431147 tgacttttataataatataatcataaagattaatcaatgcttattttcttcaagtattttacatgcatataagttttagtata 31431065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 192 - 353
Target Start/End: Original strand, 9410137 - 9410292
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| ||| |||| |||||| ||||| ||||||| ||| ||| |||||| |||||||||||||| | |||||||||||||||||| |||||    
T  9410137 attttgatcacatgtataattt-ttaaaa-attgtaacttttacaataatacaataatgaagagtaatcaatgttaattttcttcaagtatttttcatac 9410234  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatt 353  Q
    | |||||||||| |||||    ||| ||||||||| |||||| ||||||| |||| ||||||    
T  9410235 atataagttttattataa----ttttttgttaacgtatcttaaccgtatcgtatcctaaatt 9410292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 242 - 319
Target Start/End: Original strand, 13003563 - 13003640
Alignment:
Q  242 ataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgtt 319  Q
    |||||||| |||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||    
T  13003563 ataataatgaagagtaatcaatgtttattttcttcaaatattttacatacatataagttttagtataaattttttgtt 13003640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 354
Target Start/End: Complemental strand, 11789227 - 11789072
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||| |||||| ||| | ||||||||||| ||| |||||| |||||||  ||||| | ||||||||| | ||||||||||||    
T  11789227 attttgatcacatgtattattt-ttaaaaaattataacttttataataatacaataatgaagagta--caatgttaattttcttcgaatattttacatac 11789131  T
Q  292 acataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattt 354  Q
    | |||||||||| |||||||||    ||||||||| ||| || ||||||| |||| |||||||    
T  11789130 atataagttttattataaaatt----ttgttaacgtatcctaaccgtatcgtatcctaaattt 11789072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 192 - 316
Target Start/End: Complemental strand, 18928414 - 18928291
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||||||||| |||||||| |  ||| ||| ||||||||||| | ||||||||||||||| ||||||||| ||| ||  ||||||||||||||||||    
T  18928414 attttgatcacatgtattatttttgtaaa-attttgacttttatattaatataataataaagaataatcaatgtttacttcattcaagtattttacatac 18928316  T
Q  292 acataagttttagtataaaattttt 316  Q
    |  |||||| ||||||||| |||||    
T  18928315 atttaagttctagtataaatttttt 18928291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 383
Target Start/End: Original strand, 37232050 - 37232236
Alignment:
Q  194 tttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttct-tcaagtattttacataca 292  Q
    |||||||||||||||||||| ||  || ||||||||||||||  | ||||| || | |||||||||||||||||||||| | | ||||||||||||| ||    
T  37232050 tttgatcacatatattattttttgtaa-attgtgacttttatgcttatatagtattgaagagtaatcaatgcttattttttgttaagtattttacatgca 37232148  T
Q  293 cataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaatttaataaatttcaagtattcgtgtacccgta 383  Q
     |||| ||||| ||||||   | | ||||||||| ||||||||| |||| |||||| ||||| | |||||||  |||| | ||||||||||    
T  37232149 tataaattttaatataaa---tattttgttaacgtatcttagccatatcgtatcttgaattttaaaaatttcgcgtatccatgtacccgta 37232236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 23877289 - 23877194
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattt 354  Q
    |||| |||| |||||||||||||||||||||| |||| ||||||| |||||||||   ||| ||||||||| |||||||||||||| |||| |||||||    
T  23877289 taattaatgtttattttcttcaagtattttacttacatataagttgtagtataaa---ttttttgttaacgtatcttagccgtatcgtatcctaaattt 23877194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 18322071 - 18322130
Alignment:
Q  251 aagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaa 311  Q
    ||||||||||||||||||||| ||||||||||||||||| || |||||||||| |||||||    
T  18322071 aagagtaatcaatgcttattt-cttcaagtattttacatgcatataagttttaatataaaa 18322130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 24888596 - 24888505
Alignment:
Q  217 aaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaa 311  Q
    |||| ||||||||||||||||| | |||||| | |||||||||| | | ||||||||   |||||||||||||||| ||| ||||||||||||||    
T  24888596 aaaaaattgtgacttttataataacataatagtgaagagtaatcgaagtttattttc---aagtattttacatacaaataggttttagtataaaa 24888505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 300
Target Start/End: Complemental strand, 17748799 - 17748755
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagtt 300  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||    
T  17748799 taatcaatgtttattttcttcaagtattttacatacatataagtt 17748755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 304
Target Start/End: Original strand, 32856214 - 32856262
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttag 304  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||||||||    
T  32856214 taatcaatgtttattttgttcaagtattttacatacatataagttttag 32856262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 319
Target Start/End: Original strand, 14180429 - 14180495
Alignment:
Q  252 agagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgtt 319  Q
    ||||||||||||||||||||| |||||||||||||||  || |||| ||||||||||||  |||||||    
T  14180429 agagtaatcaatgcttatttt-ttcaagtattttacacgcatataaattttagtataaatattttgtt 14180495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 12007029 - 12007070
Alignment:
Q  230 ttttataatgatataataataaagagtaatcaatgcttattt 271  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  12007029 ttttataataatataataatcaagagtaatcaatgcttattt 12007070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 11991016 - 11991087
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatg 264  Q
    ||||||||||||  | |||||| | |||| ||||||||||||||||| | |||||||| ||||||||||||||    
T  11991016 attttgatcacacgttttattt-taaaaaaattgtgacttttataataaaataataatgaagagtaatcaatg 11991087  T

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Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 25430316 - 25430407
Alignment:
Q  217 aaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaa 311  Q
    |||| |||||| |||||||||| | |||||||| | |||||||| | | ||||||||   |||||||||||||| | ||| ||||||||||||||    
T  25430316 aaaaaattgtgtcttttataataaaataataatgacgagtaatcgaagtttattttc---aagtattttacatagaaataggttttagtataaaa 25430407  T

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Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 9136538 - 9136455
Alignment:
Q  226 tgacttttataatgatataataataaagagtaatcaatgctta-ttttcttcaagtattttacatacacataagttttagtata 308  Q
    |||||||||| || ||||| || | ||||| |||||||||||| |||| || ||||||||||||| || |||| ||||||||||    
T  9136538 tgacttttatgattatatagtattgaagagaaatcaatgcttattttttttaaagtattttacatgcatataaattttagtata 9136455  T

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Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 31332433 - 31332375
Alignment:
Q  222 attgtgacttttataatg--atataataataaagagtaatcaatgcttattttcttcaa 278  Q
    |||||||||||||||||   ||||||| ||||| ||||||||||| |||||||||||||    
T  31332433 attgtgacttttataatattatataatgataaaaagtaatcaatgtttattttcttcaa 31332375  T

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Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 12006989 - 12007031
Alignment:
Q  230 ttttataatgatataataataaagagtaatcaatgcttatttt 272  Q
    |||||||||  ||||||||| ||||||||||||||||||||||    
T  12006989 ttttataatagtataataatcaagagtaatcaatgcttatttt 12007031  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 424
Target Start/End: Original strand, 11991102 - 11991198
Alignment:
Q  328 atcttagccgtatcatatcttaaatttaataaatttcaagtattcgtgtacccgtatcgtataatatccgcacccatatcacatattcgagcttcat 424  Q
    ||||||||| ||||||||||||||||| | |||||||| |||| ||  |||  ||||||||| ||| ||||| |  |||||||| |  |||||||||    
T  11991102 atcttagccatatcatatcttaaattttaaaaatttcacgtatccgcatacttgtatcgtatcatacccgcatctgtatcacatttctgagcttcat 11991198  T

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Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 192 - 297
Target Start/End: Complemental strand, 32340128 - 32340024
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    |||||||| |||| |||||||| |||||| ||||||||||||||||| |||||||||| |||||||| |||||| |||||||||||||||||||||||||    
T  32340128 attttgattacatgtattattt-ttaaaaaattgtgacttttataataatataataatgaagagtaaccaatgcatattttcttcaagtattttacatac 32340030  T
Q  292 acataa 297  Q
    | ||||    
T  32340029 atataa 32340024  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 256 - 407
Target Start/End: Original strand, 7435016 - 7435165
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattta 355  Q
    ||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||  ||||||||| ||||||  |||||| |||| |||||||     
T  7435016 taatcaatgtttattttcttcaagtattttacatacatagaagttttagtataaaatttt--ttgttaacgtatcttactcgtatcgtatcctaaatttt 7435113  T
Q  356 ataaatttcaagtattcgtgtacccgtatcgtataatatccgcacccatatc 407  Q
      ||| |||  ||||| |||||||| ||||||||  || |||||||||||||    
T  7435114 gaaaaattcgtgtatttgtgtacccctatcgtatcgtacccgcacccatatc 7435165  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 256 - 389
Target Start/End: Complemental strand, 2988054 - 2987924
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgtatcatatcttaaattta 355  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||   | || ||||||||| |||||||||||||| |||| |||||||     
T  2988054 taatcaatgtttattttcttcaagtattttacatacatataaggtttagtataa---tgtttttgttaacgtatcttagccgtatcgtatcctaaatttt 2987958  T
Q  356 ataaatttcaagtattcgtgtacccgtatcgtat 389  Q
      ||| |||| |||| ||||||||||||||||||    
T  2987957 gaaaaattcatgtatccgtgtacccgtatcgtat 2987924  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 30928564 - 30928641
Alignment:
Q  240 atataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttg 317  Q
    |||||||||| ||| |||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  30928564 atataataatgaagggtaatcaatgtttattttcttcaagtattttacatatatataagttttagtataaaatttttg 30928641  T

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Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 22297211 - 22297087
Alignment:
Q  200 cacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacataca------c 293  Q
    ||||| |||||||| |||||| |||| |||||||||||| |||||| |||||||||||||||||| | |||||||||||||||||||||| ||           
T  22297211 cacatgtattattttttaaaa-attgcgacttttataataatataacaataaagagtaatcaatgttcattttcttcaagtattttacatgcataagagt 22297113  T
Q  294 ataagttttagtataaaatttttgtt 319  Q
    ||||||||||||||||| ||||||||    
T  22297112 ataagttttagtataaattttttgtt 22297087  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 215 - 318
Target Start/End: Original strand, 22054330 - 22054429
Alignment:
Q  215 ttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaattt 314  Q
    |||||| ||||||||||  ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||   ||||| ||||||||||||||| ||    
T  22054330 ttaaaaaattgtgactt--ataataatataataataaagagtaaccaatgtttattttcttcaagtattttac--tcacatgagttttagtataaaaatt 22054425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 2032208 - 2032083
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatga---tataataataaagagtaatcaatgcttattttcttcaagtattttaca 288  Q
    ||||||||||||| |||||||| |||||| ||||| ||||||||||| |   || |||||| || ||||||||| | | |||||||||||||||||||||    
T  2032208 attttgatcacatgtattattt-ttaaaaaattgtaacttttataataacaatacaataatgaaaagtaatcaacgttaattttcttcaagtattttaca 2032110  T
Q  289 tacacataagttttagtataaaatttt 315  Q
    |||| |||||||||| |||||| ||||    
T  2032109 tacatataagttttattataaattttt 2032083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 389
Target Start/End: Original strand, 8486248 - 8486400
Alignment:
Q  232 ttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatct 331  Q
    |||||||  ||||||||| |||| |||||||||||||||| |||||| ||||||||||  | ||||||||||||||||||      |||||| || ||||    
T  8486248 ttataatagtataataatcaagattaatcaatgcttattt-cttcaactattttacatgaatataagttttagtataaaa----aattgttatcgtatct 8486342  T
Q  332 tagccgtatcatatcttaaatttaataaatttcaagtattcgtgtacccgtatcgtat 389  Q
    |||||||||| |||| ||||||| | ||||||   |||| |  |||||||||||||||    
T  8486343 tagccgtatcgtatcctaaattttaaaaattttgcgtatccacgtacccgtatcgtat 8486400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 315
Target Start/End: Complemental strand, 687937 - 687815
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagag---taatcaatgcttattttcttcaagtattttaca 288  Q
    |||||||||||||  ||||||| |||||| ||||| |||||||||||   | |||||| |||||   ||||||||| | ||||||||||| |||||||||    
T  687937 attttgatcacatgcattattt-ttaaaaaattgtaacttttataat---acaataatgaagagcaataatcaatgttaattttcttcaattattttaca 687842  T
Q  289 tacacataagttttagtataaaatttt 315  Q
    |||| |||| ||||| |||||| ||||    
T  687841 tacatataaattttattataaattttt 687815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 319
Target Start/End: Complemental strand, 6108283 - 6108187
Alignment:
Q  230 ttttataatgatataataataaagagtaatcaatgctta--ttttcttcaagtat-----tttacatacacataagttttagtataaaatttttgtt 319  Q
    ||||||||| |||||||||| ||||||||||||||||||  |||| |||||||||      |||||| || |||| |||||||||||||||||||||    
T  6108283 ttttataataatataataatgaagagtaatcaatgcttacttttttttcaagtatgttacattacatgcatataaattttagtataaaatttttgtt 6108187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 10229642 - 10229702
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaattttt 316  Q
    |||| |||| ||||||| ||||||||||||||||||| ||| ||||||||||||| |||||    
T  10229642 taatgaatgtttattttgttcaagtattttacatacatatatgttttagtataaatttttt 10229702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 385
Target Start/End: Complemental strand, 38376 - 38234
Alignment:
Q  240 atataataataaagagtaatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttttgttgttaacgaatcttagccgta 339  Q
    |||||||||| ||| |||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||  |   ||||||||| ||||||||||||    
T  38376 atataataatgaagggtaatcaatgtttattttcttcaagtattttacatacatataagttttaatataaaaaat---ttgttaacgtatcttagccgta 38280  T
Q  340 tcatatcttaaatttaataaatttcaagtattcgtgtacccgtatc 385  Q
    |  |||| | ||||||| ||| |||  ||||  |||||||||||||    
T  38279 ttttatccttaatttaaaaaaattcgcgtatctgtgtacccgtatc 38234  T

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Target: scaffold0565 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 192 - 297
Target Start/End: Original strand, 8170 - 8274
Alignment:
Q  192 attttgatcacatatattatttcttaaaacattgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtattttacatac 291  Q
    ||||||| ||||| |||||||| |||||| ||| | ||||||||||| ||| |||||| |||||||||||||| | ||||||||||||||||||||||||    
T  8170 attttgaccacatgtattattt-ttaaaaaattataacttttataataatacaataatgaagagtaatcaatgttaattttcttcaagtattttacatac 8268  T
Q  292 acataa 297  Q
    | ||||    
T  8269 atataa 8274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 8300 - 8360
Alignment:
Q  222 attgtgacttttataatgatataataataaagagtaatcaatgcttattttcttcaagtat 282  Q
    ||||||||||||||||| | |||||||| || | |||||||||||||||||||||||||||    
T  8300 attgtgacttttataataacataataatgaaaaataatcaatgcttattttcttcaagtat 8360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 6357 - 6416
Alignment:
Q  256 taatcaatgcttattttcttcaagtattttacatacacataagttttagtataaaatttt 315  Q
    |||| |||| ||||||| ||||||||||||||||||| ||| ||||||||||||| ||||    
T  6357 taatgaatgtttattttgttcaagtattttacatacatatatgttttagtataaattttt 6416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 5935 - 5894
Alignment:
Q  278 agtattttacatacacataagttttagtataaaatttttgtt 319  Q
    ||||||||||| ||| | ||||||||||||||||||||||||    
T  5935 agtattttacaaacatacaagttttagtataaaatttttgtt 5894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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