View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_37 (Length: 440)
Name: NF20665_low_37
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 414
Target Start/End: Original strand, 16700331 - 16700728
Alignment:
| Q |
19 |
ggtgaaaactcactgagtggagcaggagggttccagcacggttttagtgctttatcattttgcttcaatggctttttggttagatgtgaaacggttgcca |
118 |
Q |
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| T |
16700331 |
ggtgaaaacttactgagtggagcaggagggttccagcacggttttagtgctttatcattttgcttcaatggctttttggtaagatgtgaaacggttgcca |
16700430 |
T |
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| Q |
119 |
tgttttcttgagtaactgttacagagtcttgttgggaaacttctgtagcttgaacttcaatcttgacatggtttagtgcaaacaaaaattcttaagtaac |
218 |
Q |
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| T |
16700431 |
tgttttcttgagtaactgttacagagtcttgttgggaaacttctgtagcttgaacttcaatcttgacatggtttagtgcaaacaaaaattcttaagtaac |
16700530 |
T |
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| Q |
219 |
tttgttcaataatccacaagttttacataaccatcatattaatatcacataatccaacaaa--atattataaacaaactattaattagtgtagggttatg |
316 |
Q |
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| T |
16700531 |
tttgttcaataatccaaaagttttacataaccatcatattaatatcacataatccaacaaaatatattataaacaaactattaattagtgtagggttatg |
16700630 |
T |
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| Q |
317 |
caacaaaatgaacatatcatatgaatataatctatgatacattttattccctaatctcaactttttaaaggcattatctcaaacttaaaccaattcca |
414 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16700631 |
caacaaaatgaacatatcatatgaatataatatatgatacattttattccctaatctcaactttttaaaggcattatctcaaacttaaaccaattcca |
16700728 |
T |
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