View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_39 (Length: 429)
Name: NF20665_low_39
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_39 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 26 - 429
Target Start/End: Complemental strand, 5391752 - 5391349
Alignment:
| Q |
26 |
aacgtggaacgctgataagtatgttcactacattcaatgcgatgtctctgaccaaaaagacgtcgaattgaagctctctcccttaactgatgtgacacat |
125 |
Q |
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| T |
5391752 |
aacgtggaacactgataattatgttgactacattcaatgcgatgtctctgatcaaaaagacgttgaattgaagctctctcccttaactgatgtgacacat |
5391653 |
T |
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| Q |
126 |
attttctatgtctcgtggaccagcatgcctacagaggctcaaaactgcgaagttaacagttcaatgttaaggaacgtccttcgagccctcatcccaaata |
225 |
Q |
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| T |
5391652 |
attttctatgtctcgtggaccagcatgcccacagaggctcaaaactgcaaagttaacggttcaatgttaaggaacgtccttcgagccctcatcccaaata |
5391553 |
T |
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| Q |
226 |
ctctgaatctttgtcatgtatcccttcagacgggaatcaagcactactttggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcac |
325 |
Q |
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| T |
5391552 |
ctctgaatctttgtcatgtgtcccttcaaacgggaatcaagcactactttggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcac |
5391453 |
T |
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| Q |
326 |
ggaggatgtgccacgccttgtcacacccaatttctatcacacacaagaggatatcttgctagaagaggttggtaaattaaactaaacaaacaaattattg |
425 |
Q |
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| T |
5391452 |
ggaggatgtgccacgccttgtcacacccaatttctatcacacacaagaggatatcttgctagaagaggttggtaaattaaactaaacaaacaaattattg |
5391353 |
T |
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| Q |
426 |
tcaa |
429 |
Q |
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| T |
5391352 |
tcaa |
5391349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 398
Target Start/End: Complemental strand, 5395570 - 5395191
Alignment:
| Q |
19 |
cacaaccaacgtggaacgctgataagtatgttcactacattcaatgcgatgtctctgaccaaaaagacgtcgaattgaagctctctcccttaactgatgt |
118 |
Q |
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| T |
5395570 |
cacaaccaacgtggaacgctgataagtatgttcactacattcaatgcgatgtctctgaccaaaaagacgtcgaattgaagctctctcccttaactgatgt |
5395471 |
T |
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| Q |
119 |
gacacatattttctatgtctcgtggaccagcatgcctacagaggctcaaaactgcgaagttaacagttcaatgttaaggaacgtccttcgagccctcatc |
218 |
Q |
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| T |
5395470 |
gacacatattttctatgtctcgtggaccagcatgcctacagaggctcaaaactgcgaagttaacggttcaatgttaaggaacgtccttcgagccctcatc |
5395371 |
T |
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| Q |
219 |
ccaaatactctgaatctttgtcatgtatcccttcagacgggaatcaagcactactttggatcctttgaaatagtcggtaagatcaagccccatgagtccc |
318 |
Q |
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| T |
5395370 |
ccaaatactctcaatctttgccatgtgtcccttcaaacaggaactaagcactacctaggatccttcgaaacgatcggtaagatcaaggcccatgagtccc |
5395271 |
T |
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| Q |
319 |
ctttcacggaggatgtgccacgccttgtcacacccaatttctatcacacacaagaggatatcttgctagaagaggttggt |
398 |
Q |
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| T |
5395270 |
ccttcacggaggatgtgccacgccttgtcacacccaatttctattacacacaggaggatatcttgttagaagaggttggt |
5395191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 47 - 395
Target Start/End: Complemental strand, 5401689 - 5401341
Alignment:
| Q |
47 |
tgttcactacattcaatgcgatgtctctgaccaaaaagacgtcgaattgaagctctctcccttaactgatgtgacacatattttctatgtctcgtggacc |
146 |
Q |
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| T |
5401689 |
tgttcactatattcagtgtgatgtctccaatcaaaacgatgttgaattgaagctatcccctttaacagacgtgacccatatattctatgtctcgtggacc |
5401590 |
T |
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| Q |
147 |
agcatgcctacagaggctcaaaactgcgaagttaacagttcaatgttaaggaacgtccttcgagccctcatcccaaatactctgaatctttgtcatgtat |
246 |
Q |
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| T |
5401589 |
agcagacccacggaggctcaaaattgtgaggtgaatggtgccatgttgaggaacgtccttcaagccctaatcccaaatgctccaaatctttcccatgtgt |
5401490 |
T |
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| Q |
247 |
cccttcagacgggaatcaagcactactttggatcctttgaaatagtcggtaagatcaagccccatgagtcccctttcacggaggatgtgccacgccttgt |
346 |
Q |
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| T |
5401489 |
ctcttcagactggtgccaagcactatgtaggacccttcgaaatcatcggtaagatcaaacctcatgagtcccccttcacagaggatgtgccacgcctcga |
5401390 |
T |
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| Q |
347 |
cacacccaatttctatcacacacaagaggatatcttgctagaagaggtt |
395 |
Q |
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| T |
5401389 |
cacacccaatttctattacacattagaggatatcttgttcgaagaggtt |
5401341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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