View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_40 (Length: 426)

Name: NF20665_low_40
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_40
NF20665_low_40
[»] chr3 (3 HSPs)
chr3 (79-407)||(44187643-44187978)
chr3 (20-57)||(45205341-45205378)
chr3 (15-56)||(51698924-51698965)
[»] chr1 (4 HSPs)
chr1 (79-394)||(43095837-43096160)
chr1 (15-58)||(41677289-41677332)
chr1 (21-58)||(15470027-15470064)
chr1 (15-43)||(48470717-48470745)
[»] chr2 (1 HSPs)
chr2 (79-407)||(32726786-32727106)
[»] chr7 (3 HSPs)
chr7 (16-71)||(49069300-49069355)
chr7 (16-57)||(46095015-46095056)
chr7 (26-58)||(3683595-3683627)
[»] chr6 (1 HSPs)
chr6 (209-312)||(10768988-10769091)
[»] chr4 (2 HSPs)
chr4 (15-58)||(26732288-26732331)
chr4 (21-58)||(31559602-31559639)
[»] chr8 (2 HSPs)
chr8 (20-58)||(28756599-28756637)
chr8 (22-75)||(6237803-6237856)
[»] chr5 (1 HSPs)
chr5 (16-58)||(7287155-7287197)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 79 - 407
Target Start/End: Original strand, 44187643 - 44187978
Alignment:
Q  79 tttttatcatcttgactttgatctcttagatcatataatttggagatttctc--------atgatatggcttgcaacaccttttgctgatctatgattct 170  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||        ||| ||||||||||| ||||||||||||||||||||||||    
T  44187643 tttttatcatcttggctttgatctcttagagcatataatttggagatttctccaactgacatggtatggcttgcagcaccttttgctgatctatgattct 44187742  T
Q  171 tttgatctttagtgttttgtctttcccattgccttgaagccatccatctgtcaagccaattccatccccaatggggattgtttggatccataattgtggc 270  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44187743 tttgatccttagtgttttgtccttcccatggccttgaagccatccatctatcaagccaattccatctccaatggggattgtttggatccataattgtggc 44187842  T
Q  271 atctgtaggttttgaagagttcctctatatttgctgttagagaaattaagctataggttattatccatataaaactatttcatgtttgcttatgataaac 370  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44187843 atctgtaggttttgaagagttcctccatgtttgctgttagagaaattaagctataggttattatccatat-aaactatttcatgtttgcttatgataaac 44187941  T
Q  371 cttaaatgaataacttatatgtatagtgtaatcagaa 407  Q
    ||||||||||||| ||||| ||| |||||||||||||    
T  44187942 cttaaatgaataaattataagtacagtgtaatcagaa 44187978  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 45205378 - 45205341
Alignment:
Q  20 gaaaccaaaacaatagagagagaagataaaaatataat 57  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  45205378 gaaaccaaaacaatagagagagaaattaaaaatataat 45205341  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 51698965 - 51698924
Alignment:
Q  15 gcacagaaaccaaaacaatagagagagaagataaaaatataa 56  Q
    ||||| |||||||| |||||||||||||| ||||||||||||    
T  51698965 gcacaaaaaccaaatcaatagagagagaaaataaaaatataa 51698924  T

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Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 79 - 394
Target Start/End: Complemental strand, 43096160 - 43095837
Alignment:
Q  79 tttttatcatcttgactttgatctcttagatcatataatttggagatttctc--------atgatatggcttgcaacaccttttgctgatctatgattct 170  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||||||||||        ||| |||||||||||||||||||| |||||||||||||||    
T  43096160 tttttgtcatcttgattttgatctcttagagcatataatttggagatttctccaactgacatggtatggcttgcaacaccttttcctgatctatgattct 43096061  T
Q  171 tttgatctttagtgttttgtctttcccattgccttgaagccatccatctgtcaagccaattccatccccaatggggattgtttggatccataattgtggc 270  Q
    | ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43096060 tctgatctttagtgttttgtccttcccatggccttgaagccatccatctgtcaagccaattccatccccaatggggattgtttggatccataattgtggc 43095961  T
Q  271 atctgtaggttttgaagagttcctctatatttgctgttagagaaattaagctataggttattatccatataaaactatttcatgtttgcttatgataaac 370  Q
    |||||||| |||||||||||||||| || ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||     
T  43095960 atctgtagcttttgaagagttcctccatgtttgctgttagagaaattaagttatatgttattatccatataaaactatttcatgtttgcttatcataaat 43095861  T
Q  371 cttaaatgaataacttatatgtat 394  Q
    |||||| |||||| ||||||||||    
T  43095860 cttaaaggaataaattatatgtat 43095837  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 41677289 - 41677332
Alignment:
Q  15 gcacagaaaccaaaacaatagagagagaagataaaaatataatg 58  Q
    ||||| |||||||||||||||||||| || ||||||||||||||    
T  41677289 gcacaaaaaccaaaacaatagagagataaaataaaaatataatg 41677332  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 15470027 - 15470064
Alignment:
Q  21 aaaccaaaacaatagagagagaagataaaaatataatg 58  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  15470027 aaaccaaaacaatagagagagaaaataaaaagataatg 15470064  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 48470745 - 48470717
Alignment:
Q  15 gcacagaaaccaaaacaatagagagagaa 43  Q
    |||||||||||||||||||||||||||||    
T  48470745 gcacagaaaccaaaacaatagagagagaa 48470717  T

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Target: chr2 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 79 - 407
Target Start/End: Original strand, 32726786 - 32727106
Alignment:
Q  79 tttttatcatcttgacttt-gatctcttagatcatataatttggagatttctc--------atgatatggcttgcaacaccttttgctgatctatgattc 169  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||        ||| ||||||||||| |||||||||||||||||||||||    
T  32726786 tttttatcatctttacttttgatctcttagagcatataatttggagatttctccaactgacatggtatggcttgcagcaccttttgctgatctatgattc 32726885  T
Q  170 ttttgatctttagtgttttgtctttcccattgccttgaagccatccatctgtcaagccaattccatccccaatggggattgtttggatccataattgtgg 269  Q
    |||||||| ||||||||||||| ||||||| ||||||||||                |||||||||| |||||||||||||||||||||||||| ||| |    
T  32726886 ttttgatccttagtgttttgtccttcccatggccttgaagc----------------caattccatctccaatggggattgtttggatccataactgtag 32726969  T
Q  270 catctgtaggttttgaagagttcctctatatttgctgttagagaaattaagctataggttattatccatataaaactatttcatgtttgcttatgataaa 369  Q
    |||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32726970 catctgtaggttttgaagggttcctccatgtttgctgttagagaaattaagctataggttattatccatat-aaactatttcatgtttgcttatgataaa 32727068  T
Q  370 ccttaaatgaataacttatatgtatagtgtaatcagaa 407  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  32727069 ccttaaatgaataaattataagtatagtgtaatcagaa 32727106  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 49069355 - 49069300
Alignment:
Q  16 cacagaaaccaaaacaatagagagagaagataaaaatataatggatatctgagaga 71  Q
    |||| ||||||||||||||||||||||| ||||||| |||||| | || |||||||    
T  49069355 cacaaaaaccaaaacaatagagagagaaaataaaaacataatgtaaatatgagaga 49069300  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 46095056 - 46095015
Alignment:
Q  16 cacagaaaccaaaacaatagagagagaagataaaaatataat 57  Q
    |||| ||||||| ||||||||||||||| |||||||||||||    
T  46095056 cacaaaaaccaatacaatagagagagaaaataaaaatataat 46095015  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 3683627 - 3683595
Alignment:
Q  26 aaaacaatagagagagaagataaaaatataatg 58  Q
    |||||||||||||||||| ||||||||||||||    
T  3683627 aaaacaatagagagagaaaataaaaatataatg 3683595  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 312
Target Start/End: Original strand, 10768988 - 10769091
Alignment:
Q  209 gccatccatctgtcaagccaattccatccccaatggggattgtttggatccataattgtggcatctgtaggttttgaagagttcctctatatttgctgtt 308  Q
    ||||||||||| || | |||| |||||||||| || ||||||||||||||||||| |||    | | ||| ||||||||| ||| || || |||||||||    
T  10768988 gccatccatctctctaaccaactccatccccagtgaggattgtttggatccataaatgtttggtttatagattttgaagaattcttccatgtttgctgtt 10769087  T
Q  309 agag 312  Q
    ||||    
T  10769088 agag 10769091  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 26732331 - 26732288
Alignment:
Q  15 gcacagaaaccaaaacaatagagagagaagataaaaatataatg 58  Q
    ||||| ||||||||||||||||||||||| ||||||| ||||||    
T  26732331 gcacaaaaaccaaaacaatagagagagaaaataaaaagataatg 26732288  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 31559639 - 31559602
Alignment:
Q  21 aaaccaaaacaatagagagagaagataaaaatataatg 58  Q
    |||||||||||||||||||||||  |||||||||||||    
T  31559639 aaaccaaaacaatagagagagaaagtaaaaatataatg 31559602  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 28756637 - 28756599
Alignment:
Q  20 gaaaccaaaacaatagagagagaagataaaaatataatg 58  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  28756637 gaaaccaaaacaatagagagaaaaaataaaaatataatg 28756599  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 6237803 - 6237856
Alignment:
Q  22 aaccaaaacaatagagagagaagataaaaatataatggatatctgagagaaaat 75  Q
    ||||||| |||||||||||||| |||||||||||||| | || ||| |||||||    
T  6237803 aaccaaagcaatagagagagaaaataaaaatataatgtaaatatgaaagaaaat 6237856  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 7287155 - 7287197
Alignment:
Q  16 cacagaaaccaaaacaatagagagagaagataaaaatataatg 58  Q
    |||| |||||||||||||||||||||||  |||||||||||||    
T  7287155 cacaaaaaccaaaacaatagagagagaaagtaaaaatataatg 7287197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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