View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_42 (Length: 416)
Name: NF20665_low_42
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 14 - 401
Target Start/End: Original strand, 8963757 - 8964144
Alignment:
| Q |
14 |
gaatgaagtatcatttggatatctcacttggaagaatgggaagcatgtggtgaggagctctattgtggtaacaacgcccaattttaatttaatagaaaat |
113 |
Q |
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| T |
8963757 |
gaatgaattatcttttggatatctcacttggaagaatgggaagcatgtggtgaggagccctattgtggtaacaacgcccaattttaatttaatagaaaat |
8963856 |
T |
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| Q |
114 |
tagctcttgttacatttttgtactgaaattttataaaattataggtaacctttataactatttaatctaggcagtaacttttaatagaaatgttgtcctg |
213 |
Q |
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| T |
8963857 |
tagctcttgttacattttggtattgaaattttataaaaatataggtaacctttataactatttaatctagacagtaacttttaatagaaatgttgtcctg |
8963956 |
T |
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| Q |
214 |
atcccaaaattacaagtccatttcagggtggnnnnnnnnncaaaaggcaagaagtgtataatgtgatgctgagtacaatatatgacatttgaactttaat |
313 |
Q |
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| T |
8963957 |
atcccaaaattacaagtccatttcaggttggtttttttttcaaaaggcaagaagattataatgtgatgctgagtacaatatatgacatttgaactttaat |
8964056 |
T |
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| Q |
314 |
attagtatatgattgaactttcttactggtgaattctgtttaaggtattgactaattagatgattttttacagtaagcttctatagtg |
401 |
Q |
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| T |
8964057 |
attagtatatgattgaactttcttactggtgaattctgtttaaggtattgactaattagatgattttttacagtaagcttctatagtg |
8964144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 8975153 - 8975242
Alignment:
| Q |
14 |
gaatgaagtatcatttggatatctcacttggaagaatgggaagcatgtggtgaggagctctattgtggtaacaacgcccaattttaattt |
103 |
Q |
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| T |
8975153 |
gaatgaagtttcttttggatatctcacttggcaggatgggaagcatgtggtaaggagccctattgttgtaacaacccccaatttcaattt |
8975242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 8945326 - 8945238
Alignment:
| Q |
15 |
aatgaagtatcatttggatatctcacttggaagaatgggaagcatgtggtgaggagctctattgtggtaacaacgcccaattttaattt |
103 |
Q |
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| T |
8945326 |
aatgaagtagcttttggttacatcacatggcaggatgggaagcatgtggtgaggagccctattgtggtaactaccaccaatttcaattt |
8945238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 8975385 - 8975457
Alignment:
| Q |
137 |
tgaaattttataaaattataggtaacctttataactatttaatctaggcagtaacttttaatagaaatgttgt |
209 |
Q |
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| T |
8975385 |
tgaaatgttataaaaatattggtaacaattataactatttaatttatgaagtaacttttaatagaaattttgt |
8975457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 270 - 392
Target Start/End: Complemental strand, 16727962 - 16727842
Alignment:
| Q |
270 |
tataatgtgatgctgagtacaatatatgacatttgaactttaatattagtatatgattgaactttcttactggtgaattctgtttaaggtattgactaat |
369 |
Q |
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| T |
16727962 |
tataatgtgatgctgagtaaaatat--gacatttgaacatttatattagtatatgtttgaattttcctattggtgaattatgtttaaggtgtcaactaat |
16727865 |
T |
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| Q |
370 |
tagatgattttttacagtaagct |
392 |
Q |
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| T |
16727864 |
tagatgattttttacagtaagct |
16727842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 17009161 - 17009083
Alignment:
| Q |
164 |
tttataactatttaatctaggcagtaacttttaatagaaatgttgtcctgatcccaaaattacaagtccatttcagggtg |
243 |
Q |
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| T |
17009161 |
tttataactatttaatctttgcagtaacttttaatagaaatgttgtcctaat-ccaagattacaagtcgatttcagggtg |
17009083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 17009040 - 17008937
Alignment:
| Q |
254 |
caaaaggcaagaagtgtataatgtgatgctgagtacaatatatgacatttgaactttaatattagtatatgattgaactttcttactggtgaattctgtt |
353 |
Q |
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| T |
17009040 |
caaaaggtaagaagattataatgtgatgctgagtaaaatat--gacatttgaacatttatattagtatatgtttgaattttcctattggtgaattatgtt |
17008943 |
T |
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| Q |
354 |
taaggt |
359 |
Q |
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|||||| |
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| T |
17008942 |
taaggt |
17008937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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