View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_49 (Length: 393)
Name: NF20665_low_49
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 10 - 374
Target Start/End: Complemental strand, 34317302 - 34316943
Alignment:
| Q |
10 |
gcagagaacggcatgctgagaattattggagaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtatggaaaattct |
109 |
Q |
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| T |
34317302 |
gcagagaacggcatgctgagaattattggagaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtacggaaaattct |
34317203 |
T |
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| Q |
110 |
ggagacagttaagattgccagagaatgctgatttggattcaattaaggctaataaggaaaatggagttcttactttgacatttaataagttgtcacatgg |
209 |
Q |
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| T |
34317202 |
ggagacagttaagattgccagagaatgctgatttggattcaattaaggctaataaggaaaatggagttcttactttgacatttaataagttgtcgcatgg |
34317103 |
T |
|
| Q |
210 |
taagatcaaaggttctagagttgttagcaaggatgaggaggatgagaaatcaggcaagatcaataataatggggatagtagcactgaactttgaaataag |
309 |
Q |
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| T |
34317102 |
taagatcaaaggttc-----ttgttagcaaggatgaggaggatgagaaatcaggcaagatcaataataatggggatagtagcactgaactttgaaataag |
34317008 |
T |
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| Q |
310 |
cttcttaaatctatgtttggtttgaataaagggattttacctaagatttagttgttagtgtgatg |
374 |
Q |
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| T |
34317007 |
ctttttaaatctatgtttggtttgaataaagggattttacctaagatttagttgttagtgtgatg |
34316943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 34 - 374
Target Start/End: Original strand, 34314475 - 34314818
Alignment:
| Q |
34 |
attggagaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtatggaaaattctggagacagttaagattgccagaga |
133 |
Q |
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| T |
34314475 |
attggagaaaggaagaaagaagtggagaagaaaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggagacagcttagattgccggaga |
34314574 |
T |
|
| Q |
134 |
atgctgatttggattcaattaaggctaataaggaaaatggagttcttactttgacatttaataagttgtcacatgg---taagatcaaaggttctagagt |
230 |
Q |
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| T |
34314575 |
atgctgattttgattccgtgaaggctaaggtggaaaatggtgttcttattttgacacttaataagctgtcccatgaatatcagattaaaagtattagagt |
34314674 |
T |
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| Q |
231 |
tgttagcaaggatgaggaggatgagaaatcaggcaagatcaataataatggggatagtagcactgaactttgaaataagcttcttaaatctatgtttggt |
330 |
Q |
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| T |
34314675 |
tgttagcattgataaggagaatgagaaatcaggcaagcttaataatgatggggctaataccactgaactttgaaataagctttttaattctatgtttggt |
34314774 |
T |
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| Q |
331 |
ttgaataaagggattttacctaagatttagttgttagtgtgatg |
374 |
Q |
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| T |
34314775 |
ttgaataaagggatttcacctaggatttggttgttagtgtgatg |
34314818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 34304781 - 34304486
Alignment:
| Q |
12 |
agagaacggcatgctgagaattattggagaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtatggaaaattctgg |
111 |
Q |
| |
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||||||| || |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| | || |||||| ||||||||||| ||| |
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| T |
34304781 |
agagaacagcgtgctgagagttattggagaaaggaagaaagaagtggagaagaaaggtgatcgttggcatagagctgaaagatcatatggaaaattttgg |
34304682 |
T |
|
| Q |
112 |
agacagttaagattgccagagaatgctgatttggattcaattaaggctaataaggaaaatggagttcttactttgacatttaataagttgtcacatggta |
211 |
Q |
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|| || || |||||||| || ||||||||||||||||| | |||||||| | |||||||| ||||||||||||||| ||||||||||||| |||| | |
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| T |
34304681 |
aggcaatttagattgcctgaaaatgctgatttggattctgtgaaggctaagatagaaaatggtgttcttactttgacacttaataagttgtctcatgatc |
34304582 |
T |
|
| Q |
212 |
agatcaaaggttctagagttgttagcaaggatgaggaggatgagaaatcaggcaagatcaataataatggggatagtagcactgaactttgaaata |
307 |
Q |
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|||| ||| || ||||||||||||||| ||||||||| ||||||||||| |||| |||| ||| |||||| || || || ||| |||||||||| |
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| T |
34304581 |
agattaaaagtactagagttgttagcattgatgaggagaatgagaaatcacccaaggtcaacaatgatggggctaataacaatgagctttgaaata |
34304486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 12 - 267
Target Start/End: Original strand, 33426290 - 33426545
Alignment:
| Q |
12 |
agagaacggcatgctgagaattattggagaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtatggaaaattctgg |
111 |
Q |
| |
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||||||| || |||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||| | || |||||| ||||||||||| ||| |
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| T |
33426290 |
agagaacagcgtgctgagagtgattggagaaagaaagaaagaagaggagaaaaaaggtgatcgttggcatagagctgaaagatcatatggaaaattttgg |
33426389 |
T |
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| Q |
112 |
agacagttaagattgccagagaatgctgatttggattcaattaaggctaataaggaaaatggagttcttactttgacatttaataagttgtcacatggta |
211 |
Q |
| |
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|||||||| |||||||| || ||||||||||||||||| ||||||| || | ||||||||| ||||||||||| ||| || ||||||||||||||||| |
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| T |
33426390 |
agacagtttagattgcctgaaaatgctgatttggattcggttaaggccaagatggaaaatggtgttcttactttaacacttcgtaagttgtcacatggta |
33426489 |
T |
|
| Q |
212 |
agatcaaaggttctagagttgttagcaaggatgaggaggatgagaaatcaggcaag |
267 |
Q |
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|||| ||| || ||||| ||||||||| || |||||| |||||||| || ||||| |
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| T |
33426490 |
agattaaaagtactagacttgttagcattgaggaggagaatgagaaagcaagcaag |
33426545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 258
Target Start/End: Complemental strand, 34322928 - 34322710
Alignment:
| Q |
40 |
gaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtatggaaaattctggagacagttaagattgccagagaatgctg |
139 |
Q |
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|||||||||||||||| |||||| ||||||||| |||||| | ||||||||| ||||| ||||||||||| || || |||||||| || |||| || |
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| T |
34322928 |
gaaaggaagaaagaagaagagaaacaaggtgatcattggcatagagttgaaagatcttatgggaaattctggaggcaatttagattgcctgaaaatgttg |
34322829 |
T |
|
| Q |
140 |
atttggattcaattaaggctaataaggaaaatggagttcttactttgacatttaataagttgtcacatggtaagatcaaaggttctagagttgttagcaa |
239 |
Q |
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||||||||||| | |||||||| | ||||||||| || |||||||||||| |||||||||||||||||| ||||||||||||| ||||| | ||||||| |
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| T |
34322828 |
atttggattcagtgaaggctaagatggaaaatggtgtacttactttgacacttaataagttgtcacatgataagatcaaaggtcctagaatggttagcat |
34322729 |
T |
|
| Q |
240 |
ggatgaggaggatgagaaa |
258 |
Q |
| |
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| T |
34322728 |
tgctgaggaggatgagaaa |
34322710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 40 - 238
Target Start/End: Original strand, 34312043 - 34312241
Alignment:
| Q |
40 |
gaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtatggaaaattctggagacagttaagattgccagagaatgctg |
139 |
Q |
| |
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|||||||||||||||| |||||| ||||||||| |||||||| ||||||||| ||||||||||||||||| || || ||||||||||| |||| || |
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| T |
34312043 |
gaaaggaagaaagaagaagagaaacaaggtgatcattggcacagagttgaaagatcttatggaaaattctggaggcaatttagattgccagaaaatgttg |
34312142 |
T |
|
| Q |
140 |
atttggattcaattaaggctaataaggaaaatggagttcttactttgacatttaataagttgtcacatggtaagatcaaaggttctagagttgttagca |
238 |
Q |
| |
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||||||| ||| |||||||||| | ||||||||| || |||||||||||| |||||||||||||||| | ||||| |||||| ||||| | ||||||| |
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| T |
34312143 |
atttggactcagttaaggctaaaatggaaaatggtgtacttactttgacacttaataagttgtcacaagataagactaaaggtcctagaatggttagca |
34312241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 25651417 - 25651237
Alignment:
| Q |
12 |
agagaacggcatgctgagaattattggagaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtatggaaaattctgg |
111 |
Q |
| |
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||||||| || |||| ||| |||||||||||||||| |||||| ||||| ||| ||||||||||||| | |||||||||| ||| ||||||||||||| |
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| T |
25651417 |
agagaacagcgtgctaagagttattggagaaaggaaaaaagaacaggagaacaaaagtgatcgttggcatagagttgaaaggatgtgtggaaaattctgg |
25651318 |
T |
|
| Q |
112 |
agacagttaagattgccagagaatgctgatttggattcaattaaggctaataaggaaaatggagttcttactttgacattt |
192 |
Q |
| |
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||||| | ||||| ||||| |||| |||||||||||| |||||| | || | |||| |||| ||||||||||| |||||| |
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| T |
25651317 |
agacaacttagattaccagaaaatgttgatttggattcgattaagacaaagatggaagatggtgttcttactttaacattt |
25651237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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