View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_5 (Length: 674)
Name: NF20665_low_5
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 608; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 21 - 657
Target Start/End: Complemental strand, 31455152 - 31454514
Alignment:
| Q |
21 |
acatgcatctaaaagtgtaactgaaccacttaatgaatcttccactagcttcccattttgatagtgtaaaagtgcttgttgtgtttgttgagattggaag |
120 |
Q |
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| T |
31455152 |
acatgcatctaaaagtgtaactgaaccacttaatgaatcttccactagcttcccattttgatagtgtaaaagtgcttgttgtgtttgttgagattggaag |
31455053 |
T |
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| Q |
121 |
agttcttccatgcaattgtatagctctgcaagcacaactaaatcactttgaattgtctctgattcaaaacataatgtatttgaaagagattgagatgaag |
220 |
Q |
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| T |
31455052 |
agttcttccatgcaattgtataactcagcaagcacaaccaaatcactttgaattgtctctgattcaaaacataatgtatttgaaagagattgagatgaag |
31454953 |
T |
|
| Q |
221 |
attgtggtttaagatggttcaataatgcttcaactctttgtgaagatgggtgtattcttgttggcaaactaattgatcttaatggttgatgagtagatgg |
320 |
Q |
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| T |
31454952 |
attgtggtttaagatggttcaataatgcttcaactctttgtgaagatgggtgtattcttgttggcaaactaattgatcttaatggttgatgagtagatgg |
31454853 |
T |
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| Q |
321 |
taacattgaaattgtttccatttttcttcttcttcttttgttgtttacttagaagtgcaataaaacaagggttaaatgttgcttgttttgcaattagtgt |
420 |
Q |
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| T |
31454852 |
taacattgaaattgtttccattttttttcttcttcttttgttgtttacttagaagtgcaataaaacaagggttaaatgttgcttgttttgcaattagtgt |
31454753 |
T |
|
| Q |
421 |
ttcttcaatctatttataggaatgtggtaaaagagaattatagaaatttaattatttgagtatt--atatgtgcatgtgatgacaatgtgggtctcccta |
518 |
Q |
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| T |
31454752 |
ttcttcaatctatttataggaatgtggtaaaagagaattatagaaatttaattatttgagtattatatatgtccatgtgatgacaatgtgggtctcccta |
31454653 |
T |
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| Q |
519 |
ctttttagattgttttgttttattttaggcctacaattccttaacattgtgatttaattaatcctatggcggtaagatggactgtgtaaattggtggtag |
618 |
Q |
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| T |
31454652 |
ctttttagattgttttgttttattttaggcctacaattccttaacattgtgatttaattaatcctatggcggtaagatggactgtgtaaattggtggtag |
31454553 |
T |
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| Q |
619 |
tacacaaacaattgatacatgacattgcaggtatatgct |
657 |
Q |
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| T |
31454552 |
tacacaaacaattgatacatgacattgcaggtatatgct |
31454514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 9385376 - 9385461
Alignment:
| Q |
96 |
ttgttgtgtttgttgagattggaagagttcttccatgcaattgtatagctctgcaagcacaactaaatcactttgaattgtctctg |
181 |
Q |
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| T |
9385376 |
ttgttgagtttgtggagagttgaagagttcttccatacaattgtaaatctctgcaagccctactaagtcactctgaattttctctg |
9385461 |
T |
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