View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_50 (Length: 391)
Name: NF20665_low_50
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 659141 - 658845
Alignment:
| Q |
18 |
taacgaaccgatttcggagaaacaaatcaacgcgagagagagtgtaaggtttgaatggggagtttcatgtttcaatcttcaatgtgttgttgggttttcc |
117 |
Q |
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| T |
659141 |
taacgaaccgatttcagagaaacaaatcaacgcgagagagagtgtaaggtttgaatggggagtttcatgtttcaatcttcaatgtgttgttgggttttcc |
659042 |
T |
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| Q |
118 |
ttttgctttttcgcacttggttctacttctaggatgtaaaaacaaaacgaca------gggtacaattataaaattttctaccctcttttagataaaaat |
211 |
Q |
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| T |
659041 |
ttttgctttttcgcacttggttctacttctaggatgtaaaaacaaaaccacaaaacttaggtacaattataaaattttctaccctcttttagataaaaat |
658942 |
T |
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| Q |
212 |
ttcattactacactannnnnnnnnnaaatttgaaaacctccctattttttcggacccaagaacactacttttaaaacctaaataacatttgtacaac |
308 |
Q |
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| T |
658941 |
ttcattactacactatttttaaaaaaaaaattaaaacttccctattttttcggacccaagaacactacttttaaaacctaaataatatttatacaac |
658845 |
T |
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