View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_53 (Length: 381)
Name: NF20665_low_53
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 94 - 365
Target Start/End: Complemental strand, 4608087 - 4607820
Alignment:
| Q |
94 |
ttcatatgatatctaatcttaaattcaaaaagtactttcaactcacccaataacaatctaaaaaatcactgtcaaatggttccaacaacaattggaaaac |
193 |
Q |
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| T |
4608087 |
ttcatatgatatctaatcttaaattcaaaaagtactttcaactcacccaataacaatctaaaaaatcactggcaaatggttccaacaacaattggaaaac |
4607988 |
T |
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| Q |
194 |
tttctggaacaatgtgtactattacgtatgaaagatacccactaaaaaacaaagaaacccgtgagctagctagttagaaagagttttcttctagttcaaa |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4607987 |
tttctggaacaatgtgtactattacgtatgaaagatacccactaaaaaacaaagaaacccgtgag----ctagttagaaagagttttcttctagttcaaa |
4607892 |
T |
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| Q |
294 |
aaactcattgagtatagtttcatttcaaaaacccatttgagtatattttcttcacatttgagtatagtttca |
365 |
Q |
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| T |
4607891 |
aaactcattgagtatagtttcatttcaaaaacccatttgagtatattttcttcacatttgagtatagtttca |
4607820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 4608169 - 4608132
Alignment:
| Q |
12 |
aagaattagagacaaaacataataacattaatcatagg |
49 |
Q |
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| T |
4608169 |
aagaattagagacaaaacataataacattaatcatagg |
4608132 |
T |
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