View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_57 (Length: 368)
Name: NF20665_low_57
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 16370115 - 16369775
Alignment:
| Q |
18 |
atttgcagtgagggcacaaattgccctttccattaaaggtttggattatgagaacattgtagaaaacttgaattccaaaagtgatttgtttcttcagtcc |
117 |
Q |
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| T |
16370115 |
atttgcagtgagggcacaaattgccctttccatcaaaggtttggattatgagaacattgtagaaaacttgaattccaaaagtgatttgtttcttcagtcc |
16370016 |
T |
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| Q |
118 |
aatcctgtatacnnnnnnntcccagttctcattcatggagataaagccatttgtgaatcagcaataatagttgaatatattgatgaagtttggaaaaata |
217 |
Q |
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| T |
16370015 |
aatcctgtatacaaaaaaatcccagttctcattcatggagataaagccatttgtgaatcagcaataatagttgaatatattgatgaagtttggaaaaata |
16369916 |
T |
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| Q |
218 |
atggtactccctcaattcttccttcaaatgcttatgatcgagccagtgctagattttggggtgcctacatagatgacaaggtattaatttatattcctta |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16369915 |
atggcactccctcaattcttccttcaaatgcttatgatcgagccagtgctagattttggggtgcctacatagatgacaaggtattaatttatattcctta |
16369816 |
T |
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| Q |
318 |
ttcattttaannnnnnnngatatttttagggttaagtattat |
359 |
Q |
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| T |
16369815 |
ttcattttaa-ttttattgatatttttagggttaagtattat |
16369775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 57 - 316
Target Start/End: Complemental strand, 16374212 - 16373952
Alignment:
| Q |
57 |
tttggattatgagaacattgtagaaaacttgaattccaaaagtgatttgtttcttcagtccaatcctgtatacnnnnnnntcccagttctcattcatgga |
156 |
Q |
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| T |
16374212 |
tttggactatgagaacattgtagaaaccatgaattccaaaagtgatttgtttcttcagtccaatcctgtatt-aaaaaaatcccagttctcattcatgga |
16374114 |
T |
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| Q |
157 |
gataaagccatttgtgaatcagcaa-taatagttgaatatattgatgaagtttggaaaaataatggtactccctcaattcttccttcaaatgcttatgat |
255 |
Q |
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| T |
16374113 |
gataaagccatttgtgaatcagcaaataatagttgaatatattgatgaagtttggaaaaataatggtactccctcaattcttccttcaaatgcttatgac |
16374014 |
T |
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| Q |
256 |
cgagccagtgctagattttggg-gtgcctacatagatgacaaggtattaatttatattcctt |
316 |
Q |
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| T |
16374013 |
cgagccattgcgaaattttgggtttgcctacatcgatgacaaggtattaatttatattcctt |
16373952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 211 - 277
Target Start/End: Complemental strand, 20605753 - 20605687
Alignment:
| Q |
211 |
aaaaataatggtactccctcaattcttccttcaaatgcttatgatcgagccagtgctagattttggg |
277 |
Q |
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| T |
20605753 |
aaaaataatggtactccttttatccttccttcaaatgcttatgaccgagccagtgctagattttggg |
20605687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 20605849 - 20605756
Alignment:
| Q |
79 |
gaaaacttgaattccaaaagtgatttgtttcttcagt--ccaatcctgtatacnnnnnnntcccagttctcattcatggagataaagccatttg |
170 |
Q |
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| T |
20605849 |
gaaaacttgaattccaaaagtgatttattttttcagtacccagccttgtattcaaaaaaatcccagttctcattcatggagataaagccatttg |
20605756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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