View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_59 (Length: 359)
Name: NF20665_low_59
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 37865120 - 37864837
Alignment:
| Q |
1 |
gttagaatctttagtagaatcaaatttctaaaataaataaacttaccgaaccagttgaacatttttctcctcgttttctcctcgttctaaaaattaaaac |
100 |
Q |
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| T |
37865120 |
gttagaatctttagtagaatcaaatttctaaaataaataaacttaccgaaccagttgtacatttttctcctcgttttctcctcgttctaaaaattaaaac |
37865021 |
T |
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| Q |
101 |
tacttaccgaaccagttgtacaattttaacccatcaatggcatgaaccacttaatcatatacgaccttaaaactaaaaattagaactaataatatgcaat |
200 |
Q |
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| T |
37865020 |
tacttaccgaaccagttgtacaattttaacccatcaatggcatgaaccacttaatcatatacgaccttaaaactaaaaattagaactaataatatgcaat |
37864921 |
T |
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| Q |
201 |
tagatacgactctgaggtacaaatatttagtaactgaaacatcttaagtaagattaagttcgattgattgaacctatatcaaat |
284 |
Q |
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| T |
37864920 |
tagatacgactctgaggtacaaatatttagtaactgaaacatcttaaataagattaagttcgattgattgaaccgatatcaaat |
37864837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 294 - 343
Target Start/End: Complemental strand, 37863936 - 37863887
Alignment:
| Q |
294 |
gaaaattaggctcgcctccccaaaacaacacaaacaccttctctagtttt |
343 |
Q |
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| T |
37863936 |
gaaaattaggctcgcccgcccaaaacaacacaaacaccttctctagtttt |
37863887 |
T |
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