View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_60 (Length: 355)

Name: NF20665_low_60
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_60
NF20665_low_60
[»] chr3 (8 HSPs)
chr3 (19-347)||(1106939-1107278)
chr3 (19-352)||(1049812-1050160)
chr3 (19-352)||(1076728-1077077)
chr3 (19-352)||(1299943-1300292)
chr3 (19-345)||(1090541-1090883)
chr3 (21-125)||(13854743-13854847)
chr3 (224-265)||(5854815-5854856)
chr3 (221-262)||(13854598-13854639)
[»] scaffold0090 (2 HSPs)
scaffold0090 (21-125)||(8649-8753)
scaffold0090 (221-269)||(8860-8908)
[»] chr5 (1 HSPs)
chr5 (222-286)||(22689931-22689995)
[»] chr8 (4 HSPs)
chr8 (223-290)||(23360273-23360340)
chr8 (224-325)||(23554723-23554824)
chr8 (22-81)||(23555158-23555217)
chr8 (223-265)||(23561106-23561148)
[»] chr6 (1 HSPs)
chr6 (225-267)||(3979622-3979664)


Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 1107278 - 1106939
Alignment:
Q  19 agaaccttgacaagatttcggtgttgaagtttcgaacataaaataacttcatttttaaattctcttgttccttgttttgaacttcctgaaagccttttga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1107278 agaaccttgacaagatttcggtgttgaagtttcgaacataaaataacttcatttttaaattctcttgttccttgttttgaacttcctgaaagccttttga 1107179  T
Q  119 cggcaatctctcgtctgtctagaacaagtgtaccctaaattttatagttagaaaaa-------------gagattcaagggttttctcatctattataac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||| ||||||||||||||||||||||||||    
T  1107178 cggcaatctctcgtctgtctagaacaagtgtaccctaaattttatagttagaaaaaattgttagaaaaagagactcaagggttttctcatctattataac 1107079  T
Q  206 caagtgttattgcatgtttaccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggcatcaattattgtagac 305  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1107078 caagt--tattgcatgtttaccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggcatcaattattgtagac 1106981  T
Q  306 agattgaagaatggaagctcaaaatcttgttcgtcttcatct 347  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1106980 agattgaagaatggaagctcaaaatcttgttcgtcttcatct 1106939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 1050160 - 1049812
Alignment:
Q  19 agaaccttgacaagatttcggtgttgaagtttcgaacataaaataacttcatttttaaattctcttgttccttgttttgaacttcctgaaagccttttga 118  Q
    |||||||| ||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1050160 agaaccttaacaagatttcggtgttgaagttttgcacataatataacttcatttttaaattctcttgttccttgtttcgaacttcctgaaagccttttga 1050061  T
Q  119 cggcaatctctcgtctgtctagaacaagtgtaccctaaattttata-------------gttagaaaaagagattcaagggttttctcatctattataac 205  Q
    ||||||||||| | |  |||  | | |||||||||||||| |||||             ||||||||| |||| ||||| | |||||||| | || ||      
T  1050060 cggcaatctcttgcccatctgtagctagtgtaccctaaatattatagttggaaaaaattgttagaaaatgagactcaagagatttctcatgtgttgtatt 1049961  T
Q  206 caag-tgtt-attgcatgtttaccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggcatcaattattgtag 303  Q
    |||| ||||   |||||||||||||||||||| |||||||| ||||||||||| || |||||||  || || |||||||| ||||||   || ||||| |    
T  1049960 caagttgttgcatgcatgtttaccttatatactggtccaaagccaccttctccgagtttgttatagttcgaaaagtcatttgtggcacttatcattgttg 1049861  T
Q  304 acagattgaagaatggaagctcaaaatcttgttcgtcttcatctctctc 352  Q
    | | ||||||||| ||||||||||||||||||| |||||||||| ||||    
T  1049860 aaatattgaagaaaggaagctcaaaatcttgttggtcttcatctttctc 1049812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 352
Target Start/End: Complemental strand, 1077077 - 1076728
Alignment:
Q  19 agaaccttgacaagatttcggtgttgaagtttcgaacataaaataacttcatttttaaattctcttgttccttgttttgaacttcctgaaagccttttga 118  Q
    |||||||| ||||||||||| ||||||||||| | |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  1077077 agaaccttaacaagatttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttga 1076978  T
Q  119 cggcaatctctcgtctgtctagaacaagtgtaccctaaattttatag-------------ttagaaaaagagattc-aagggttttctcatctattataa 204  Q
    ||||||||||||| |  || | | | |||||||||||||| ||||||             |||| ||| |||| || ||| | |||||||| | || ||     
T  1076977 cggcaatctctcgcccatccatagctagtgtaccctaaatattatagttggaaaaaattgttaggaaatgagactctaagagatttctcatgtgttgtat 1076878  T
Q  205 ccaagt-gttat-tgcatgtttaccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggcatcaattattgta 302  Q
     ||||| |||   |||||||||||||||||||| |||||||| |||||||||||||| || ||||  |  || |||| ||| ||||||   || ||||||    
T  1076877 tcaagttgttgcatgcatgtttaccttatatactggtccaaagccaccttctccaagtttattatagtctgaaaagtgatttgtggcacttatcattgta 1076778  T
Q  303 gacagattgaagaatggaagctcaaaatcttgttcgtcttcatctctctc 352  Q
    || | ||||||||| ||||||||||||||||||| |||||||||||||||    
T  1076777 gaaatattgaagaaaggaagctcaaaatcttgttggtcttcatctctctc 1076728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 1299943 - 1300292
Alignment:
Q  19 agaaccttgacaagatttcggtgttgaagtttcgaacataaaataacttcatttttaaattctcttgttccttgttttgaacttcctgaaagccttttga 118  Q
    |||||||| ||||||||||| ||||||||||| | |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  1299943 agaaccttaacaagatttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttga 1300042  T
Q  119 cggcaatctctcgtctgtctagaacaagtgtaccctaaattttatag-------------ttagaaaaagagattc-aagggttttctcatctattataa 204  Q
    ||||||||||||| |  || | | | |||||||||||||| ||||||             |||| ||| |||| || ||| | |||||||| | || ||     
T  1300043 cggcaatctctcgcccatccatagctagtgtaccctaaatattatagttggaaaaaattgttaggaaatgagactctaagagatttctcatgtgttgtat 1300142  T
Q  205 ccaagt-gttat-tgcatgtttaccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggcatcaattattgta 302  Q
     ||||| |||   |||||||||||||||||||| |||||||| |||||||||||||| || ||||  |  || |||| ||| ||||||   || ||||||    
T  1300143 tcaagttgttgcatgcatgtttaccttatatactggtccaaagccaccttctccaagtttattatagtctgaaaagtgatttgtggcacttatcattgta 1300242  T
Q  303 gacagattgaagaatggaagctcaaaatcttgttcgtcttcatctctctc 352  Q
    || | ||||||||| ||||||||||||||||||| |||||||||||||||    
T  1300243 gaaatattgaagaaaggaagctcaaaatcttgttggtcttcatctctctc 1300292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 1090883 - 1090541
Alignment:
Q  19 agaaccttgacaagatttcggtgttgaagtttcgaacataaaataacttcatttttaaattctcttgttccttgttttgaacttcctgaaagccttttga 118  Q
    |||||||| ||||||||||| ||||||||||| | |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  1090883 agaaccttaacaagatttcgatgttgaagttttgcacataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttga 1090784  T
Q  119 cggcaatctctcgtctgtctagaacaagtgtaccctaaattttatag-------------ttagaaaaagagattc-aagggttttctcatctattataa 204  Q
    ||||||||||| | |  |||  | | |||||||||||||| ||||||             |||| ||| |||| || ||| | |||||||| | || ||     
T  1090783 cggcaatctcttgcccatctgtagctagtgtaccctaaatattatagttggaaaaaattgttaggaaatgagactctaagagatttctcatgtgttgtat 1090684  T
Q  205 ccaagt-gttat-tgcatgtttaccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggcatcaattattgta 302  Q
     ||||| |||   |||||||||||||||||||| |||||||| |||||||||||||| |||||||  || || |||||||| ||||||   || ||||||    
T  1090683 tcaagttgttgcatgcatgtttaccttatatactggtccaaagccaccttctccaagtttgttatagttcgaaaagtcatttgtggcacttatcattgta 1090584  T
Q  303 gacagattgaagaatggaagctcaaaatcttgttcgtcttcat 345  Q
    || | |||||| || ||||||||||||||||||| ||||||||    
T  1090583 gaaatattgaacaaaggaagctcaaaatcttgttggtcttcat 1090541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 13854847 - 13854743
Alignment:
Q  21 aaccttgacaagatttcggtgttgaagtttcgaacataaaataacttcatttttaaattctcttgttccttgttttgaacttcctgaaagccttttgacg 120  Q
    |||||| ||||||||||||||||||||||| | |||||| ||||||||||||| ||| ||| | | |||||||   ||||| | |||||||||||||||     
T  13854847 aacctttacaagatttcggtgttgaagtttagtacataatataacttcattttaaaactctttaggtccttgtccagaactccttgaaagccttttgaca 13854748  T
Q  121 gcaat 125  Q
    |||||    
T  13854747 gcaat 13854743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 5854856 - 5854815
Alignment:
Q  224 taccttatataccggtccaaaaccaccttctccaagcttgtt 265  Q
    |||||| |||||||||||||||||||||||||| ||||||||    
T  5854856 taccttgtataccggtccaaaaccaccttctcccagcttgtt 5854815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 13854639 - 13854598
Alignment:
Q  221 gtttaccttatataccggtccaaaaccaccttctccaagctt 262  Q
    ||||||||||||||| ||||||||||||||||| || |||||    
T  13854639 gtttaccttatatactggtccaaaaccaccttccccgagctt 13854598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 8649 - 8753
Alignment:
Q  21 aaccttgacaagatttcggtgttgaagtttcgaacataaaataacttcatttttaaattctcttgttccttgttttgaacttcctgaaagccttttgacg 120  Q
    |||||| ||||||||||||||||||||||| | |||||| ||||||||||| ||||| ||| |   |||||||   ||||| | |||||||||||||||     
T  8649 aaccttaacaagatttcggtgttgaagtttagtacataatataacttcattcttaaactctttaagtccttgtccagaactccttgaaagccttttgaca 8748  T
Q  121 gcaat 125  Q
    |||||    
T  8749 gcaat 8753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 269
Target Start/End: Original strand, 8860 - 8908
Alignment:
Q  221 gtttaccttatataccggtccaaaaccaccttctccaagcttgttatca 269  Q
    ||||||||| ||||||||||||||||||||||| || ||||||||||||    
T  8860 gtttaccttgtataccggtccaaaaccaccttcaccgagcttgttatca 8908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 22689931 - 22689995
Alignment:
Q  222 tttaccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggt 286  Q
    |||||||| ||||||||||||||||||||||| ||||| || |||||||| ||||||| ||||||    
T  22689931 tttaccttgtataccggtccaaaaccaccttcaccaagtttattatcatttgagaagttattggt 22689995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 290
Target Start/End: Complemental strand, 23360340 - 23360273
Alignment:
Q  223 ttaccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggca 290  Q
    |||||||||| || || |||||||||||||| ||||| ||||| ||||| ||||||||||| ||||||    
T  23360340 ttaccttataaacaggaccaaaaccaccttcaccaagtttgttgtcatttgagaagtcattagtggca 23360273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 23554824 - 23554723
Alignment:
Q  224 taccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggcatcaattattgtagacagattgaagaatggaagc 323  Q
    |||||| ||||||||||||||||||||||| ||||| ||||| ||  | ||||| | ||| || ||||||| |||||| || ||||  ||||| ||||||    
T  23554824 taccttgtataccggtccaaaaccaccttcaccaagtttgttgtccgttgagaacttattagttgcatcaagtattgttgaaagatcaaagaaaggaagc 23554725  T
Q  324 tc 325  Q
    ||    
T  23554724 tc 23554723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 23555217 - 23555158
Alignment:
Q  22 accttgacaagatttcggtgttgaagtttcgaacataaaataacttcatttttaaattct 81  Q
    ||||| ||||||||||||||||||||||| | |||||| || |||||| | |||||||||    
T  23555217 accttaacaagatttcggtgttgaagtttagcacataatattacttcactcttaaattct 23555158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 265
Target Start/End: Original strand, 23561106 - 23561148
Alignment:
Q  223 ttaccttatataccggtccaaaaccaccttctccaagcttgtt 265  Q
    ||||||| ||||| |||||||||||||||||||||| ||||||    
T  23561106 ttaccttgtatacaggtccaaaaccaccttctccaatcttgtt 23561148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 3979622 - 3979664
Alignment:
Q  225 accttatataccggtccaaaaccaccttctccaagcttgttat 267  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  3979622 accttgtataccggtccaaaaccaccttctccaagtttgttat 3979664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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