View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_62 (Length: 352)
Name: NF20665_low_62
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 22 - 334
Target Start/End: Complemental strand, 1375222 - 1374910
Alignment:
| Q |
22 |
catatcattctcaacaggtcctctcttttattttggatgtcaatgtaagttgagaaaatgttcccttcataatcattaaaattattatcatcctgcattt |
121 |
Q |
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| T |
1375222 |
catattattctcaacaggtcctctcttttattttggatgtcaatgtaagttgagaaaatgttcccttcataatcattaaaattattatcatcctgcattt |
1375123 |
T |
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| Q |
122 |
ttatttcacagcaaaatcattataatcagttcataatcaagtatttnnnnnnnnttattttatataaaatcaaaccaagactgtttaatctgtttgtgcc |
221 |
Q |
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| T |
1375122 |
ttatttcacagcaaaattattataatcagttcataatcaagtatttaaaaaaaattattttatataaaatcaaaccaagactgtttaatctgtttgtgcc |
1375023 |
T |
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| Q |
222 |
cctaacctttaccatgcaaactttattataggattaaaaaatggtaaaagaaatcattaagtgtccggaaaaagatgggacttgtgcagtcacaatcttg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1375022 |
cctaacctttaccatgcaaactttattataggattaaaaaatggtaaaagaaatcattaagtgtcccgaaaaagatgggacttgtgcagtcacaatcttg |
1374923 |
T |
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| Q |
322 |
tatatgatcattt |
334 |
Q |
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||||||||||||| |
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| T |
1374922 |
tatatgatcattt |
1374910 |
T |
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