View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_63 (Length: 350)

Name: NF20665_low_63
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_63
NF20665_low_63
[»] chr4 (8 HSPs)
chr4 (18-339)||(54010024-54010345)
chr4 (19-76)||(5024659-5024716)
chr4 (37-98)||(40391245-40391306)
chr4 (29-97)||(24980677-24980745)
chr4 (19-79)||(54235264-54235324)
chr4 (23-58)||(3249714-3249749)
chr4 (19-51)||(5496893-5496925)
chr4 (32-96)||(48514590-48514654)
[»] chr8 (5 HSPs)
chr8 (19-79)||(29111001-29111061)
chr8 (26-79)||(8777777-8777830)
chr8 (29-74)||(13209977-13210022)
chr8 (19-79)||(31236867-31236926)
chr8 (25-90)||(28725583-28725648)
[»] chr3 (6 HSPs)
chr3 (23-79)||(31280163-31280219)
chr3 (19-75)||(26914491-26914547)
chr3 (19-75)||(32221512-32221568)
chr3 (29-96)||(37330917-37330985)
chr3 (23-75)||(40905814-40905866)
chr3 (19-59)||(22756916-22756956)
[»] chr2 (12 HSPs)
chr2 (19-79)||(2884264-2884324)
chr2 (19-86)||(17437168-17437235)
chr2 (19-86)||(43398880-43398947)
chr2 (29-85)||(10459268-10459324)
chr2 (19-86)||(31469072-31469139)
chr2 (19-96)||(944762-944839)
chr2 (26-79)||(7932751-7932804)
chr2 (19-79)||(44726824-44726884)
chr2 (26-85)||(16180484-16180543)
chr2 (29-79)||(15660703-15660753)
chr2 (26-59)||(43042194-43042227)
chr2 (19-79)||(41374571-41374631)
[»] chr7 (6 HSPs)
chr7 (19-93)||(5026134-5026208)
chr7 (19-89)||(6803305-6803375)
chr7 (19-59)||(44816495-44816535)
chr7 (19-77)||(16866443-16866501)
chr7 (23-56)||(18732036-18732069)
chr7 (19-59)||(30794469-30794509)
[»] chr5 (10 HSPs)
chr5 (19-79)||(38958069-38958129)
chr5 (19-79)||(39030571-39030631)
chr5 (27-86)||(34252718-34252777)
chr5 (21-79)||(42708590-42708648)
chr5 (19-79)||(19644440-19644500)
chr5 (19-79)||(42324922-42324982)
chr5 (19-85)||(39030605-39030671)
chr5 (19-51)||(9530949-9530981)
chr5 (26-86)||(9956547-9956607)
chr5 (19-79)||(30293384-30293444)
[»] chr1 (6 HSPs)
chr1 (19-79)||(3739856-3739916)
chr1 (19-79)||(30693343-30693403)
chr1 (19-85)||(29855060-29855126)
chr1 (19-77)||(37918956-37919014)
chr1 (19-79)||(29855100-29855160)
chr1 (19-59)||(47543627-47543667)
[»] scaffold0097 (1 HSPs)
scaffold0097 (19-59)||(37939-37979)
[»] scaffold0126 (1 HSPs)
scaffold0126 (20-79)||(28175-28234)
[»] chr6 (4 HSPs)
chr6 (19-85)||(28004665-28004731)
chr6 (23-89)||(31323812-31323878)
chr6 (19-59)||(8437816-8437856)
chr6 (19-79)||(9829899-9829959)
[»] scaffold0009 (1 HSPs)
scaffold0009 (19-56)||(51263-51300)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 54010024 - 54010345
Alignment:
Q  18 ctatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtgggacagaaagagtaatatagtaaagaaacttgaat 117  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54010024 ctatttggtataaattttgaatcaaatacattaagttttgtttataaatttttgcttatattgtgggacagaaagagtaatatagtaaagaaacttgaat 54010123  T
Q  118 aataaatacaaccacacatgatggccaatcccaacagaacatgcaatagtataccaaaacatataattaagacacaactttagaaagttgcttgtttatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54010124 aataaatacaaccacacatgatggccaatcccaacagaacatgcaatagtataccaaaacatataattaagacacaactttagaaagttgcttgtttatg 54010223  T
Q  218 acaaatatttttaatctgtttttgtgtgtggacttgatgaaactggccttaagccatgtttgagtgctgcttcccacacaagatcaatcctgttaacatc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54010224 acaaatatttttaatctgtttttgtgtgtggacttgatgaaactggccttaagccatgtttgagtgctgcttcccacacaagatcaatcctgttaacatc 54010323  T
Q  318 taaggcaccaacttcatgatga 339  Q
    ||||||||||||||||||||||    
T  54010324 taaggcaccaacttcatgatga 54010345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 5024716 - 5024659
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttat 76  Q
    |||||| |||||||||||||  ||||||||||| |||| ||||| |||||||||||||    
T  5024716 tatttgatataaattttgaaataaatacattaacttttatttatcaatttttgcttat 5024659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 40391306 - 40391245
Alignment:
Q  37 aaccaaatacattaaattttgtttataaatttttgcttatattgtgggacagaaagagtaat 98  Q
    ||||||||||||||| ||||||| ||  |||||| |||||||| |||||||||| |||||||    
T  40391306 aaccaaatacattaatttttgttgatcgatttttacttatattttgggacagaaggagtaat 40391245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 24980677 - 24980745
Alignment:
Q  29 aaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtgggacagaaagagtaa 97  Q
    |||||||| || ||||||||||| ||||||| | ||||||||||||| ||| || |||||| |||||||    
T  24980677 aaattttgtacaaaatacattaatttttgttgacaaatttttgcttacattttgagacagagagagtaa 24980745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 54235264 - 54235324
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    ||||| ||| ||||||||||||||||||||||| ||||||| |  |||||||| |||||||    
T  54235264 tatttagtacaaattttgaaccaaatacattaacttttgttgagcaatttttgtttatatt 54235324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 3249749 - 3249714
Alignment:
Q  23 tggtataaattttgaaccaaatacattaaattttgt 58  Q
    ||||||||||||||||||||||||||||| ||||||    
T  3249749 tggtataaattttgaaccaaatacattaacttttgt 3249714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 5496893 - 5496925
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaa 51  Q
    ||||||||| |||||||||||||||||||||||    
T  5496893 tatttggtacaaattttgaaccaaatacattaa 5496925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 48514590 - 48514654
Alignment:
Q  32 ttttgaaccaaatacattaaattttgtttataaatttttgcttatattgtgggacagaaagagta 96  Q
    ||||| |||||||||||||| ||||||| |  |||||||| |||||||||| ||| ||| |||||    
T  48514590 ttttggaccaaatacattaacttttgttgactaatttttgtttatattgtgagacggaatgagta 48514654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 29111001 - 29111061
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    ||||||||||||||||||||||||||||||||| ||| ||| || |||||||| |||||||    
T  29111001 tatttggtataaattttgaaccaaatacattaagtttcgttgatcaatttttgtttatatt 29111061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 8777830 - 8777777
Alignment:
Q  26 tataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    |||||||||||||||||||| ||||| ||||||| || |||||||| |||||||    
T  8777830 tataaattttgaaccaaatatattaacttttgttgatcaatttttgtttatatt 8777777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 13210022 - 13209977
Alignment:
Q  29 aaattttgaaccaaatacattaaattttgtttataaatttttgctt 74  Q
    ||||||||||||||||||||||| ||||||| || |||||||||||    
T  13210022 aaattttgaaccaaatacattaacttttgttgatcaatttttgctt 13209977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 31236926 - 31236867
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    |||||||| ||||||||| ||||||||||||||| ||| |||| | |||||||||||||||    
T  31236926 tatttggtgtaaattttggaccaaatacattaaacttt-tttagatatttttgcttatatt 31236867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 28725648 - 28725583
Alignment:
Q  25 gtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtgggacagaa 90  Q
    ||||||||| |||| |||||||| |||||||| || |  |||||||||||| ||| ||||||||||    
T  28725648 gtataaattctgaatcaaatacaataaattttattgaccaatttttgcttacattttgggacagaa 28725583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 31280219 - 31280163
Alignment:
Q  23 tggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    ||||| ||||||||||||||||||||||||||||||| || ||||||| ||||||||    
T  31280219 tggtacaaattttgaaccaaatacattaaattttgttgatcaatttttacttatatt 31280163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 26914491 - 26914547
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgctta 75  Q
    ||||| ||||||||||||||||| ||||||||| ||||||| || ||||||||||||    
T  26914491 tatttagtataaattttgaaccacatacattaatttttgttgatcaatttttgctta 26914547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 32221512 - 32221568
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgctta 75  Q
    ||||||||| ||||||||||||||||||||||| ||||||| |  ||||||||||||    
T  32221512 tatttggtacaaattttgaaccaaatacattaacttttgttgactaatttttgctta 32221568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 37330985 - 37330917
Alignment:
Q  29 aaattttgaaccaaatacattaaattt-tgtttataaatttttgcttatattgtgggacagaaagagta 96  Q
    ||||||||||||| ||||||||||||| | || ||||||||||| ||||||| ||||||||| ||||||    
T  37330985 aaattttgaaccatatacattaaatttatattaataaatttttgtttatattttgggacagagagagta 37330917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 40905866 - 40905814
Alignment:
Q  23 tggtataaattttgaaccaaatacattaaattttgtttataaatttttgctta 75  Q
    ||||||||||||||||||||||| ||||| ||||||| |  ||||||||||||    
T  40905866 tggtataaattttgaaccaaataaattaacttttgttgaccaatttttgctta 40905814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 22756916 - 22756956
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtt 59  Q
    |||||||||||||||||||| ||||||| |||| |||||||    
T  22756916 tatttggtataaattttgaatcaaatacgttaacttttgtt 22756956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 2884324 - 2884264
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    |||||| |||||||||||||||||||||||||| ||||||| | |||||||| ||||||||    
T  2884324 tatttgatataaattttgaaccaaatacattaatttttgttgacaaatttttacttatatt 2884264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 17437168 - 17437235
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtgggac 86  Q
    ||||||||| ||||||||||| ||||||||||| ||||||| | ||||||||| ||||||| ||||||    
T  17437168 tatttggtacaaattttgaactaaatacattaatttttgttgacaaatttttgtttatattttgggac 17437235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 43398880 - 43398947
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtgggac 86  Q
    ||||||||| ||||||||||||||||||||||| ||||||| | ||||||||| ||| ||| ||||||    
T  43398880 tatttggtacaaattttgaaccaaatacattaacttttgttaacaaatttttgtttagattttgggac 43398947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 10459324 - 10459268
Alignment:
Q  29 aaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtggga 85  Q
    ||||||||||||||||||||||| ||||||| |  |||||||||||||||| |||||    
T  10459324 aaattttgaaccaaatacattaacttttgttgaccaatttttgcttatattttggga 10459268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 31469139 - 31469072
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtgggac 86  Q
    |||||| || ||||||| ||||||||||||||| ||||||| |  |||||||||||||||| ||||||    
T  31469139 tatttgatacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatattttgggac 31469072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 944839 - 944762
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtgggacagaaagagta 96  Q
    ||||||||| ||||||||||| ||||||||||| |||| || ||  ||||||||||||||| ||  || |||||||||    
T  944839 tatttggtacaaattttgaactaaatacattaacttttattgatcgatttttgcttatattttgaaacggaaagagta 944762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 7932804 - 7932751
Alignment:
Q  26 tataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    ||||||||||||||||||||| |||| ||||||| |  ||||||||||||||||    
T  7932804 tataaattttgaaccaaatacgttaacttttgttgactaatttttgcttatatt 7932751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 44726824 - 44726884
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    |||||| |||||||||| ||| ||||||||||| ||||||| || ||||||| ||||||||    
T  44726824 tatttgatataaattttaaactaaatacattaatttttgttgatcaattttttcttatatt 44726884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 16180484 - 16180543
Alignment:
Q  26 tataaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtggga 85  Q
    |||||||||||||||||||||||||| ||||||| |  || |||| |||||||| |||||    
T  16180484 tataaattttgaaccaaatacattaacttttgttgaccaaattttacttatattttggga 16180543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 15660703 - 15660753
Alignment:
Q  29 aaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    |||||||||| |||||||||||| || |||| || ||||||||||||||||    
T  15660703 aaattttgaatcaaatacattaatttgtgttgatcaatttttgcttatatt 15660753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 43042227 - 43042194
Alignment:
Q  26 tataaattttgaaccaaatacattaaattttgtt 59  Q
    ||||||||||||||| ||||||||||||||||||    
T  43042227 tataaattttgaaccgaatacattaaattttgtt 43042194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 41374571 - 41374631
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    ||||||||||||| |||||| |||||||||||| ||| ||| |  ||||||| ||||||||    
T  41374571 tatttggtataaactttgaatcaaatacattaactttcgttgactaatttttacttatatt 41374631  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 5026208 - 5026134
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtgggacagaaaga 93  Q
    ||||||||| |||||||| || ||||| ||||| ||||||| |  |||||||||||||||| |||||||||||||    
T  5026208 tatttggtacaaattttggactaaatatattaacttttgttaaccaatttttgcttatattttgggacagaaaga 5026134  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 6803375 - 6803305
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtgggacaga 89  Q
    ||||||||| ||||||| ||| ||||||||||| ||||||| |  || ||||||||||||| |||||||||    
T  6803375 tatttggtacaaattttaaactaaatacattaacttttgttgaccaaattttgcttatattttgggacaga 6803305  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 44816535 - 44816495
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtt 59  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  44816535 tatttggtacaaattttgaaccaaatacattaacttttgtt 44816495  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 16866443 - 16866501
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttata 77  Q
    |||| |||| ||||||| ||||||||||||||| ||||||| |  ||||||||||||||    
T  16866443 tattaggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttata 16866501  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 18732036 - 18732069
Alignment:
Q  23 tggtataaattttgaaccaaatacattaaatttt 56  Q
    ||||||||||||||||||||||||||||| ||||    
T  18732036 tggtataaattttgaaccaaatacattaactttt 18732069  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 30794509 - 30794469
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtt 59  Q
    ||||||||| |||||||||| |||||| |||||||||||||    
T  30794509 tatttggtacaaattttgaatcaaatatattaaattttgtt 30794469  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 38958129 - 38958069
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    ||||||||| ||| ||||||||||||||||||| ||||||| || ||||||| ||||||||    
T  38958129 tatttggtacaaaatttgaaccaaatacattaacttttgttaatcaatttttacttatatt 38958069  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 39030631 - 39030571
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    ||||||||| ||||||| ||||||||||||||| ||||||| |  ||||||||||||||||    
T  39030631 tatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatatt 39030571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 34252777 - 34252718
Alignment:
Q  27 ataaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtgggac 86  Q
    ||||||||||||||||||||||||| ||||||| |  |||||||||||| ||| ||||||    
T  34252777 ataaattttgaaccaaatacattaacttttgttgaccaatttttgcttacattttgggac 34252718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 42708648 - 42708590
Alignment:
Q  21 tttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    ||||||||||||||| ||| ||||||||||| ||||||| || ||||||||| ||||||    
T  42708648 tttggtataaattttcaactaaatacattaacttttgttgattaatttttgcgtatatt 42708590  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 19644440 - 19644500
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    ||||| |||||||||||||||||||||| |||| ||||||| || |||| || ||||||||    
T  19644440 tatttagtataaattttgaaccaaatacgttaatttttgttgatcaattcttacttatatt 19644500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 42324922 - 42324982
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    ||||||||||||||||| || |||||||||||| ||||||| |  ||||||| ||||||||    
T  42324922 tatttggtataaattttaaaacaaatacattaacttttgttgaccaatttttacttatatt 42324982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 39030605 - 39030671
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtggga 85  Q
    ||||||||  ||| |||| |||||||||||||| ||||||| |  |||||||||||||||| |||||    
T  39030605 tatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgcttatattttggga 39030671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 9530981 - 9530949
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaa 51  Q
    |||||| ||||||||||||||||||||||||||    
T  9530981 tatttgatataaattttgaaccaaatacattaa 9530949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 9956547 - 9956607
Alignment:
Q  26 tataaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtgggac 86  Q
    ||||||||||||| |||||||||||| ||||||| |  ||||||| |||| ||| ||||||    
T  9956547 tataaattttgaatcaaatacattaacttttgttaaccaatttttacttacattttgggac 9956607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 30293444 - 30293384
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    |||||| ||||||||||||| |||||||||| | ||||||| || || |||| ||||||||    
T  30293444 tatttgatataaattttgaatcaaatacattgacttttgttgatcaaattttacttatatt 30293384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 3739856 - 3739916
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    ||||||||| ||||||| ||||||||||||||| ||||||| |  ||||||||||||||||    
T  3739856 tatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatatt 3739916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 30693403 - 30693343
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    ||||||||| |||||||||| |||||||||||| ||||||| || |||||||  |||||||    
T  30693403 tatttggtacaaattttgaatcaaatacattaatttttgttgatcaatttttatttatatt 30693343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 29855126 - 29855060
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtggga 85  Q
    ||||| ||| ||||||| |||||||||||| || ||||||| || |||||| ||||||||| |||||    
T  29855126 tatttcgtacaaatttttaaccaaatacatcaacttttgttgattaattttcgcttatattttggga 29855060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 37918956 - 37919014
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttata 77  Q
    |||||| |||||||||| ||||||||||||| | ||||||| | ||||||| |||||||    
T  37918956 tatttgatataaattttaaaccaaatacattcacttttgttgacaaattttcgcttata 37919014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 29855100 - 29855160
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    ||||||||  ||| |||| || ||||||||||| ||||||| || ||||||||||||||||    
T  29855100 tatttggttaaaaatttgtacgaaatacattaacttttgttgatcaatttttgcttatatt 29855160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 47543667 - 47543627
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtt 59  Q
    ||||||||| |||||||||||||||| |||||| |||||||    
T  47543667 tatttggtacaaattttgaaccaaattcattaatttttgtt 47543627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 37979 - 37939
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtt 59  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  37979 tatttggtataaattttaaaccaaatacattaacttttgtt 37939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 28234 - 28175
Alignment:
Q  20 atttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    ||||||||  |||||||||||||||||||||| ||||||| || |||||||  |||||||    
T  28234 atttggtacgaattttgaaccaaatacattaacttttgttaatcaatttttatttatatt 28175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 28004665 - 28004731
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtggga 85  Q
    ||||||||| ||||||||| ||||||||||||| ||||||| |  ||||||  |||||||| |||||    
T  28004665 tatttggtacaaattttgagccaaatacattaacttttgttgactaattttcccttatattttggga 28004731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 31323878 - 31323812
Alignment:
Q  23 tggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatattgtgggacaga 89  Q
    ||||| ||||||||||| ||||||||||| ||||||| |  |||||||||||| ||| |||| ||||    
T  31323878 tggtacaaattttgaacaaaatacattaacttttgttgaccaatttttgcttacattttgggtcaga 31323812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 8437816 - 8437856
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtt 59  Q
    ||||||||| |||||||||| |||||||||||| |||||||    
T  8437816 tatttggtacaaattttgaatcaaatacattaatttttgtt 8437856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 9829959 - 9829899
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaattttgtttataaatttttgcttatatt 79  Q
    ||||||||| ||||||| ||| ||||||||||| ||||||| |  ||||||| ||||||||    
T  9829959 tatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatatt 9829899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 51263 - 51300
Alignment:
Q  19 tatttggtataaattttgaaccaaatacattaaatttt 56  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  51263 tatttggtataaattttgaactaaatacattaattttt 51300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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