View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_65 (Length: 348)
Name: NF20665_low_65
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 10207214 - 10207537
Alignment:
| Q |
5 |
catcatcaccactgtcatcaatgacagtagcaatatctgatctttgaacttatattcttatcctccatcgtattataatattcctccacatttattaagt |
104 |
Q |
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| T |
10207214 |
catcatcaccactgtcatcaatgacagtagcaatatctgatctttgaacttatattcttatcctccatcgtattataatattcctccacatttattaagt |
10207313 |
T |
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| Q |
105 |
ccatctttttgcactttgatgattcttccttgtagacttttgaacttgaatacatgcttttcaatatgtttgaaaaaagaagtctttctcctttcaaagt |
204 |
Q |
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| T |
10207314 |
ccatctttttgcactttgatgattcttccttgttgacttt-gaacttgaatacatgcttttcaatatgtttgaaaaaacaagtctttctcctttcaaagt |
10207412 |
T |
|
| Q |
205 |
ttctcaatgcgattgagggtagacatgagtttttgagttttgtggtggttgttcttgctgctaggttgctgctgatgcatggttgactatggtttcccgt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10207413 |
ttctcaatgcgattgagggtagacatgagtttttgagtttcgtggtggttgttcttgctgctaggttgctgctgatgcatggttgactatgg----gagt |
10207508 |
T |
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| Q |
305 |
tctcgctaaataatctggttcaaactttt |
333 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10207509 |
tctcgctaaataatctggttcaaactttt |
10207537 |
T |
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