View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_66 (Length: 348)
Name: NF20665_low_66
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_66 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 348
Target Start/End: Original strand, 10305948 - 10306283
Alignment:
| Q |
14 |
actcaaatcacaaagtggcaccagtctattagaacttctgtttcatcaatcctcagcaatagctgctgccatctaaaaatcatcaccaaaaccaaattat |
113 |
Q |
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| T |
10305948 |
actcaaatcacaaagtggcaccagtctattagaacttctgtttcatcaatcctcaccaatagctgctgccatctaaaaatcatcaccaaaaccaaattat |
10306047 |
T |
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| Q |
114 |
tataaaacaatgcaaggtttggtccttttaagaggctagagatgttactccaatggaataaatttccaaccactatacacctgagaggtttcatgaaaca |
213 |
Q |
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| T |
10306048 |
tataaaacaatgcgaggtttggtccttttaagaggctagagatgttactccaatggaataaatttccaaccactatacacctgagagatttcatgaaaca |
10306147 |
T |
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| Q |
214 |
tagaagacgaaggacaataaccgattactgtgaaatactaacattaccactactgcatttacatttttgtactatatgaatatt-aattatattgaagat |
312 |
Q |
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| T |
10306148 |
tagaagacgaaggacaataaccgattactgtaaaatactaacattagtactactgtatttacatttttgtactatatgaatattaaattatattgaagat |
10306247 |
T |
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| Q |
313 |
tgatactccgtttacaaaatgaaatcagaagataca |
348 |
Q |
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| T |
10306248 |
taatactccgtttacaaaatgaaatcagaagataca |
10306283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 1067165 - 1067198
Alignment:
| Q |
164 |
caatggaataaatttccaaccactatacacctga |
197 |
Q |
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| T |
1067165 |
caatggaataaatttccaaccactatacatctga |
1067198 |
T |
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