View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_67 (Length: 347)
Name: NF20665_low_67
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_67 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 12702999 - 12703322
Alignment:
| Q |
13 |
tgaagtaaggatttgtacaatgattccacgcatcgactttcatcatcaactgttttatttgctgctaaagcatcaacaggaaccaaattctgcaatggtt |
112 |
Q |
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| T |
12702999 |
tgaagtaaggatttgtacagtgattccacgcatcgactttcatcatcaactgttttatttgcttctagagcatcaactggaaccaaattctgcaatggtt |
12703098 |
T |
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| Q |
113 |
tgcaaactttggaagcagaatttctatgaagctg---attgggggtctcaactttcgtgagcggacgatcaattcttctagtttcttgagtgagtgaatc |
209 |
Q |
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| T |
12703099 |
tgcaaactttggaagcagaatttctatgaagctgctgattgggggtctcaactttcgtgagcggacgatcaattcttctagtttcttgagtgagtgaatc |
12703198 |
T |
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| Q |
210 |
tccaattccaacacttgttgaacaagacccaaattgaaatccttgtttggatttctcaggttcgctatgtttcatcaatggaagacgagtttgaatagca |
309 |
Q |
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| T |
12703199 |
tccaattccaacacttgttgaacaagacccaaattgaaatccttgtttggatttctcaggttcgctatgtttcgtcaatggaagacgagttttaatagca |
12703298 |
T |
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| Q |
310 |
gcttctgtttcacaaagtagtaca |
333 |
Q |
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| T |
12703299 |
tcttctgtttcacaaagtagtaca |
12703322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 8206787 - 8206942
Alignment:
| Q |
13 |
tgaagtaaggatttgtacaatgattccacgcatcgactttcatcatcaactgttttatttgctgct---aaagcatcaacaggaaccaaattctgcaatg |
109 |
Q |
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| T |
8206787 |
tgaagtaaggatttatacaatgaatccatccttcgactttcatcatcaacagtctcatttgctgctgctacagcatcaacaggaaccacattcggcaatg |
8206886 |
T |
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| Q |
110 |
gtttgcaaactttggaagcagaatttctatgaagctgattgggggtctcaactttc |
165 |
Q |
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| T |
8206887 |
gtttacaaactttgggagcagatttcccatggtgctgacttggggtctcagctttc |
8206942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 323
Target Start/End: Original strand, 8207045 - 8207199
Alignment:
| Q |
169 |
agcggacgatcaattcttctagtttcttgagtgagtgaatctccaattccaacacttgttgaacaagacccaaattgaaatccttgtttggatttctcag |
268 |
Q |
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||||||||||||||||| ||||| ||| ||| || |||||| | | || ||||||| ||||||||||||| |||||| || |||||||||||| ||||| |
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| T |
8207045 |
agcggacgatcaattctgctagtatctcgaggaagcgaatctgctactctaacacttcttgaacaagaccccaattgacatacttgtttggattcctcag |
8207144 |
T |
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| Q |
269 |
gttcgctatgtttcatcaatggaagacgagtttgaatagcagcttctgtttcaca |
323 |
Q |
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| T |
8207145 |
gttcacgatgtttcctcaatggaagccgaattcgaatggcaggacctgtttcaca |
8207199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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