View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_7 (Length: 627)

Name: NF20665_low_7
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_7
NF20665_low_7
[»] chr3 (2 HSPs)
chr3 (123-611)||(2087789-2088277)
chr3 (9-89)||(2087681-2087761)


Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 123 - 611
Target Start/End: Original strand, 2087789 - 2088277
Alignment:
Q  123 aaacgcttaaaactatgtcgatgatgacctgataatttcaacatatctctcaaccctttaccactcccactaccgccaccgccaccgccattaactccgg 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  2087789 aaacgcttaaaactatgtcgatgatgacctgataatttcaacatatctctcaaccctttaccactcccactaccaccaccgccaccgccattaactccag 2087888  T
Q  223 cgatgtgttccgatccatgagcttcaatgtctcgttcagcatcttctgatgcacctagaagacgaagttgatcgttttccggcattggaaaactttattt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2087889 cgatgtgttccgatccatgagcttcaatgtctcgttcagcatcttctgatgcacctagaagacgaagttgatcgttttccggcattggaaaactttattt 2087988  T
Q  323 tcgagattactcaaaaacccatcaatgaaatcgcttcaatttcaaaacccagttgttaaactcatcaaatttcgaaactttgttataaaaaatcgaaatt 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2087989 tcgagattactcaaaaacccatcaatgaaatcgcttcaatttcaaaacccagttgttaaattcatcaaatttcgaaactttgttataaaaaatcgaaatt 2088088  T
Q  423 gatgaatgaatgtgaagattgnnnnnnnggaggggattgaaattctaatggatctttgtgtaaatgatgaaaatttagtgtttgttgcaatcacttgcta 522  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2088089 gatgaatgaatgtgaagattgaaaaaaaggaggggattgaaattctaatggatctttgtgtaaatgatgaaaatttagtgtttgttgcaatcacttgcta 2088188  T
Q  523 agttctgagtttgaatcgaagtagcaattcgttgaagcttgttgttaacaacaatgaagaattctcacaaatgcagtaccagaaaaaac 611  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2088189 agttctgagtttgaatcgaagtagcaattcgttgaagcttgttgttaacaacaatgaagaattctcacaaatgcagtaccagaaaaaac 2088277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 2087681 - 2087761
Alignment:
Q  9 acatcatcagaagaatcaaacgaatgaagatcaaactcagagtgagaagaatcacgcacattattactatcaacaacacga 89  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2087681 acatcaccagaagaatcaaacgaatgaagatcaaactcagagtgagaagaatcacgcacattattactatcaacaacacga 2087761  T

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