View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_70 (Length: 345)
Name: NF20665_low_70
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 325
Target Start/End: Original strand, 41429812 - 41430128
Alignment:
| Q |
10 |
taatactaggtggaaatccgtgcgtgcaaggatttgattataatgtgttaagacccttcnnnnnnnn-gtgttaagaacattttagttaataaaataata |
108 |
Q |
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| T |
41429812 |
taatattaggtggaaatccgtgcgtgcaaggatttgattataatgtgttaagacccttaaaaaaaaaagtgttaagaacattttagttaataaaataata |
41429911 |
T |
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| Q |
109 |
tattgatcgatggatttaaatggtaaaattacaaacaaattcaaacataaattgacaacatataacatttataatgcactatgtggttaatgcagttcac |
208 |
Q |
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| T |
41429912 |
tattgatcgatggatttaaatggtaaaattacaaacaaattcaaacataaattgacaacatataacatttataatccactatgtggttaatgcagttcac |
41430011 |
T |
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| Q |
209 |
ttgaagattaataaatttaaaaatgtattgcaactcgttatatgcctatttaaacactcgaatacttagaaattgcaaagatgaattattaatttaatat |
308 |
Q |
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| T |
41430012 |
ttgaagattaataaatttaaaaatgtattgcaactcgttatatgcctatttaaacactcgaatacttagaaattgcaaagatgaattattaatttaatat |
41430111 |
T |
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| Q |
309 |
aattagagagacggtag |
325 |
Q |
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| T |
41430112 |
aattagagagactgtag |
41430128 |
T |
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