View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20665_low_71 (Length: 345)
Name: NF20665_low_71
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20665_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 326
Target Start/End: Complemental strand, 45108359 - 45108045
Alignment:
| Q |
17 |
cataggccgtaactacaggggaccttatctgtataattcattttcggataaatcaacaatgccaacgttcaagaaaagaaagaaaaatcagaattgtgat |
116 |
Q |
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| T |
45108359 |
cataggccgtaacaacaggggaccttatctgtataattcgttttcagataaatcaacaatgccaacgttcaagaaaagaaagaaaaatcagaattgtgat |
45108260 |
T |
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| Q |
117 |
cctaagcaataatggaatataagatatgtggaggtagtgaaaagagtaaagagtgaagacttctgttggttactatggagtcaaaatagcaaaccccact |
216 |
Q |
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| T |
45108259 |
cctaagcaataatggaatataagatatgtggaggtagtgaaaagagtgaagagtgaagacttctgttggttactatggagtcaaaatagcaaaccccact |
45108160 |
T |
|
| Q |
217 |
tgctttcacaaaagaaaagaaaacgaaatgtgtgagagttgtcttctaaaaccaaaagcactagctatatata-----accaaaagatttgctacaccct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
45108159 |
tgctttcacaaaagaaaagaaaacgaaatgtgtgagagttgtcttctaaaaccacaagcactagctatatataataccaccaaaagatttgctacaccct |
45108060 |
T |
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| Q |
312 |
atccaatgtggtgca |
326 |
Q |
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||||||||||||||| |
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| T |
45108059 |
atccaatgtggtgca |
45108045 |
T |
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