View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20665_low_79 (Length: 321)

Name: NF20665_low_79
Description: NF20665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20665_low_79
NF20665_low_79
[»] chr4 (4 HSPs)
chr4 (1-180)||(54641250-54641429)
chr4 (1-150)||(54641620-54641769)
chr4 (1-179)||(54938074-54938251)
chr4 (259-303)||(54641109-54641153)
[»] chr7 (2 HSPs)
chr7 (2-179)||(13078259-13078436)
chr7 (103-179)||(6082221-6082297)
[»] chr3 (3 HSPs)
chr3 (2-179)||(39984048-39984225)
chr3 (112-179)||(35389071-35389138)
chr3 (115-179)||(2386599-2386663)
[»] chr2 (3 HSPs)
chr2 (2-179)||(14685285-14685462)
chr2 (2-179)||(40422109-40422286)
chr2 (2-179)||(21307141-21307314)
[»] chr1 (3 HSPs)
chr1 (103-179)||(10583719-10583795)
chr1 (103-179)||(49123075-49123151)
chr1 (124-179)||(23541321-23541376)
[»] scaffold0227 (1 HSPs)
scaffold0227 (103-178)||(12038-12113)
[»] chr6 (1 HSPs)
chr6 (103-179)||(18132106-18132182)
[»] chr5 (2 HSPs)
chr5 (112-179)||(29526368-29526435)
chr5 (103-173)||(39701944-39702014)
[»] scaffold0026 (1 HSPs)
scaffold0026 (115-179)||(80522-80586)


Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 54641429 - 54641250
Alignment:
Q  1 atgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatca 100  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54641429 atgggcaccacgacatcaatcatcctgtatttttttatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatca 54641330  T
Q  101 ccctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattctttt 180  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  54641329 ccctgtcattatacttcaagttatgggaccctggtggacacttctgttatccctcaccttgaggacaaggtgattctttt 54641250  T

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Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 54641769 - 54641620
Alignment:
Q  1 atgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatca 100  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  54641769 atgggcaccacgacatcaatcatcctgtatttttttatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacatatcg 54641670  T
Q  101 ccctgtcattatacttcaagttatgggaccctggtgcacacttctgttat 150  Q
    | || ||||||||||||||||||||||||||||||| |||||| ||||||    
T  54641669 ctctatcattatacttcaagttatgggaccctggtggacacttttgttat 54641620  T

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Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 54938251 - 54938074
Alignment:
Q  1 atgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatca 100  Q
    ||||||||||| ||||||||||||| |||        |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  54938251 atgggcaccacaacatcaatcatccagtatttttttctcaaaaatatcactacaaacagagtatatgatcagggcataagtttgcatgattcacacatcg 54938152  T
Q  101 ccctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 179  Q
    | ||||||||||||||| ||||||||||||| |||| |||||| || ||||| |||||||||||| ||||||| |||||    
T  54938151 ctctgtcattatacttc-agttatgggacccaggtggacacttatgatatccttcaccttgaggataaggtgaatcttt 54938074  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 54641153 - 54641109
Alignment:
Q  259 ggaacaggggaaatacttggggactggttactggataaataaggg 303  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  54641153 ggaacaggggaaatacttggggactggttgctggataaataaggg 54641109  T

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Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 13078259 - 13078436
Alignment:
Q  2 tgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcac 101  Q
    ||||||||||||||||||||||||||||        | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||   |    
T  13078259 tgggcaccacgacatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacacagtgc 13078358  T
Q  102 cctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 179  Q
     ||||||||||||||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||||| |||||    
T  13078359 tctgtcattatacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttt 13078436  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 6082221 - 6082297
Alignment:
Q  103 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 179  Q
    |||||| | ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||    
T  6082221 ctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttt 6082297  T

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Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 39984225 - 39984048
Alignment:
Q  2 tgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcac 101  Q
    ||||||||||||||||||||||||||||        | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||   |    
T  39984225 tgggcaccacgacatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacacagtgc 39984126  T
Q  102 cctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 179  Q
     ||||||||||||||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||||| |||||    
T  39984125 tctgtcattatacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttt 39984048  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 35389071 - 35389138
Alignment:
Q  112 tacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 179  Q
    ||||||||||||||||| ||||||| |||||| |||||||| ||| |||||||||||||||| |||||    
T  35389071 tacttcaagttatgggatcctggtggacacttatgttatccttcaacttgaggacaaggtgaatcttt 35389138  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 2386663 - 2386599
Alignment:
Q  115 ttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 179  Q
    ||||| ||||||||| |||||| |||||| || ||||| |||||||||||||||||||| |||||    
T  2386663 ttcaacttatgggactctggtggacacttatgctatccttcaccttgaggacaaggtgaatcttt 2386599  T

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Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 14685285 - 14685462
Alignment:
Q  2 tgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcac 101  Q
    ||||||||||||||||||||||||||||        | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||   |    
T  14685285 tgggcaccacgacatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacacagtgc 14685384  T
Q  102 cctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 179  Q
     ||||||||||||||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||||| |||||    
T  14685385 tctgtcattatacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttt 14685462  T

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Target: chr2; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 40422109 - 40422286
Alignment:
Q  2 tgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcac 101  Q
    ||||||||||||||||||||||||||||        | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||   |    
T  40422109 tgggcaccacgacatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacacagtgc 40422208  T
Q  102 cctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 179  Q
     ||||||||||||||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||||| |||||    
T  40422209 tctgtcattatacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttt 40422286  T

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Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 21307141 - 21307314
Alignment:
Q  2 tgggcaccacgacatcaatcatcctgtannnnnnnatcaaaaatatcactacaaacagagtatatgatcaaggcataagtttgcatgattcacacatcac 101  Q
    ||||||||||||||||||||||||||||        | ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||   |    
T  21307141 tgggcaccacgacatcaatcatcctgtattttttgctaaaaaatatcaccacaaacagggtatatgatcaaggcataagtttgcatgattcacacagtgc 21307240  T
Q  102 cctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 179  Q
     ||||||||||||||||||||||||||||| |||| |||||| |    ||| |||||||||||||||||||| |||||    
T  21307241 tctgtcattatacttcaagttatgggacccaggtggacacttat----tccttcaccttgaggacaaggtgaatcttt 21307314  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 10583719 - 10583795
Alignment:
Q  103 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 179  Q
    |||||| | ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||    
T  10583719 ctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttt 10583795  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 179
Target Start/End: Original strand, 49123075 - 49123151
Alignment:
Q  103 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 179  Q
    |||||| | ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||    
T  49123075 ctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttt 49123151  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 23541376 - 23541321
Alignment:
Q  124 tgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 179  Q
    ||||||||||||| |||||| |||||||| | ||||||||||||| |||| |||||    
T  23541376 tgggaccctggtggacacttatgttatcctttaccttgaggacaacgtgaatcttt 23541321  T

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Target: scaffold0227 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 12038 - 12113
Alignment:
Q  103 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattctt 178  Q
    |||||| | ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||    
T  12038 ctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctt 12113  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 18132182 - 18132106
Alignment:
Q  103 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 179  Q
    |||||| | ||||||||||||||||||||||||| |||||| | |||||| |||||||||||||||||||| |||||    
T  18132182 ctgtcactctacttcaagttatgggaccctggtggacacttattttatccttcaccttgaggacaaggtgaatcttt 18132106  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 29526435 - 29526368
Alignment:
Q  112 tacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 179  Q
    ||||||||||||||||||||||||| |||||| ||| |||| |||||||||||||||||||| |||||    
T  29526435 tacttcaagttatgggaccctggtggacacttatgtcatccttcaccttgaggacaaggtgaatcttt 29526368  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 103 - 173
Target Start/End: Complemental strand, 39702014 - 39701944
Alignment:
Q  103 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtga 173  Q
    |||||||| ||||||||||| ||||||||||||| |||||| | |||||| ||||||||||||||||||||    
T  39702014 ctgtcattgtacttcaagttttgggaccctggtggacacttatattatccttcaccttgaggacaaggtga 39701944  T

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Target: scaffold0026 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 80522 - 80586
Alignment:
Q  115 ttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 179  Q
    |||||||||||||||| ||||| |||||| | || ||| |||||||||||||||||||| |||||    
T  80522 ttcaagttatgggaccatggtggacacttatcttgtccttcaccttgaggacaaggtgaatcttt 80586  T

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